View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11040_high_26 (Length: 319)

Name: NF11040_high_26
Description: NF11040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11040_high_26
NF11040_high_26
[»] chr2 (11 HSPs)
chr2 (36-301)||(28412427-28412687)
chr2 (36-87)||(26769592-26769643)
chr2 (36-85)||(34993922-34993971)
chr2 (36-85)||(42511322-42511371)
chr2 (37-88)||(34784908-34784959)
chr2 (36-85)||(15909570-15909619)
chr2 (48-85)||(33153498-33153535)
chr2 (36-85)||(37419824-37419873)
chr2 (36-85)||(41433221-41433270)
chr2 (36-80)||(12224293-12224337)
chr2 (49-85)||(35455284-35455320)
[»] chr7 (8 HSPs)
chr7 (36-85)||(21864878-21864927)
chr7 (36-85)||(40131939-40131988)
chr7 (37-84)||(20545185-20545232)
chr7 (36-86)||(38804488-38804538)
chr7 (36-85)||(5409771-5409820)
chr7 (36-85)||(15680879-15680928)
chr7 (36-85)||(24105748-24105797)
chr7 (48-85)||(38134335-38134372)
[»] chr3 (8 HSPs)
chr3 (36-85)||(4466540-4466589)
chr3 (36-85)||(10455866-10455915)
chr3 (36-85)||(21211364-21211413)
chr3 (36-85)||(25074865-25074914)
chr3 (36-85)||(27277780-27277828)
chr3 (36-85)||(34185052-34185101)
chr3 (36-85)||(40052382-40052431)
chr3 (36-85)||(41961579-41961628)
[»] chr6 (9 HSPs)
chr6 (1-83)||(28862155-28862234)
chr6 (36-85)||(9027237-9027286)
chr6 (36-85)||(8365448-8365497)
chr6 (51-84)||(26553831-26553864)
chr6 (36-85)||(28715365-28715414)
chr6 (38-86)||(3209471-3209519)
chr6 (37-85)||(10339054-10339102)
chr6 (36-84)||(17841530-17841578)
chr6 (36-80)||(25096504-25096548)
[»] chr4 (8 HSPs)
chr4 (37-85)||(16184902-16184950)
chr4 (37-88)||(29205539-29205590)
chr4 (36-84)||(18575984-18576032)
chr4 (37-87)||(715543-715593)
chr4 (37-87)||(752869-752919)
chr4 (36-82)||(28084594-28084640)
chr4 (36-85)||(19482749-19482798)
chr4 (36-85)||(23292926-23292975)
[»] scaffold0450 (1 HSPs)
scaffold0450 (36-87)||(8562-8613)
[»] chr5 (6 HSPs)
chr5 (36-81)||(30183630-30183675)
chr5 (49-87)||(9929684-9929722)
chr5 (36-82)||(39268541-39268587)
chr5 (36-85)||(21576685-21576734)
chr5 (36-85)||(27932305-27932354)
chr5 (37-85)||(38464313-38464361)
[»] chr1 (9 HSPs)
chr1 (36-83)||(1486646-1486693)
chr1 (36-87)||(34712321-34712372)
chr1 (36-87)||(52903316-52903367)
chr1 (36-85)||(9828125-9828174)
chr1 (36-85)||(18190048-18190097)
chr1 (36-85)||(37598901-37598950)
chr1 (1-85)||(42325593-42325678)
chr1 (36-81)||(48040418-48040463)
chr1 (37-85)||(22794018-22794066)
[»] scaffold0793 (1 HSPs)
scaffold0793 (37-87)||(4819-4869)
[»] scaffold0019 (1 HSPs)
scaffold0019 (36-85)||(71806-71855)
[»] chr8 (6 HSPs)
chr8 (36-85)||(8343037-8343086)
chr8 (36-85)||(8343397-8343446)
chr8 (36-85)||(22652057-22652106)
chr8 (36-85)||(36450694-36450743)
chr8 (37-85)||(18407790-18407838)
chr8 (51-87)||(28819287-28819323)


Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 36 - 301
Target Start/End: Original strand, 28412427 - 28412687
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatagatacaaaataagccttcgnnnnnnnnnnnnnnnactctttcgtaggtttt 135  Q
    |||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||                |||||||||||||||||    
T  28412427 gtgtccgacactgggacacggctaattcgaggagcgtcagtgcttcatagatacaaaataagccttc-----tttttttttttactctttcgtaggtttt 28412521  T
Q  136 atcatttttcatgataaaaatatcttaaccttgttaggaatattcataaaaccagaactctgatagttccaataatccttaaacaataccgaaaagtccc 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28412522 atcatttttcatgataaaaatatcttaaccttgttaggaatattcataaaaccagaactctgatagttccaataatccttaaacaataccgaaaagtccc 28412621  T
Q  236 tccctctcgagcaatactttcttttttcctgtcttaaccctctgattcccgataaaaggggctaat 301  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28412622 tccctctcgaacaataatttcttttttcctgtcttaaccctctgattcccgataaaaggggctaat 28412687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 26769592 - 26769643
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatagat 87  Q
    |||||||||||||||||||| ||||| ||||||||||  |||||||||||||    
T  26769592 gtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttcatagat 26769643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 34993971 - 34993922
