View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11040_high_21 (Length: 342)
Name: NF11040_high_21
Description: NF11040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11040_high_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 22 - 256
Target Start/End: Original strand, 8763010 - 8763244
Alignment:
| Q |
22 |
caagtttggtatattcatgatctccagaattttctttggaacagcctctgaattagggaaaatataaacacaagaaaaacacattgtaaaactgattaga |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8763010 |
caagtttggtatattcatgatctccagaattttctttggaacagcctctgaattagggaaaatataaacacaagaaaaacacattgtaaaactaattaga |
8763109 |
T |
|
| Q |
122 |
attaaaaagcctttcataagaaaaatatttttaaaagatgacttactttccaatccaatttggttaacagcaagcagaaacattttgtggagataaggtg |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8763110 |
tttaaaaagcctttcataagaaaaatatttttaaaagatgacttactttccaatccaatttggttaacagcaagcagaaacattttgtggagataaggtg |
8763209 |
T |
|
| Q |
222 |
tccaaacaagtttttgtttcttaacaacttgaata |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
8763210 |
tccaaacaagtttttgtttcttaacaacttgaata |
8763244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 8789489 - 8789577
Alignment:
| Q |
22 |
caagtttggtatattcatgatctccagaattttctttggaacagcctctgaattagggaaaatataaacacaagaaaaacacattgtaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8789489 |
caagtttggtatattcatgatctccagaattttctttggaacagcctctgaattagggaaaatataaacacaagaaaaacacattgtaa |
8789577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University