View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11040_high_1 (Length: 914)

Name: NF11040_high_1
Description: NF11040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11040_high_1
NF11040_high_1
[»] chr3 (7 HSPs)
chr3 (1-903)||(14337762-14338671)
chr3 (689-761)||(20503479-20503553)
chr3 (696-749)||(26492183-26492236)
chr3 (689-747)||(40993306-40993364)
chr3 (696-740)||(55401112-55401156)
chr3 (697-747)||(10954982-10955032)
chr3 (719-769)||(49179716-49179768)
[»] chr7 (12 HSPs)
chr7 (696-769)||(5937399-5937474)
chr7 (689-761)||(21880166-21880240)
chr7 (687-747)||(7197266-7197326)
chr7 (697-747)||(25956475-25956525)
chr7 (703-747)||(33994242-33994286)
chr7 (689-747)||(598238-598296)
chr7 (725-770)||(10702551-10702597)
chr7 (719-769)||(1885579-1885631)
chr7 (696-747)||(8234176-8234227)
chr7 (689-740)||(21864845-21864896)
chr7 (689-747)||(7973094-7973152)
chr7 (718-747)||(7438736-7438765)
[»] chr4 (16 HSPs)
chr4 (696-769)||(13307883-13307958)
chr4 (689-769)||(44362672-44362754)
chr4 (689-747)||(29205474-29205532)
chr4 (690-747)||(12797310-12797367)
chr4 (696-761)||(21945517-21945584)
chr4 (713-768)||(13117436-13117493)
chr4 (697-747)||(16073424-16073474)
chr4 (689-747)||(23292957-23293015)
chr4 (696-737)||(4157189-4157230)
chr4 (696-737)||(4157476-4157517)
chr4 (696-740)||(34306782-34306826)
chr4 (451-521)||(21570830-21570900)
chr4 (697-747)||(28964227-28964277)
chr4 (689-747)||(49431056-49431114)
chr4 (703-740)||(35157970-35158007)
chr4 (720-762)||(37496717-37496761)
[»] chr2 (14 HSPs)
chr2 (689-740)||(18840984-18841035)
chr2 (697-769)||(43585984-43586058)
chr2 (689-747)||(2438690-2438748)
chr2 (690-747)||(30404822-30404879)
chr2 (689-749)||(15972901-15972961)
chr2 (698-767)||(24067758-24067829)
chr2 (713-770)||(37491850-37491909)
chr2 (709-747)||(5040764-5040802)
chr2 (686-740)||(28596506-28596560)
chr2 (719-769)||(33884057-33884109)
chr2 (689-745)||(21091755-21091811)
chr2 (696-747)||(37559007-37559058)
chr2 (697-743)||(12224257-12224303)
chr2 (725-768)||(37211892-37211937)
[»] chr8 (13 HSPs)
chr8 (689-747)||(31557026-31557084)
chr8 (698-763)||(42874534-42874601)
chr8 (447-506)||(29705884-29705943)
chr8 (689-749)||(44462166-44462226)
chr8 (689-749)||(44469699-44469759)
chr8 (689-740)||(5813629-5813680)
chr8 (689-740)||(33405355-33405406)
chr8 (697-747)||(18407749-18407799)
chr8 (718-769)||(27733853-27733906)
chr8 (689-747)||(36450725-36450783)
chr8 (719-769)||(24295138-24295190)
chr8 (736-769)||(25104613-25104646)
chr8 (703-761)||(40332205-40332265)
[»] chr1 (10 HSPs)
chr1 (689-747)||(1815287-1815345)
chr1 (689-747)||(40258904-40258962)
chr1 (704-747)||(38078647-38078690)
chr1 (689-747)||(18190079-18190137)
chr1 (696-740)||(22515865-22515909)
chr1 (696-740)||(46348361-46348405)
chr1 (708-747)||(51410055-51410094)
chr1 (697-747)||(18337359-18337409)
chr1 (697-738)||(21530728-21530769)
chr1 (698-747)||(37598861-37598910)
[»] chr6 (19 HSPs)
chr6 (689-740)||(32978870-32978921)
chr6 (714-769)||(6751878-6751935)
chr6 (689-747)||(34595164-34595222)
chr6 (719-769)||(19369823-19369875)
chr6 (690-747)||(28152128-28152185)
chr6 (689-761)||(28715309-28715383)
chr6 (689-769)||(32225361-32225443)
chr6 (703-757)||(30851620-30851674)
chr6 (697-738)||(4877982-4878023)
chr6 (696-771)||(26402658-26402737)
chr6 (689-745)||(16833340-16833396)
chr6 (696-735)||(24645523-24645562)
chr6 (726-769)||(10031576-10031621)
chr6 (719-749)||(15489733-15489763)
chr6 (719-774)||(22745958-22746015)
chr6 (565-627)||(28077215-28077277)
chr6 (709-767)||(7377987-7378047)
chr6 (698-747)||(7977810-7977859)
chr6 (698-747)||(27904016-27904065)
[»] scaffold0083 (1 HSPs)
scaffold0083 (696-747)||(45508-45559)
[»] chr5 (14 HSPs)
chr5 (689-740)||(42893397-42893448)
chr5 (724-769)||(15302531-15302576)
chr5 (720-770)||(30080503-30080555)
chr5 (713-749)||(19167571-19167607)
chr5 (708-747)||(15884018-15884057)
chr5 (689-761)||(27932249-27932323)
chr5 (689-761)||(28588645-28588719)
chr5 (697-761)||(30502367-30502433)
chr5 (697-761)||(30542710-30542776)
chr5 (689-747)||(21191027-21191085)
chr5 (697-747)||(21576724-21576774)
chr5 (577-627)||(22976404-22976454)
chr5 (577-623)||(33695359-33695405)
chr5 (690-747)||(23012380-23012437)
[»] scaffold0652 (1 HSPs)
scaffold0652 (689-747)||(433-491)
[»] scaffold0314 (1 HSPs)
scaffold0314 (718-769)||(8954-9007)
[»] scaffold0050 (1 HSPs)
scaffold0050 (690-747)||(70308-70365)
[»] scaffold0053 (1 HSPs)
scaffold0053 (696-740)||(8835-8879)
[»] scaffold0512 (1 HSPs)
scaffold0512 (698-740)||(5016-5058)
[»] scaffold0697 (1 HSPs)
scaffold0697 (697-738)||(1683-1724)


Alignment Details
Target: chr3 (Bit Score: 774; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 774; E-Value: 0
Query Start/End: Original strand, 1 - 903
Target Start/End: Original strand, 14337762 - 14338671
Alignment:
Q  1 ctttattttattttggtcctatggttttgtgtttgaagatttggacgatcttgtagtcaaagaaggcttcatcttcactatattttcatcactaactccc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14337762 ctttattttattttggtcctatggttttgtgtttgaagatttggacgatcttgtagtcaaagaaggcttcatcttcactatattttcatcactaactccc 14337861  T
Q  101 attttctttgcataacgacctgcttcaaagaacctcttaactgcttcatccatgtaatattttccttgcttaacactcatgtctttccctatagtatttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14337862 attttctttgcataacgacctgcttcaaagaacctcttaactgcttcatccatgtaatattttccttgcttaacactcatgtctttccctatagtatttg 14337961  T
Q  201 gataactagtgaagatattgtctccttttagcactgctgcaagttggatcaactcctgctgaaattcacttagctttgcatcttcatttgcctctccctt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14337962 gataactagtgaagatattgtctccttttagcactgctgcaagttggatcaactcctgctgaaattcacttagctttgcatcttcatttgcctctccctt 14338061  T