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    |||||||||||||||||||| ||||||| ||||||||  |||||||||||    
T  34993971 gtgtccgacactgggacacgcctaattcaaggagtgttcgtgcttcatag 34993922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 42511371 - 42511322
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    ||||||||||| |||||||||||||| ||||||||||  |||||||||||    
T  42511371 gtgtccgacacagggacacggctaatccgaggagtgtccgtgcttcatag 42511322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 34784959 - 34784908
Alignment:
Q  37 tgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatagata 88  Q
    |||| ||||| |||||||| || ||||||||||||| |||||||||||||||    
T  34784959 tgtctgacacggggacacgccttattcgaggagtgtctgtgcttcatagata 34784908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 15909619 - 15909570
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    ||||||||||| |||||||| ||||||||| ||||||  |||||||||||    
T  15909619 gtgtccgacacagggacacgcctaattcgaagagtgttcgtgcttcatag 15909570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 33153498 - 33153535
Alignment:
Q  48 gggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  33153498 gggacacgtctaattcaaggagtgtatgtgcttcatag 33153535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 37419824 - 37419873
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    ||||||||||| |||||||| ||||| ||||||||||  |||||||||||    
T  37419824 gtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 37419873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 41433221 - 41433270
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    ||||||||||| |  |||||  ||||||||||||||||||||||||||||    
T  41433221 gtgtccgacaccgaaacacgtttaattcgaggagtgtatgtgcttcatag 41433270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 12224293 - 12224337
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgctt 80  Q
    |||||||||||||||||||| ||||| | |||||||| |||||||    
T  12224293 gtgtccgacactgggacacgcctaatccaaggagtgtttgtgctt 12224337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 35455284 - 35455320
Alignment:
Q  49 ggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  35455284 ggacacggctaattcgaagagtgtatgttcttcatag 35455320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 21864878 - 21864927
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    ||||||||||| |||||||| |||||||||||||||| ||||||||||||    
T  21864878 gtgtccgacaccgggacacgtctaattcgaggagtgtctgtgcttcatag 21864927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 40131988 - 40131939
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    ||||||||||| |||||||| ||||| |||||||||| ||||||||||||    
T  40131988 gtgtccgacacagggacacgtctaatccgaggagtgtctgtgcttcatag 40131939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 84
Target Start/End: Complemental strand, 20545232 - 20545185
Alignment:
Q  37 tgtccgacactgggacacggctaattcgaggagtgtatgtgcttcata 84  Q
    |||||||||| ||||||||  ||||||||||||||| |||||||||||    
T  20545232 tgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 20545185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 38804538 - 38804488
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcataga 86  Q
    ||||||||| | |||||| | ||||| ||||||||||||||||||||||||    
T  38804538 gtgtccgacgccgggacatgcctaatccgaggagtgtatgtgcttcataga 38804488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 5409820 - 5409771
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    ||||||||||| |||||||| ||||| ||||||||||  |||||||||||    
T  5409820 gtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 5409771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 15680879 - 15680928
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    ||||||||||| | |||||| ||||||||||||||||  |||||||||||    
T  15680879 gtgtccgacaccgagacacgtctaattcgaggagtgtccgtgcttcatag 15680928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 24105748 - 24105797
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    ||||||||||| |||||||| ||||  |||||||||| ||||||||||||    
