View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11040_high_11 (Length: 507)
Name: NF11040_high_11
Description: NF11040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11040_high_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 2 - 489
Target Start/End: Complemental strand, 30358426 - 30357939
Alignment:
| Q |
2 |
cgaatactttttaggaatctttggaaaactccaaattaaattaaatgatatgacatgtgagcacaatgcaccatagtaaaaccaaaccaactaaaaattc |
101 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30358426 |
cgaatactttttaggaatctttcgaaaactccaaattgaattaaatgatatgacacgtgagcacaatgcaccatagtaaaaccaaaccaactaaaaattc |
30358327 |
T |
|
| Q |
102 |
gattctaaattctcnnnnnnnn-tcataagatagaaaaaatgatcaatatcctccaccttgtcgtaaccacccacacaaagctgtgtctcccaaaagttg |
200 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
30358326 |
aattctaaattctcccaaaaaaatcataagataaaaaaaatgatcaatatcctccaccttatcgcaaccacccacacatggctgtgtctcccaaaagttg |
30358227 |
T |
|
| Q |
201 |
aatcattaaacactaatataggttattgggttgaatgtgcagggggagtaggtgcaaagttgcacaagacttttggtacatcttttaccagagttctcct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30358226 |
aatcattaaacactaatataggttattgggttgaatgtgtagggggagtagatgcaaagttgcacaagacttttgttacatcttttaccagagttctcct |
30358127 |
T |
|
| Q |
301 |
actgtgcgtaatgaaatttgctttggcatttacaaataaaaataaaacactaacgtacgtaggaacgtttgattttgtgtcaacctatgtagttgcgctg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30358126 |
actgtgcgtaatgaaatttgctttggcatttacaaat-aaaataaaacactaacgtacgtaggaacgtttgattttgtgtcaacctatgtagttgcgctg |
30358028 |
T |
|
| Q |
401 |
cattttgtacatcgtactaatgcatataaataattgaatgagaacatgcaaaggaaatttcatcaagctcctgtgctgcaggctgtacc |
489 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30358027 |
cattttgtacatcgtactaatgcatataaataattgaatgagaacatgcaaaggaaatttcatcaagctcctgtgctgcaggctgtacc |
30357939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University