Q  301 tcttaactttatcggggttggaagctgttctgcaccaaagtaccgatatcaagaatcagcgaagagcgaaacatgttcgaaagatattgttagaaagatt 400  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14338062 tcttaactttatcggggtcggaagctgttctgcaccaaagtaccgatatcaagaatcagcgaagagcaaaacatgttcgaaagatattgttagaaagatt 14338161  T
Q  401 taattcatacatacggcaaatgtgaagagtttgtatactgtcaattaattataaccgtcaaattattataaacgtttgaattctatcattaccacttctg 500  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14338162 taattcatacatacggcaaatgtaaagagtttgtatactgtcaattaattataaccgtcaaattattataaacgtttgaattctatcattaccacttctg 14338261  T
Q  501 aagtcagacacatgattggttatgctatataatttacttatttaatgctttgagaattgattttggctctgttagataaatatagtggatagttgataag 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||| ||||| ||||||||    
T  14338262 aagtcagacacatgattggttatgctatataatttacttatttaatgctttgagaattgattttggttctgtttggtaaatatagcggataattgataag 14338361  T
Q  601 ctaccttatagtttatagcggatagctaataagctagctgatggccttaccaaacagagcccttaa----ttgttgaagcaaaacttttggagtgtccgg 696  Q
    |||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    ||||||||| |||||||||||||||||| |    
T  14338362 ctacctgatagcttatagcggatagctgataagctagctgatggccttaccaaacagagcccttaactgtttgttgaaggaaaacttttggagtgtcccg 14338461  T
Q  697 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatcatgtctgtgtc-gttatcggtgtcc 793  Q
    |||||||| | ||||||||||||||||||||| |||| ||||||||||||  ||||||||| ||||||||||||| |||||||||| ||   ||||||||    
T  14338462 gtgtccgatacgtgtcgtgtctgacaccgacatttgtgattacattgaattatgtcattttttcaaaattttatcgtgtctgtgtctgtgtccggtgtcc 14338561  T
Q  794 gtgtgtgtgttcgtgcttcaaagaaatgagcaactaacctgggcaatcagttctgggttctgtccttgtttgtacaataccttcaaaggttccagcccat 893  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14338562 gtgtatgtgttcgtgcttcaaagaagtgagcaactaacctgggcaatcagttctgggttctgtccttatttgtacaataccttcaaaggttccagcccat 14338661  T
Q  894 tcatctctct 903  Q
    ||||||||||    
T  14338662 tcatctctct 14338671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 689 - 761
Target Start/End: Complemental strand, 20503553 - 20503479
Alignment:
Q  689 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaa 761  Q
    |||||| |||||| |||||||||||||||  ||||||||||||||||||||| |||||  ||||||||| |||||    
T  20503553 gtgtcccggtgtcagacatgtgtcgtgtccaacaccgacacttgtaattacactgaattatgtcattttttcaaa 20503479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 696 - 749
Target Start/End: Original strand, 26492183 - 26492236
Alignment:
Q  696 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaattgt 749  Q
    |||||| ||||||||||||||| |||||||| ||||||||||||| ||||||||    
T  26492183 ggtgtcagacatgtgtcgtgtccgacaccgatacttgtaattacactgaattgt 26492236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 689 - 747
Target Start/End: Original strand, 40993306 - 40993364
Alignment:
Q  689 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    |||||| |||||| ||||||||||||||| ||||||||||| | |||||||| ||||||    
T  40993306 gtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaatt 40993364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 696 - 740
Target Start/End: Complemental strand, 55401156 - 55401112
Alignment:
Q  696 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 740  Q
    |||||| |||| |||||||||| ||||||||||||||||||||||    
T  55401156 ggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattaca 55401112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 697 - 747
Target Start/End: Complemental strand, 10955032 - 10954982
Alignment:
Q  697 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    ||||| |||| |||||||||| ||||||||||||||| |||||| ||||||    
T  10955032 gtgtcggacacgtgtcgtgtccgacaccgacacttgtgattacactgaatt 10954982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 719 - 769
Target Start/End: Original strand, 49179716 - 49179768
Alignment:
Q  719 gacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 769  Q
    ||||||||||||||| ||||||| ||||  ||||| |||||||||||||||||    
T  49179716 gacaccgacacttgtgattacatcgaattatgtcactttctcaaaattttatc 49179768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 4e-16; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 696 - 769
Target Start/End: Original strand, 5937399 - 5937474
Alignment:
Q  696 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 769  Q
    |||||||||||||| ||||| | ||||| ||||||||| ||||||||||||  |||||||||||||||||||||||    
T  5937399 ggtgtccgacatgtatcgtgaccgacacagacacttgtgattacattgaattatgtcattttctcaaaattttatc 5937474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 689 - 761
Target Start/End: Complemental strand, 21880240 - 21880166
Alignment:
Q  689 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaa 761  Q
    |||||| |||||| ||||||||||||||| |||||||||||||||||||||| |||||  ||| |||||||||||    
T  21880240 gtgtcctggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtaattttctcaaa 21880166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 687 - 747
Target Start/End: Original strand, 7197266 - 7197326
Alignment:
Q  687 gagtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    |||| ||| |||||| ||||||||| ||||| |||||||||||||||||||||||||||||    
T  7197266 gagtatcccggtgtcggacatgtgttgtgtccgacaccgacacttgtaattacattgaatt 7197326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 697 - 747
Target Start/End: Complemental strand, 25956525 - 25956475
Alignment:
Q  697 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    ||||||||||||| ||||||| ||||||||||||||| |||||||||||||    
T  25956525 gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaatt 25956475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 703 - 747
Target Start/End: Complemental strand, 33994286 - 33994242
Alignment:
Q  703 gacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    ||||||||||||||||||||||||||||||||||| || ||||||    
