View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11040_high_23 (Length: 335)

Name: NF11040_high_23
Description: NF11040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11040_high_23
NF11040_high_23
[»] chr5 (4 HSPs)
chr5 (99-138)||(12063515-12063554)
chr5 (99-138)||(24162857-24162896)
chr5 (99-138)||(26120722-26120759)
chr5 (99-138)||(30742136-30742173)
[»] scaffold0578 (1 HSPs)
scaffold0578 (99-138)||(5958-5998)
[»] chr1 (2 HSPs)
chr1 (99-138)||(19475105-19475145)
chr1 (99-138)||(25449431-25449468)
[»] chr4 (4 HSPs)
chr4 (257-316)||(22317393-22317452)
chr4 (99-138)||(14116001-14116038)
chr4 (99-138)||(22089479-22089516)
chr4 (99-140)||(24955788-24955831)
[»] chr3 (9 HSPs)
chr3 (99-138)||(11222743-11222781)
chr3 (276-326)||(16201870-16201920)
chr3 (99-140)||(8712115-8712156)
chr3 (99-140)||(9064002-9064043)
chr3 (270-326)||(8711923-8711979)
chr3 (270-326)||(9063810-9063866)
chr3 (99-138)||(11073625-11073662)
chr3 (99-138)||(14006880-14006917)
chr3 (99-138)||(15902394-15902431)
[»] chr8 (4 HSPs)
chr8 (103-141)||(13224049-13224086)
chr8 (99-136)||(5825069-5825106)
chr8 (99-138)||(9767974-9768011)
chr8 (99-138)||(22672969-22673006)
[»] chr7 (6 HSPs)
chr7 (98-138)||(9802279-9802317)
chr7 (278-326)||(2277624-2277672)
chr7 (99-138)||(8182154-8182191)
chr7 (99-138)||(8932955-8932992)
chr7 (99-138)||(15705417-15705457)
chr7 (267-326)||(17914987-17915047)
[»] chr2 (2 HSPs)
chr2 (40-89)||(16801137-16801186)
chr2 (40-89)||(16840423-16840472)
[»] scaffold0525 (1 HSPs)
scaffold0525 (99-138)||(7055-7092)
[»] scaffold0032 (1 HSPs)
scaffold0032 (99-127)||(78551-78579)
[»] scaffold0004 (1 HSPs)
scaffold0004 (99-138)||(210604-210641)
[»] chr6 (2 HSPs)
chr6 (99-138)||(22801340-22801377)
chr6 (268-300)||(28952740-28952772)


Alignment Details
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 138
Target Start/End: Complemental strand, 12063554 - 12063515
Alignment:
Q  99 gaaggtgagaaaaacacacaagaagggggttgaattgtgt 138  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  12063554 gaaggtgagaaaaacacacaagaagggggttgaattgtgt 12063515  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 24162857 - 24162896
Alignment:
Q  99 gaaggtgagaaaaacacacaagaagggggttgaattgtgt 138  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  24162857 gaaggtgagaaaaacacacagcaagggggttgaattgtgt 24162896  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 138
Target Start/End: Complemental strand, 26120759 - 26120722
Alignment:
Q  99 gaaggtgagaaaaacacacaagaagggggttgaattgtgt 138  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  26120759 gaaggtgagaaaaacaca--agaagggggttgaattgtgt 26120722  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 30742136 - 30742173
Alignment:
Q  99 gaaggtgagaaaaacacacaagaagggggttgaattgtgt 138  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  30742136 gaaggtgagaaaaacac--aagaagggggttgaattgtgt 30742173  T

