View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11040_high_15 (Length: 424)

Name: NF11040_high_15
Description: NF11040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11040_high_15
NF11040_high_15
[»] chr3 (3 HSPs)
chr3 (98-180)||(28424311-28424393)
chr3 (381-417)||(28424593-28424629)
chr3 (235-301)||(28424448-28424513)
[»] chr4 (1 HSPs)
chr4 (5-97)||(27316336-27316428)
[»] chr8 (3 HSPs)
chr8 (99-180)||(23388234-23388315)
chr8 (235-301)||(23388367-23388433)
chr8 (371-417)||(23388503-23388549)
[»] chr7 (3 HSPs)
chr7 (381-417)||(42840961-42840997)
chr7 (97-176)||(42840750-42840830)
chr7 (104-144)||(40740666-40740706)
[»] scaffold0380 (1 HSPs)
scaffold0380 (105-144)||(6112-6151)
[»] chr5 (1 HSPs)
chr5 (97-144)||(10021004-10021051)


Alignment Details
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 98 - 180
Target Start/End: Original strand, 28424311 - 28424393
Alignment:
Q  98 ggtggcgtttagcctgggaaagcaaatttgtttcccatgatgggaaactttgctctttacctgcagctggcagtcatgacctg 180  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28424311 ggtggcgtttagcctgggaaagcaaagttgtttcccatgatgggaaactttgctttttacctgcagctggcagtcatgacctg 28424393  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 417
Target Start/End: Original strand, 28424593 - 28424629
Alignment:
Q  381 cttctctgcatctttcttattgttcctcttctctgct 417  Q
    |||||||||||||||||||||||||||||||||||||    
T  28424593 cttctctgcatctttcttattgttcctcttctctgct 28424629  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 301
Target Start/End: Original strand, 28424448 - 28424513
Alignment:
Q  235 gactttgcattctcaaagaacaaatgactcgtctgttgtcacaatcctaatccaattgcacactgtt 301  Q
    ||||||||||||||| |||||||||||||| | || ||||| ||||||| ||||||||||| |||||    
T  28424448 gactttgcattctcagagaacaaatgactcatttg-tgtcataatcctactccaattgcacgctgtt 28424513  T

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Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 27316336 - 27316428
Alignment:
Q  5 ttatgcagaggaccatcattcaatccttatctaagaatattagttacttatggtaagtaaatacatcatcaaagataaataggattaaacata 97  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||    
T  27316336 ttatgcagaggatcatcattcaatcctaatctaagaatattagttacttatagtatgtaaatacatgatcaaagataaataggattaaacata 27316428  T

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Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 23388234 - 23388315
Alignment:
Q  99 gtggcgtttagcctgggaaagcaaatttgtttcccatgatgggaaactttgctctttacctgcagctggcagtcatgacctg 180  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||| |||||||    
T  23388234 gtggcgtttagcctgggaaagcaaagttgtttcccatgatgggaaaatttgctttttacctgcagctggcagtcctgacctg 23388315  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 235 - 301
Target Start/End: Original strand, 23388367 - 23388433
Alignment:
Q  235 gactttgcattctcaaagaacaaatgactcgtctgttgtcacaatcctaatccaattgcacactgtt 301  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23388367 gactttgcattctaagagaacaaatgactcgtctgttgtcacaatcctaatccaattgcacactgtt 23388433  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 417
Target Start/End: Original strand, 23388503 - 23388549
Alignment:
Q  371 ctcagccctccttctctgcatctttcttattgttcctcttctctgct 417  Q
    |||||| || ||||||||||||||||||||||||||||||| |||||    
T  23388503 ctcagctcttcttctctgcatctttcttattgttcctcttccctgct 23388549  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 417
Target Start/End: Original strand, 42840961 - 42840997
Alignment:
Q  381 cttctctgcatctttcttattgttcctcttctctgct 417  Q
    |||||||||||||||||||||||||||||||||||||    
T  42840961 cttctctgcatctttcttattgttcctcttctctgct 42840997  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 176
Target Start/End: Original strand, 42840750 - 42840830
Alignment:
Q  97 aggtggcgtttagcctgggaaagcaaatttgtttcc-catgatgggaaactttgctctttacctgcagctggcagtcatga 176  Q
    |||||||||| || | ||||||| ||| ||||||   ||||||||||||||||||| ||||||| ||| ||||||||||||    
T  42840750 aggtggcgttaagtcggggaaagtaaagttgttttttcatgatgggaaactttgctttttacctccagttggcagtcatga 42840830  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 40740666 - 40740706
Alignment:
Q  104 gtttagcctgggaaagcaaatttgtttcccatgatgggaaa 144  Q
    ||||||| |||||||| ||| ||||||||||||||||||||    
T  40740666 gtttagcatgggaaaggaaaattgtttcccatgatgggaaa 40740706  T

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Target: scaffold0380 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 144
Target Start/End: Complemental strand, 6151 - 6112
Alignment:
Q  105 tttagcctgggaaagcaaatttgtttcccatgatgggaaa 144  Q
    |||||||||||||| |||| ||||||||||||||||||||    
T  6151 tttagcctgggaaaccaaagttgtttcccatgatgggaaa 6112  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 10021004 - 10021051
Alignment:
Q  97 aggtggcgtttagcctgggaaagcaaatttgtttcccatgatgggaaa 144  Q
    ||||| |||||||||||||||| |||| | ||||||||||||||||||    
T  10021004 aggtgccgtttagcctgggaaaacaaactagtttcccatgatgggaaa 10021051  T

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