T  33994286 gacatgtgtcgtgtctgacaccgacacttgtaattgcactgaatt 33994242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 689 - 747
Target Start/End: Complemental strand, 598296 - 598238
Alignment:
Q  689 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    |||||| |||||| |||| ||||||||||||||||||||||||  ||||||||| ||||    
T  598296 gtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacttacaattacatttaatt 598238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 725 - 770
Target Start/End: Original strand, 10702551 - 10702597
Alignment:
Q  725 gacacttgtaattacattgaat-tgtcattttctcaaaattttatca 770  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||    
T  10702551 gacacttataattacattgaatatgtcattttctcaaaattttatca 10702597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 719 - 769
Target Start/End: Complemental strand, 1885631 - 1885579
Alignment:
Q  719 gacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 769  Q
    ||||||||||||||| ||||||||||||  ||||||||| |||||||||||||    
T  1885631 gacaccgacacttgtgattacattgaattatgtcattttttcaaaattttatc 1885579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 696 - 747
Target Start/End: Complemental strand, 8234227 - 8234176
Alignment:
Q  696 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    |||||| ||||||||||||||| ||||||| ||||||||| |||| ||||||    
T  8234227 ggtgtcggacatgtgtcgtgtccgacaccggcacttgtaactacactgaatt 8234176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 740
Target Start/End: Complemental strand, 21864896 - 21864845
Alignment:
Q  689 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 740  Q
    |||||| |||||| |||| |||||||||| |||| |||||||||||||||||    
T  21864896 gtgtcccggtgtcggacacgtgtcgtgtccgacagcgacacttgtaattaca 21864845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 689 - 747
Target Start/End: Original strand, 7973094 - 7973152
Alignment:
Q  689 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    |||||| | |||| |||||||||||||||| ||||| ||| ||||||||||||| ||||    
T  7973094 gtgtcccgatgtcggacatgtgtcgtgtctcacaccaacatttgtaattacattaaatt 7973152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 718 - 747
Target Start/End: Complemental strand, 7438765 - 7438736
Alignment:
Q  718 tgacaccgacacttgtaattacattgaatt 747  Q
    ||||||||||||||||||||||||||||||    
T  7438765 tgacaccgacacttgtaattacattgaatt 7438736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 4e-16; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 696 - 769
Target Start/End: Complemental strand, 13307958 - 13307883
Alignment:
Q  696 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 769  Q
    |||||| |||| |||||||||| |||||| |||||||| ||||||||||||  |||||||||||||||||||||||    
T  13307958 ggtgtctgacacgtgtcgtgtccgacaccaacacttgtgattacattgaattatgtcattttctcaaaattttatc 13307883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 689 - 769
Target Start/End: Complemental strand, 44362754 - 44362672
Alignment:
Q  689 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 769  Q
    |||||| | ||||||| | ||||||||||||||||| |||||||| |||||||| |||  |||||||||||||||||||||||    
T  44362754 gtgtcccgatgtccgatacgtgtcgtgtctgacaccaacacttgtgattacattaaattatgtcattttctcaaaattttatc 44362672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 689 - 747
Target Start/End: Complemental strand, 29205532 - 29205474
Alignment:
Q  689 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    |||||| |||||| |||||||||||||||  ||||||||||||||||||||| ||||||    
T  29205532 gtgtcccggtgtcggacatgtgtcgtgtccaacaccgacacttgtaattacactgaatt 29205474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 690 - 747
Target Start/End: Original strand, 12797310 - 12797367
Alignment:
Q  690 tgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    ||||| |||||| ||||||| ||||||| |||||||||||||||||||||| ||||||    
T  12797310 tgtcccggtgtcagacatgtatcgtgtccgacaccgacacttgtaattacactgaatt 12797367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 696 - 761
Target Start/End: Complemental strand, 21945584 - 21945517
Alignment:
Q  696 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaa 761  Q
    |||||| |||||||||| |||| |||||||||||||||||||||| |||||  ||||||||| |||||    
T  21945584 ggtgtcggacatgtgtcatgtccgacaccgacacttgtaattacactgaattatgtcattttttcaaa 21945517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 713 - 768
Target Start/End: Complemental strand, 13117493 - 13117436
Alignment:
Q  713 gtgtctgacaccgacacttgtaattacattgaa--ttgtcattttctcaaaattttat 768  Q
    ||||| ||||||||||||||| |||||||||||  ||||||||||||| |||||||||    
T  13117493 gtgtccgacaccgacacttgtgattacattgaattttgtcattttctccaaattttat 13117436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 697 - 747
Target Start/End: Complemental strand, 16073474 - 16073424
Alignment:
Q  697 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    ||||| ||||||| ||||||| |||||||||||||||||||||| ||||||    
T  16073474 gtgtcggacatgtatcgtgtccgacaccgacacttgtaattacactgaatt 16073424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 689 - 747
Target Start/End: Original strand, 23292957 - 23293015
Alignment:
Q  689 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    |||||| |||||| |||| |||||||||| |||||||||||||||||||| | ||||||    
T  23292957 gtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattatactgaatt 23293015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 696 - 737
Target Start/End: Complemental strand, 4157230 - 4157189
Alignment:
Q  696 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 737  Q
    |||||| ||||||||||||||| |||||||||||||||||||    
T  4157230 ggtgtcggacatgtgtcgtgtccgacaccgacacttgtaatt 4157189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 696 - 737