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Target: scaffold0578 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 138
Target Start/End: Complemental strand, 5998 - 5958
Alignment:
Q  99 gaaggtgagaaaaacacacaagaagg-gggttgaattgtgt 138  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  5998 gaaggtgagaaaaacacacaagaaggtgggttgaattgtgt 5958  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 138
Target Start/End: Complemental strand, 19475145 - 19475105
Alignment:
Q  99 gaaggtgagaaaaacacacaagaagg-gggttgaattgtgt 138  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  19475145 gaaggtgagaaaaacacacaagaaggtgggttgaattgtgt 19475105  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 138
Target Start/End: Complemental strand, 25449468 - 25449431
Alignment:
Q  99 gaaggtgagaaaaacacacaagaagggggttgaattgtgt 138  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  25449468 gaaggtgagaaaaacaca--agaagggggttgaattgtgt 25449431  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 316
Target Start/End: Complemental strand, 22317452 - 22317393
Alignment:
Q  257 agagaaggtatacacacatcaattttatactggttcctcctacattacaggagtaatcca 316  Q
    |||||| ||| ||||| | ||||||||||||||||||||||||| | |||||||| ||||    
T  22317452 agagaaagtagacacaaaacaattttatactggttcctcctacaatccaggagtagtcca 22317393  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 14116001 - 14116038
Alignment:
Q  99 gaaggtgagaaaaacacacaagaagggggttgaattgtgt 138  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  14116001 gaaggtgagaaaaacac--aagaagggggttgaattgtgt 14116038  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 22089479 - 22089516
Alignment:
Q  99 gaaggtgagaaaaacacacaagaagggggttgaattgtgt 138  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  22089479 gaaggtgagaaaaacac--aagaagggggttgaattgtgt 22089516  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 24955831 - 24955788
Alignment:
Q  99 gaaggtgagaaaaacacacaagaaggggg--ttgaattgtgtaa 140  Q
    |||||||||||||| ||||||||||||||  |||||||||||||    
T  24955831 gaaggtgagaaaaaaacacaagaaggggggtttgaattgtgtaa 24955788  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 11222743 - 11222781
Alignment:
Q  99 gaaggtgagaaaaacacacaagaagggggttgaattgtgt 138  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  11222743 gaaggtgagaaaaa-acacaagaagggggttgaattgtgt 11222781  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 326
Target Start/End: Complemental strand, 16201920 - 16201870
Alignment:
Q  276 caattttatactggttcctcctacattacaggagtaatccattccctttgc 326  Q
    ||||||||||||||||| |||||||  |||||||||||||| |||| ||||    
T  16201920 caattttatactggttcatcctacaacacaggagtaatccagtccccttgc 16201870  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 8712156 - 8712115
Alignment:
Q  99 gaaggtgagaaaaacacacaagaagggggttgaattgtgtaa 140  Q
    |||||||||||||| ||||||||||||||| |||||| ||||    
T  8712156 gaaggtgagaaaaatacacaagaagggggtcgaattgagtaa 8712115  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 9064043 - 9064002
Alignment:
Q  99 gaaggtgagaaaaacacacaagaagggggttgaattgtgtaa 140  Q
    |||||||||||||| ||||||||||||||| |||||| ||||    
T  9064043 gaaggtgagaaaaatacacaagaagggggtcgaattgagtaa 9064002  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 326
Target Start/End: Complemental strand, 8711979 - 8711923
Alignment:
Q  270 acacatcaattttatactggttcctcctacattacaggagtaatccattccctttgc 326  Q
    ||||| ||||||||||| ||||||||||||| | |||||||| |||| |||| ||||    
T  8711979 acacaacaattttataccggttcctcctacaatgcaggagtagtccagtccccttgc 8711923  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 326
Target Start/End: Complemental strand, 9063866 - 9063810
Alignment:
Q  270 acacatcaattttatactggttcctcctacattacaggagtaatccattccctttgc 326  Q
    ||||| ||||||||||| ||||||||||||| | |||||||| |||| |||| ||||    
T  9063866 acacaacaattttataccggttcctcctacaatgcaggagtagtccagtccccttgc 9063810  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 11073625 - 11073662
Alignment:
Q  99 gaaggtgagaaaaacacacaagaagggggttgaattgtgt 138  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  11073625 gaaggtgagaaaaacac--aagaagggggttgaattgtgt 11073662  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 14006880 - 14006917
Alignment:
Q  99 gaaggtgagaaaaacacacaagaagggggttgaattgtgt 138  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  14006880 gaaggtgagaaaaacac--aagaagggggttgaattgtgt 14006917  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 15902394 - 15902431
Alignment:
Q  99 gaaggtgagaaaaacacacaagaagggggttgaattgtgt 138  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  15902394 gaaggtgagaaaaacac--aagaagggggttgaattgtgt 15902431  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 141
Target Start/End: Complemental strand, 13224086 - 13224049
Alignment:
Q  103 gtgagaaaaacacacaagaagggggttgaattgtgtaaa 141  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  13224086 gtgagaaaaacacacaagaa-ggggttgaattgtgtaaa 13224049  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 136
Target Start/End: Original strand, 5825069 - 5825106
Alignment:
Q  99 gaaggtgagaaaaacacacaagaagggggttgaattgt 136  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  5825069 gaaggtgagaaaaatacaccagaagggggttgaattgt 5825106  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 138
Target Start/End: Complemental strand, 9768011 - 9767974
Alignment:
Q  99 gaaggtgagaaaaacacacaagaagggggttgaattgtgt 138  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  9768011 gaaggtgagaaaaacaca--agaagggggttgaattgtgt 9767974  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 22672969 - 22673006
Alignment:
Q  99 gaaggtgagaaaaacacacaagaagggggttgaattgtgt 138  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  22672969 gaaggtgagaaaaacac--aagaagggggttgaattgtgt 22673006  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 9802279 - 9802317
Alignment:
Q  98 agaaggtgagaaaaacacacaagaagggggttgaattgtgt 138  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  9802279 agaaggtgagaaaaacac--aagaagggggttgaattgtgt 9802317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 326
Target Start/End: Original strand, 2277624 - 2277672
Alignment:
Q  278 attttatactggttcctcctacattacaggagtaatccattccctttgc 326  Q
    ||||||||||||||||||||||| | ||| ||||||||| |||| ||||    
T  2277624 attttatactggttcctcctacaatccagaagtaatccagtccccttgc 2277672  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 8182154 - 8182191
Alignment:
Q  99 gaaggtgagaaaaacacacaagaagggggttgaattgtgt 138  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  8182154 gaaggtgagaaaaacac--aagaagggggttgaattgtgt 8182191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 8932955 - 8932992
Alignment:
Q  99 gaaggtgagaaaaacacacaagaagggggttgaattgtgt 138  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  8932955 gaaggtgagaaaaacac--aagaagggggttgaattgtgt 8932992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 138
Target Start/End: Complemental strand, 15705457 - 15705417
Alignment:
Q  99 gaaggtgagaaaaacacacaagaag-ggggttgaattgtgt 138  Q
    |||||||||||||| |||||||||| |||||||||||||||    
T  15705457 gaaggtgagaaaaaaacacaagaaggggggttgaattgtgt 15705417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 326
Target Start/End: Original strand, 17914987 - 17915047
Alignment:
Q  267 tacacacatcaattttatactgg-ttcctcctacattacaggagtaatccattccctttgc 326  Q
    |||||||| |||||||||||||| ||||||||||  | |||||||| ||||||||| ||||    
T  17914987 tacacacaacaattttatactggtttcctcctactatccaggagtagtccattccccttgc 17915047  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 16801137 - 16801186
Alignment:
Q  40 aagggtgatgaagatattggagccatgttctcaaggtttcaaacacttgt 89  Q
    |||| |||||||||||||| |  |||||| ||||||||||||||||||||    
T  16801137 aaggatgatgaagatattgaaatcatgttttcaaggtttcaaacacttgt 16801186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 16840423 - 16840472
Alignment:
Q  40 aagggtgatgaagatattggagccatgttctcaaggtttcaaacacttgt 89  Q
    |||| |||||||||||||| |  |||||| ||||||||||||||||||||    
T  16840423 aaggatgatgaagatattgaaatcatgttttcaaggtttcaaacacttgt 16840472  T

