View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11040_high_13 (Length: 472)
Name: NF11040_high_13
Description: NF11040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11040_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 11 - 381
Target Start/End: Original strand, 39304401 - 39304771
Alignment:
| Q |
11 |
cacagaaaaccctgaaactcattgtttaaaaacaatcaacaacaataatcataatcatcatcacaatagcaataaagaacaagatcgttttcttcctata |
110 |
Q |
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| T |
39304401 |
cacagaaaaccctgaaactcattgtttaaaaacaatcaacaacaataatcataatcatcatcacaatagcaataaagaacaagatcgttttcttcctata |
39304500 |
T |
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| Q |
111 |
gcaaatgttggtagaataatgaaaaaagttattcctgcaaatggaaaaatctcaaaggatgcaaaagagacagttcaagaatgtgtgtcggagttcataa |
210 |
Q |
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| T |
39304501 |
gcaaatgttggtagaataatgaaaaaagttattcctgcaaatggaaaaatctcaaaggatgcaaaagagacagttcaagaatgtgtgtcggagttcataa |
39304600 |
T |
|
| Q |
211 |
gttttgtcaccggggaagcatcggataaatgtcaaagagaaaaaagaaagacaatcaatggtgatgatattatttgggctattacaacgttaggctttga |
310 |
Q |
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| T |
39304601 |
gttttgtcaccggggaagcatcggataaatgtcaaagagaaaaaagaaagacaatcaacggtgatgatattatttgggctattacaacgttaggctttga |
39304700 |
T |
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| Q |
311 |
agaatatgtggaaccattaaaatgttaccttcaaaaatatagagatattgaaggtgagaaagttaatgttc |
381 |
Q |
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| T |
39304701 |
agaatatgtggaaccattaaaatgttaccttcaaaaatatagagatattgaaggtgagaaagttaatgttc |
39304771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 142 - 298
Target Start/End: Original strand, 38281618 - 38281774
Alignment:
| Q |
142 |
ttcctgcaaatggaaaaatctcaaaggatgcaaaagagacagttcaagaatgtgtgtcggagttcataagttttgtcaccggggaagcatcggataaatg |
241 |
Q |
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| T |
38281618 |
ttccagcaaatgctaaaatctcaaaagaagcaaaagaaacggttcaagaatgtgtctctgagttcattagtttcattactggtgaagcttctgataagtg |
38281717 |
T |
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| Q |
242 |
tcaaagagaaaaaagaaagacaatcaatggtgatgatattatttgggctattacaac |
298 |
Q |
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| T |
38281718 |
tcagagagaaaaaaggaaaacaattaatggtgatgatcttctttgggctatgacaac |
38281774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 44105492 - 44105545
Alignment:
| Q |
84 |
aaagaacaagatcgttttcttcctatagcaaatgttggtagaataatgaaaaaag |
138 |
Q |
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| T |
44105492 |
aaagaacaagatcgttttc-tcctatagccaatgtgggtagaatcatgaaaaaag |
44105545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 189 - 313
Target Start/End: Original strand, 41866626 - 41866750
Alignment:
| Q |
189 |
gaatgtgtgtcggagttcataagttttgtcaccggggaagcatcggataaatgtcaaagagaaaaaagaaagacaatcaatggtgatgatattatttggg |
288 |
Q |
| |
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|||||||| ||||||||||| || || ||||||| ||||| || ||||| ||||| ||||| ||| ||||||| ||||| || || ||| | |||||| |
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| T |
41866626 |
gaatgtgtatcggagttcatcagcttcatcaccggtgaagcttccgataagtgtcagagagagaaacgaaagacgatcaacggcgacgatctactttggg |
41866725 |
T |
|
| Q |
289 |
ctattacaacgttaggctttgaaga |
313 |
Q |
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| || || |||||||| |||||||| |
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| T |
41866726 |
cgatgactacgttaggatttgaaga |
41866750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 232
Target Start/End: Complemental strand, 39786519 - 39786371
Alignment:
| Q |
84 |
aaagaacaagatcgttttcttcctatagcaaatgttggtagaataatgaaaaaagttattcctgcaaatggaaaaatctcaaaggatgcaaaagagacag |
183 |
Q |
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||||| ||||||||||| ||||| ||||| ||||||||||| || |||||| || | | ||| |||||| ||||||||| || ||||| ||||| || |
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| T |
39786519 |
aaagagcaagatcgtttgcttccaatagctaatgttggtaggatcatgaaacaaatcttgcctccaaatgcaaaaatctcgaaagatgctaaagaaacca |
39786420 |
T |
|
| Q |
184 |
ttcaagaatgtgtgtcggagttcataagttttgtcaccggggaagcatc |
232 |
Q |
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| T |
39786419 |
tgcaagagtgtgtctcagagtttgttagttttgtaactggtgaagcatc |
39786371 |
T |
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