Target Start/End: Complemental strand, 4157517 - 4157476
Alignment:
Q  696 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 737  Q
    |||||| ||||||||||||||| |||||||||||||||||||    
T  4157517 ggtgtcggacatgtgtcgtgtccgacaccgacacttgtaatt 4157476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 696 - 740
Target Start/End: Original strand, 34306782 - 34306826
Alignment:
Q  696 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 740  Q
    |||||| |||| |||||||||| ||||||||||||||||||||||    
T  34306782 ggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattaca 34306826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 451 - 521
Target Start/End: Original strand, 21570830 - 21570900
Alignment:
Q  451 ataaccgtcaaattattataaacgtttgaattctatcattaccacttctgaagtcagacacatgattggtt 521  Q
    |||||||||| || |||| ||| |||||| || |||||| || |||||| |||||| ||||||||||||||    
T  21570830 ataaccgtcacataattagaaatgtttgacttttatcatgacgacttctaaagtcacacacatgattggtt 21570900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 697 - 747
Target Start/End: Original strand, 28964227 - 28964277
Alignment:
Q  697 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    ||||| || |||||||||||| ||||| |||||||||||||||| ||||||    
T  28964227 gtgtcggatatgtgtcgtgtccgacacagacacttgtaattacactgaatt 28964277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 689 - 747
Target Start/End: Complemental strand, 49431114 - 49431056
Alignment:
Q  689 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    |||||| |||||  |||| |||||||||| ||||||||||||| |||||||| ||||||    
T  49431114 gtgtcccggtgttggacacgtgtcgtgtccgacaccgacacttttaattacactgaatt 49431056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 703 - 740
Target Start/End: Original strand, 35157970 - 35158007
Alignment:
Q  703 gacatgtgtcgtgtctgacaccgacacttgtaattaca 740  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  35157970 gacatgtgtcgtgtcagacaccgacacttataattaca 35158007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 720 - 762
Target Start/End: Complemental strand, 37496761 - 37496717
Alignment:
Q  720 acaccgacacttgtaattacattgaat--tgtcattttctcaaaa 762  Q
    |||||||||||||| ||||||||||||  ||||||||||||||||    
T  37496761 acaccgacacttgtgattacattgaattatgtcattttctcaaaa 37496717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 689 - 740
Target Start/End: Original strand, 18840984 - 18841035
Alignment:
Q  689 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 740  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  18840984 gtgtcccggtgtcggacatgtgtcgtgtctgacaccgacacttgtaattaca 18841035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 697 - 769
Target Start/End: Original strand, 43585984 - 43586058
Alignment:
Q  697 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 769  Q
    ||||| |||| || ||||||| ||||||||||||||| ||||||||||||  |||||||||||||||||||||||    
T  43585984 gtgtctgacacgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcattttctcaaaattttatc 43586058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 689 - 747
Target Start/End: Original strand, 2438690 - 2438748
Alignment:
Q  689 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    |||||| |||||| ||||||||||||||| |||||||||||||||||||||| ||||||    
T  2438690 gtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaatt 2438748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 690 - 747
Target Start/End: Original strand, 30404822 - 30404879
Alignment:
Q  690 tgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    ||||| |||||| ||||||||||||||| ||| |||||||||||||||||| ||||||    
T  30404822 tgtcctggtgtcggacatgtgtcgtgtccgacgccgacacttgtaattacactgaatt 30404879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 689 - 749
Target Start/End: Complemental strand, 15972961 - 15972901
Alignment:
Q  689 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaattgt 749  Q
    |||||| || ||| |||| |||||||||| |||||||||||||||||||||| ||||||||    
T  15972961 gtgtcccggcgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactgaattgt 15972901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 698 - 767
Target Start/End: Complemental strand, 24067829 - 24067758
Alignment:
Q  698 tgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaatttta 767  Q
    |||| |||| |||||||||||||||||||||||||| ||| |||| |||  || ||||||||||||||||||    
T  24067829 tgtctgacacgtgtcgtgtctgacaccgacacttgtgatttcatttaattatgacattttctcaaaatttta 24067758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 713 - 770
Target Start/End: Original strand, 37491850 - 37491909
Alignment:
Q  713 gtgtctgacaccgacacttgtaattacattgaatt--gtcattttctcaaaattttatca 770  Q
    ||||||||||||||||| | |||||||||||||||  || ||||||||||||||||||||    
T  37491850 gtgtctgacaccgacacatttaattacattgaattaagttattttctcaaaattttatca 37491909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 709 - 747
Target Start/End: Complemental strand, 5040802 - 5040764
Alignment:
Q  709 tgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  5040802 tgtcgtgtccgacaccgacacttgtaattacattgaatt 5040764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 686 - 740
Target Start/End: Complemental strand, 28596560 - 28596506
Alignment:
Q  686 ggagtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 740  Q
    |||||||||| ||||| |||| |||||||||| ||||||||||||| ||||||||    
T  28596560 ggagtgtccgagtgtcggacacgtgtcgtgtccgacaccgacacttataattaca 28596506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 719 - 769
Target Start/End: Complemental strand, 33884109 - 33884057
Alignment:
Q  719 gacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 769  Q
    |||||||||||||||||||||| |||||  ||||||||||||| |||||||||    