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Target: scaffold0525 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 7055 - 7092
Alignment:
Q  99 gaaggtgagaaaaacacacaagaagggggttgaattgtgt 138  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  7055 gaaggtgagaaaaacac--aagaagggggttgaattgtgt 7092  T

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Target: scaffold0032 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 127
Target Start/End: Original strand, 78551 - 78579
Alignment:
Q  99 gaaggtgagaaaaacacacaagaaggggg 127  Q
    |||||||||||||||||||||||||||||    
T  78551 gaaggtgagaaaaacacacaagaaggggg 78579  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 210604 - 210641
Alignment:
Q  99 gaaggtgagaaaaacacacaagaagggggttgaattgtgt 138  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  210604 gaaggtgagaaaaacac--aagaagggggttgaattgtgt 210641  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 22801340 - 22801377
Alignment:
Q  99 gaaggtgagaaaaacacacaagaagggggttgaattgtgt 138  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  22801340 gaaggtgagaaaaacac--aagaagggggttgaattgtgt 22801377  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 300
Target Start/End: Complemental strand, 28952772 - 28952740
Alignment:
Q  268 acacacatcaattttatactggttcctcctaca 300  Q
    ||||||||||||||||||| |||||||||||||    
T  28952772 acacacatcaattttataccggttcctcctaca 28952740  T

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