View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11040_high_2 (Length: 763)
Name: NF11040_high_2
Description: NF11040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11040_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 234 - 742
Target Start/End: Original strand, 44841915 - 44842422
Alignment:
| Q |
234 |
ctcaaccatctcttgattcatcaaataactactgtgatgcatgcaatcaattgcannnnnnnnnnnnnnnnnnnnnnnnatttattactttatcagccat |
333 |
Q |
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| T |
44841915 |
ctcaaccatctcttgattcatcaaataactactgtgatgcatgcaatcaattgcatttctttttctttttttagtttttatttattactttatcagccat |
44842014 |
T |
|
| Q |
334 |
taggaaattgttggcccatgtgtgaaactcaaactctaacactgagatgtccattatctaaagtctagtaaacccaaaaactccttcggatttctaacct |
433 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44842015 |
taggaaattgttggcccatgtgtgaaactcaaactctaacactgagatgtccattatctaaagtctaataaacccaaaaactccttcggatttctaacct |
44842114 |
T |
|
| Q |
434 |
ttaaatgaataactgattttaactttctttacttttggaagaggagattatatactagtgtcaatctcctttctccctcttttttcaaaatcaaagaaaa |
533 |
Q |
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| T |
44842115 |
ttaaatgaataactgattttaactttctttacttttggaagaggagattatatactagtgtcaatctcctttctccctcttttttcaaaatcaaagaaaa |
44842214 |
T |
|
| Q |
534 |
cgagtataactgttttttcctctcaaagccaatacttcatcccttgcaacttctgcgatgtcgccaccaacgataagatcccccgtacatcactttcttt |
633 |
Q |
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| T |
44842215 |
cgagtataactgttttttcctctcaaagccaatagttcatcccttgcaacttctgtgatgtcgccaccaacgataag-tccccccgacatcactttcttt |
44842313 |
T |
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| Q |
634 |
ggtagcacttgacgaatgtctttgttcctatcaaagctatttttgatttcatagagtataatgcattctattttataagaataactcaaattaagagata |
733 |
Q |
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| T |
44842314 |
ggtagcacttgacgaatgtctttgttcctatcaaagctatttttgatttcatagggtataatgcattctattttataagaataactcaaattaagagata |
44842413 |
T |
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| Q |
734 |
tcattcaag |
742 |
Q |
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| T |
44842414 |
tcattcaag |
44842422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 11 - 170
Target Start/End: Original strand, 44841668 - 44841849
Alignment:
| Q |
11 |
cacagatatacatgaggtaagaaacattgacaatcatcgcaaataggaaaagaagagcaaagtacaacataatgacatt--------------------- |
89 |
Q |
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| T |
44841668 |
cacagatatacatgaggtaagaaacattgacaatcatcgcaaataggaaaagaagagcaaagtacaacataatgacattgacaggtacacacgcaggaaa |
44841767 |
T |
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| Q |
90 |
-catattcatctctcaagttaatgtcaacaaacatttccaaggaatcatgacaattactactttgatgatgaaactatttcc |
170 |
Q |
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| T |
44841768 |
tcatattcatctctcaagttaatgtcaacaaacatttccaaggaatcatgacaattactactttgatgatgaaactatttcc |
44841849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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