T  33884109 gacaccgacacttgtaattacactgaatcatgtcattttctcacaattttatc 33884057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 689 - 745
Target Start/End: Complemental strand, 21091811 - 21091755
Alignment:
Q  689 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaa 745  Q
    |||||| ||||||||||| ||| | |||||||||| |||||||||||||||| ||||    
T  21091811 gtgtcccggtgtccgacaggtggcttgtctgacactgacacttgtaattacactgaa 21091755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 696 - 747
Target Start/End: Complemental strand, 37559058 - 37559007
Alignment:
Q  696 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    |||||| |||| |||||  ||| |||||||||||||||||||||||||||||    
T  37559058 ggtgtcggacacgtgtcaagtccgacaccgacacttgtaattacattgaatt 37559007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 697 - 743
Target Start/End: Complemental strand, 12224303 - 12224257
Alignment:
Q  697 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattg 743  Q
    ||||| |||| || ||||||| |||||||||||||||||||||||||    
T  12224303 gtgtcggacacgtatcgtgtccgacaccgacacttgtaattacattg 12224257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 725 - 768
Target Start/End: Original strand, 37211892 - 37211937
Alignment:
Q  725 gacacttgtaattacattgaat--tgtcattttctcaaaattttat 768  Q
    ||||||||||||||||||||||  |||||||||||| |||||||||    
T  37211892 gacacttgtaattacattgaattgtgtcattttctcgaaattttat 37211937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 689 - 747
Target Start/End: Complemental strand, 31557084 - 31557026
Alignment:
Q  689 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    |||||| |||||| |||||||||||||||||||||||| ||||||||||||| ||||||    
T  31557084 gtgtcctggtgtcggacatgtgtcgtgtctgacaccgaaacttgtaattacactgaatt 31557026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 698 - 763
Target Start/End: Complemental strand, 42874601 - 42874534
Alignment:
Q  698 tgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaat 763  Q
    |||||||||||||| |||||  |||| ||||||||| ||||||||||||  |||||||||||||||||    
T  42874601 tgtccgacatgtgttgtgtccaacactgacacttgtgattacattgaattatgtcattttctcaaaat 42874534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 447 - 506
Target Start/End: Original strand, 29705884 - 29705943
Alignment:
Q  447 aattataaccgtcaaattattataaacgtttgaattctatcattaccacttctgaagtca 506  Q
    |||||||||||| |||| ||||||||||||||| || |||||| ||||||||| ||||||    
T  29705884 aattataaccgttaaatcattataaacgtttgacttttatcataaccacttctaaagtca 29705943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 689 - 749
Target Start/End: Original strand, 44462166 - 44462226
Alignment:
Q  689 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaattgt 749  Q
    |||||| |||||| ||||||| ||||||||||||||||||| | | |||| ||||||||||    
T  44462166 gtgtcccggtgtcggacatgtatcgtgtctgacaccgacacatatgattaaattgaattgt 44462226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 689 - 749
Target Start/End: Original strand, 44469699 - 44469759
Alignment:
Q  689 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaattgt 749  Q
    |||||| |||||| ||||||| ||||||||||||||||||| | | |||| ||||||||||    
T  44469699 gtgtcccggtgtcggacatgtatcgtgtctgacaccgacacatatgattaaattgaattgt 44469759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 740
Target Start/End: Complemental strand, 5813680 - 5813629
Alignment:
Q  689 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 740  Q
    |||||| |||||| |||| |||||||||| |||||||||||||||| |||||    
T  5813680 gtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtatttaca 5813629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 740
Target Start/End: Original strand, 33405355 - 33405406
Alignment:
Q  689 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 740  Q
    |||||| |||||| ||||||||||||||| ||||||||||| | ||||||||    
T  33405355 gtgtccaggtgtcagacatgtgtcgtgtccgacaccgacacatataattaca 33405406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 697 - 747
Target Start/End: Complemental strand, 18407799 - 18407749
Alignment:
Q  697 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    ||||| ||||||||||||||| | || ||||||||||||||||| ||||||    
T  18407799 gtgtcggacatgtgtcgtgtccggcagcgacacttgtaattacactgaatt 18407749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 718 - 769
Target Start/End: Complemental strand, 27733906 - 27733853
Alignment:
Q  718 tgacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 769  Q
    ||||||| |||||||| ||||||||||||  | |||||||||||||||||||||    
T  27733906 tgacaccaacacttgtgattacattgaattatatcattttctcaaaattttatc 27733853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 689 - 747
Target Start/End: Original strand, 36450725 - 36450783
Alignment:
Q  689 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    |||||| |||||| |||| | |||||||| |||||| ||||||||||||||| ||||||    
T  36450725 gtgtcctggtgtcggacacgcgtcgtgtccgacacctacacttgtaattacactgaatt 36450783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 719 - 769
Target Start/End: Original strand, 24295138 - 24295190
Alignment:
Q  719 gacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 769  Q
    ||||||||||||||| |||||||| |||  ||||||||||||| |||||||||    
T  24295138 gacaccgacacttgtgattacattaaattgtgtcattttctcacaattttatc 24295190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 736 - 769
Target Start/End: Original strand, 25104613 - 25104646
Alignment:
Q  736 ttacattgaattgtcattttctcaaaattttatc 769  Q
    |||||||||||||||||||| |||||||||||||    
T  25104613 ttacattgaattgtcattttgtcaaaattttatc 25104646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 703 - 761
Target Start/End: Complemental strand, 40332265 - 40332205
Alignment:
Q  703 gacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaa 761  Q
    |||| ||||||||||  ||||||||||||||||||||| |||||  ||| |||||||||||    
T  40332265 gacacgtgtcgtgtcccacaccgacacttgtaattacactgaattatgtgattttctcaaa 40332205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 689 - 747
Target Start/End: Complemental strand, 1815345 - 1815287
Alignment:
Q  689 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    |||||| |||||| ||||||||||||||| |||||||||||||||||||||| ||||||    
T  1815345 gtgtcccggtgtcggacatgtgtcgtgtcggacaccgacacttgtaattacactgaatt 1815287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 689 - 747
Target Start/End: Original strand, 40258904 - 40258962
Alignment:
Q  689 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    |||||| |||||| |||| ||||||||||||||||||||||||||||||||| ||||||    
T  40258904 gtgtcctggtgtcggacaggtgtcgtgtctgacaccgacacttgtaattacactgaatt 40258962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 704 - 747
Target Start/End: Original strand, 38078647 - 38078690
Alignment:
Q  704 acatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  38078647 acatgtgtcgtgtccgacaccgacacttgtaattacattgaatt 38078690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 689 - 747
Target Start/End: Original strand, 18190079 - 18190137
Alignment:
Q  689 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    |||||| |||||| |||| |||| |||||||||| ||||||||||||||||| ||||||    
T  18190079 gtgtcccggtgtcggacacgtgttgtgtctgacatcgacacttgtaattacactgaatt 18190137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 696 - 740
Target Start/End: Original strand, 22515865 - 22515909
Alignment:
Q  696 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 740  Q
    |||||| || |||||||||||| ||||||||||||||||||||||    
T  22515865 ggtgtcggatatgtgtcgtgtccgacaccgacacttgtaattaca 22515909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 696 - 740
Target Start/End: Original strand, 46348361 - 46348405
Alignment:
Q  696 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 740  Q
    |||||| |||| |||||||||| ||||||||||||||||||||||    
T  46348361 ggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattaca 46348405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 708 - 747
Target Start/End: Complemental strand, 51410094 - 51410055
Alignment:
Q  708 gtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  51410094 gtgtcgtgtccgacaccgacacttgtaattacactgaatt 51410055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 697 - 747
Target Start/End: Complemental strand, 18337409 - 18337359
Alignment:
Q  697 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    ||||| |||| |||| ||||| |||||||||||||||||||||| ||||||    
T  18337409 gtgtcggacacgtgttgtgtccgacaccgacacttgtaattacactgaatt 18337359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 697 - 738
Target Start/End: Complemental strand, 21530769 - 21530728
Alignment:
Q  697 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaatta 738  Q
    ||||| ||||||||||||||| ||||||||||||| ||||||    
T  21530769 gtgtcggacatgtgtcgtgtccgacaccgacacttataatta 21530728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 698 - 747
Target Start/End: Complemental strand, 37598910 - 37598861
Alignment:
Q  698 tgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    |||| |||| |||||||||| ||||||||||||| |||||||| ||||||    
T  37598910 tgtcggacacgtgtcgtgtccgacaccgacacttataattacactgaatt 37598861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 689 - 740
Target Start/End: Original strand, 32978870 - 32978921
Alignment:
Q  689 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 740  Q
    |||||| |||||| ||||||||||||||| ||||||||||||||||||||||    
T  32978870 gtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattaca 32978921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 714 - 769
Target Start/End: Original strand, 6751878 - 6751935
Alignment:
Q  714 tgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 769  Q
    |||| ||||||||||||||| ||||||||||||  |||||||||||||||||||||||    
T  6751878 tgtccgacaccgacacttgtgattacattgaattatgtcattttctcaaaattttatc 6751935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 689 - 747
Target Start/End: Complemental strand, 34595222 - 34595164
Alignment:
Q  689 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    |||||| |||||| |||| |||||||||| |||||||||||||||||||||| ||||||    
T  34595222 gtgtcccggtgtcagacacgtgtcgtgtccgacaccgacacttgtaattacactgaatt 34595164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 719 - 769
Target Start/End: Complemental strand, 19369875 - 19369823
Alignment:
Q  719 gacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 769  Q
    ||||||||||||||| ||||||||||||  |||||||||||||||||||||||    
T  19369875 gacaccgacacttgtgattacattgaattatgtcattttctcaaaattttatc 19369823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 690 - 747
Target Start/End: Complemental strand, 28152185 - 28152128
Alignment:
Q  690 tgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    ||||| |||||| |||| |||||||||| |||||||||||||||||||||| ||||||    
T  28152185 tgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactgaatt 28152128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 689 - 761
Target Start/End: Complemental strand, 28715383 - 28715309
Alignment:
Q  689 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaa 761  Q
    |||||| ||||||  ||| |||||||||| |||||||||||||||||||||| |||||  ||||||||| |||||    
T  28715383 gtgtcccggtgtcgaacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtcattttttcaaa 28715309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 689 - 769
Target Start/End: Original strand, 32225361 - 32225443
Alignment:
Q  689 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 769  Q
    |||||| ||||||||||| | |||||||| ||||||||||| ||| |||||||||| |   || |||||||||||||||||||    
T  32225361 gtgtccaggtgtccgacaggggtcgtgtccgacaccgacacctgtgattacattgactcacgttattttctcaaaattttatc 32225443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 703 - 757
Target Start/End: Complemental strand, 30851674 - 30851620
Alignment:
Q  703 gacatgtgtcgtgtctgacaccgacacttgtaattacattgaattgtcattttct 757  Q
    |||| |||||||||| ||||||||||| | ||||||||||||||||| |||||||    
T  30851674 gacacgtgtcgtgtccgacaccgacacatataattacattgaattgtgattttct 30851620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 697 - 738
Target Start/End: Complemental strand, 4878023 - 4877982
Alignment:
Q  697 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaatta 738  Q
    ||||| ||||||||||||||| ||||||||||||||||||||    
T  4878023 gtgtcggacatgtgtcgtgtccgacaccgacacttgtaatta 4877982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 696 - 771
Target Start/End: Original strand, 26402658 - 26402737
Alignment:
Q  696 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtca--ttttctcaaaattttatcat 771  Q
    ||||||| |||||| ||||||| ||||||||||||||| |||||| |||||  |||||  |||| |||||||||||||||    
T  26402658 ggtgtccaacatgtatcgtgtccgacaccgacacttgtgattacactgaattatgtcattttttttcaaaattttatcat 26402737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 689 - 745
Target Start/End: Complemental strand, 16833396 - 16833340
Alignment:
Q  689 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaa 745  Q
    |||||| |||||| |||  ||||||||||| ||||||||||||||||||||| ||||    
T  16833396 gtgtcctggtgtcggacgcgtgtcgtgtctaacaccgacacttgtaattacactgaa 16833340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 696 - 735
Target Start/End: Complemental strand, 24645562 - 24645523
Alignment:
Q  696 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaa 735  Q
    |||||| |||| ||||||||||||||||||||||||||||    
T  24645562 ggtgtcggacacgtgtcgtgtctgacaccgacacttgtaa 24645523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 726 - 769
Target Start/End: Complemental strand, 10031621 - 10031576
Alignment:
Q  726 acacttgtaattacattgaatt--gtcattttctcaaaattttatc 769  Q
    |||||||| |||||||||||||  ||||||||||||||||||||||    
T  10031621 acacttgtgattacattgaattatgtcattttctcaaaattttatc 10031576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 719 - 749
Target Start/End: Original strand, 15489733 - 15489763
Alignment:
Q  719 gacaccgacacttgtaattacattgaattgt 749  Q
    |||||||||||||||||||||||||||||||    
T  15489733 gacaccgacacttgtaattacattgaattgt 15489763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 719 - 774
Target Start/End: Complemental strand, 22746015 - 22745958
Alignment:
Q  719 gacaccgacacttgtaattacattgaattgt--cattttctcaaaattttatcatgtc 774  Q
    ||||||||||||||| ||||||||||| | |  |||||||||||||||||||| ||||    
T  22746015 gacaccgacacttgtgattacattgaaatataacattttctcaaaattttatcgtgtc 22745958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 565 - 627
Target Start/End: Complemental strand, 28077277 - 28077215
Alignment:
Q  565 ggctctgttagataaatatagtggatagttgataagctaccttatagtttatagcggatagct 627  Q
    ||||||||| | |||| |||| |||||||| ||||||||||| |||| ||||||| |||||||    
T  28077277 ggctctgtttggtaaaaatagcggatagtttataagctacctgatagcttatagctgatagct 28077215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 709 - 767
Target Start/End: Complemental strand, 7378047 - 7377987
Alignment:
Q  709 tgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaatttta 767  Q
    ||||||||| ||||||||||| | ||||||||||||||  ||| ||||||||||| |||||    
T  7378047 tgtcgtgtccgacaccgacacatataattacattgaattatgtgattttctcaaattttta 7377987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 698 - 747
Target Start/End: Original strand, 7977810 - 7977859
Alignment:
Q  698 tgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    |||| ||||| ||| ||||| |||||||||||||||||||||| ||||||    
T  7977810 tgtcggacatatgttgtgtccgacaccgacacttgtaattacactgaatt 7977859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 698 - 747
Target Start/End: Original strand, 27904016 - 27904065
Alignment:
Q  698 tgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    |||| ||| ||| |||||||||||||||||| ||||||||||| ||||||    
T  27904016 tgtcagacttgtctcgtgtctgacaccgacatttgtaattacactgaatt 27904065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 696 - 747
Target Start/End: Original strand, 45508 - 45559
Alignment:
Q  696 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    |||||| |||| |||||||||| |||||||||||||||||||||| ||||||    
T  45508 ggtgtcagacacgtgtcgtgtccgacaccgacacttgtaattacactgaatt 45559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000009; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 689 - 740
Target Start/End: Complemental strand, 42893448 - 42893397
Alignment:
Q  689 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 740  Q
    |||||| |||||| |||| |||| ||||||||||||||||||||||||||||    
T  42893448 gtgtcctggtgtcggacacgtgttgtgtctgacaccgacacttgtaattaca 42893397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 724 - 769
Target Start/End: Complemental strand, 15302576 - 15302531
Alignment:
Q  724 cgacacttgtaattacattgaattgtcattttctcaaaattttatc 769  Q
    |||||||||| ||||| ||||||||||||||| |||||||||||||    
T  15302576 cgacacttgtgattaccttgaattgtcattttttcaaaattttatc 15302531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 720 - 770
Target Start/End: Original strand, 30080503 - 30080555
Alignment:
Q  720 acaccgacacttgtaattacattgaatt--gtcattttctcaaaattttatca 770  Q
    ||||||| |||||| |||||||||||||  |||||||||||||||||||||||    
T  30080503 acaccgatacttgtgattacattgaattatgtcattttctcaaaattttatca 30080555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 713 - 749
Target Start/End: Original strand, 19167571 - 19167607
Alignment:
Q  713 gtgtctgacaccgacacttgtaattacattgaattgt 749  Q
    ||||||||||||||||||||| |||||||||||||||    
T  19167571 gtgtctgacaccgacacttgtgattacattgaattgt 19167607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 708 - 747
Target Start/End: Complemental strand, 15884057 - 15884018
Alignment:
Q  708 gtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  15884057 gtgtcgtgtccgacaccgacacttgtaattacactgaatt 15884018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 761
Target Start/End: Complemental strand, 27932323 - 27932249
Alignment:
Q  689 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaa 761  Q
    |||||| ||||||||||| |||||||||| |||||| | | ||||||||||| |||||  ||| |||||||||||    
T  27932323 gtgtcctggtgtccgacacgtgtcgtgtccgacaccaagatttgtaattacactgaattatgtaattttctcaaa 27932249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 761
Target Start/End: Original strand, 28588645 - 28588719
Alignment:
Q  689 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaa 761  Q
    |||||| |||||| || |||||||||||| ||||||||||| | |||||||| |||||  ||| |||||||||||    
T  28588645 gtgtcctggtgtcagatatgtgtcgtgtccgacaccgacacctataattacactgaattatgtgattttctcaaa 28588719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 697 - 761
Target Start/End: Original strand, 30502367 - 30502433
Alignment:
Q  697 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt--gtcattttctcaaa 761  Q
    ||||| ||||||||||||||| ||||||||||| | |||||||| ||||||  || |||||||||||    
T  30502367 gtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaattaagtgattttctcaaa 30502433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 697 - 761
Target Start/End: Original strand, 30542710 - 30542776
Alignment:
Q  697 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt--gtcattttctcaaa 761  Q
    ||||| ||||||||||||||| ||||||||||| | |||||||| ||||||  || |||||||||||    
T  30542710 gtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaattaagtgattttctcaaa 30542776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 689 - 747
Target Start/End: Original strand, 21191027 - 21191085
Alignment:
Q  689 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    |||||| || ||| |||| |||| ||||| |||||||||||||||||||||| ||||||    
T  21191027 gtgtcccggagtcggacacgtgttgtgtccgacaccgacacttgtaattacactgaatt 21191085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 697 - 747
Target Start/End: Original strand, 21576724 - 21576774
Alignment:
Q  697 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    ||||| |||| |||||||||| |||| ||||||||||||||||| ||||||    
T  21576724 gtgtcagacacgtgtcgtgtccgacatcgacacttgtaattacactgaatt 21576774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 577 - 627
Target Start/End: Original strand, 22976404 - 22976454
Alignment:
Q  577 taaatatagtggatagttgataagctaccttatagtttatagcggatagct 627  Q
    |||| |||| |||||| |||||||||| ||||||||||||||| |||||||    
T  22976404 taaaaatagcggatagctgataagctagcttatagtttatagctgatagct 22976454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 577 - 623
Target Start/End: Complemental strand, 33695405 - 33695359
Alignment:
Q  577 taaatatagtggatagttgataagctaccttatagtttatagcggat 623  Q
    |||| |||| ||||||||||||||||| || ||||||||||||||||    
T  33695405 taaaaatagcggatagttgataagctagctgatagtttatagcggat 33695359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 690 - 747
Target Start/End: Original strand, 23012380 - 23012437
Alignment:
Q  690 tgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    ||||| |||||| |||||||||||||||  |||||||||| | |||||||||| ||||    
T  23012380 tgtcccggtgtcagacatgtgtcgtgtccaacaccgacacatataattacattaaatt 23012437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 689 - 747
Target Start/End: Original strand, 433 - 491
Alignment:
Q  689 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    |||||| |||||| |||| | |||||||| |||||||||||||||||||||| ||||||    
T  433 gtgtcccggtgtcggacacgcgtcgtgtccgacaccgacacttgtaattacactgaatt 491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 718 - 769
Target Start/End: Complemental strand, 9007 - 8954
Alignment:
Q  718 tgacaccgacacttgtaattacattgaatt--gtcattttctcaaaattttatc 769  Q
    |||||||||||||||| ||||| |||||||  ||||||||||||||||||||||    
T  9007 tgacaccgacacttgtgattacgttgaattatgtcattttctcaaaattttatc 8954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 690 - 747
Target Start/End: Complemental strand, 70365 - 70308
Alignment:
Q  690 tgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 747  Q
    ||||| |||||| |||| |||||||||| ||||||||||||| |||||||| ||||||    
T  70365 tgtcctggtgtcggacacgtgtcgtgtccgacaccgacacttataattacactgaatt 70308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 696 - 740
Target Start/End: Complemental strand, 8879 - 8835
Alignment:
Q  696 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 740  Q
    |||||| |||| |||||||||| ||||||||||||||||||||||    
T  8879 ggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattaca 8835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0512 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 698 - 740
Target Start/End: Original strand, 5016 - 5058
Alignment:
Q  698 tgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 740  Q
    |||| |||| |||||||||| ||||||||||||||||||||||    
T  5016 tgtcggacacgtgtcgtgtccgacaccgacacttgtaattaca 5058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 697 - 738
Target Start/End: Complemental strand, 1724 - 1683
Alignment:
Q  697 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaatta 738  Q
    ||||| ||||||||||||||| ||||||||||||| ||||||    
T  1724 gtgtcggacatgtgtcgtgtccgacaccgacacttataatta 1683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University