T  24105748 gtgtccgacaccgggacacgcctaacccgaggagtgtttgtgcttcatag 24105797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 38134372 - 38134335
Alignment:
Q  48 gggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  38134372 gggacacgcctaatccgaggagtgtatgtgcttcatag 38134335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 4466589 - 4466540
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    ||||||||||||||||||||||| |||||||||||||  |||||||||||    
T  4466589 gtgtccgacactgggacacggcttattcgaggagtgtccgtgcttcatag 4466540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 10455866 - 10455915
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    ||||||||||||||||||||  |||| | |||||||||||||||||||||    
T  10455866 gtgtccgacactgggacacgtttaatccaaggagtgtatgtgcttcatag 10455915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 21211364 - 21211413
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    |||||||||||||||||||  ||||| |||||||||| ||||||||||||    
T  21211364 gtgtccgacactgggacactcctaatccgaggagtgtttgtgcttcatag 21211413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 25074865 - 25074914
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    |||||||||||||||||||  ||||| ||||||||||  |||||||||||    
T  25074865 gtgtccgacactgggacacacctaatccgaggagtgttcgtgcttcatag 25074914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 27277828 - 27277780
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    ||||||||||| |||||| | ||||| |||||||||||||||||||||||    
T  27277828 gtgtccgacac-gggacatgtctaatccgaggagtgtatgtgcttcatag 27277780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 34185101 - 34185052
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    ||||||||||| |||||||| ||||| ||||||||||  |||||||||||    
T  34185101 gtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 34185052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 40052382 - 40052431
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    ||||||||||| |||||||| ||||| ||||||||||  |||||||||||    
T  40052382 gtgtccgacaccgggacacgcctaatccgaggagtgttcgtgcttcatag 40052431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 41961628 - 41961579
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    |||||||||||||||||||| ||||| |||| |||||  |||||||||||    
T  41961628 gtgtccgacactgggacacgcctaatccgagaagtgtccgtgcttcatag 41961579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 28862155 - 28862234
Alignment:
Q  1 tcagtgtaattatatgtgtcggtggtgccgtgttggtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcat 83  Q
    |||||||||| |||||||||||||    |||||||||||| |||||||||||||  ||||||||||| ||||  |||||||||    
T  28862155 tcagtgtaatcatatgtgtcggtgt---cgtgttggtgtctgacactgggacacacctaattcgaggcgtgtccgtgcttcat 28862234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 9027237 - 9027286
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    ||||||||||| |||||||||||||| | |||||||| ||||||||||||    
T  9027237 gtgtccgacaccgggacacggctaatccaaggagtgtttgtgcttcatag 9027286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 8365497 - 8365448
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    |||||||||||||||||||| ||||| |||||||| |  |||||||||||    
T  8365497 gtgtccgacactgggacacgcctaatccgaggagtctccgtgcttcatag 8365448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 26553831 - 26553864
Alignment:
Q  51 acacggctaattcgaggagtgtatgtgcttcata 84  Q
    ||||| ||||||||||||||||||||||||||||    
T  26553831 acacgcctaattcgaggagtgtatgtgcttcata 26553864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 28715365 - 28715414
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    |||| |||||| |||||||| |||||||||| |||||| |||||||||||    
T  28715365 gtgttcgacaccgggacacgcctaattcgagaagtgtacgtgcttcatag 28715414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 3209471 - 3209519
Alignment:
Q  38 gtccgacactgggacacggctaattcgaggagtgtatgtgcttcataga 86  Q
    |||||||||  ||||||| ||||| |||||||||| |||||||||||||    
T  3209471 gtccgacacccggacacgcctaatccgaggagtgtttgtgcttcataga 3209519  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 10339102 - 10339054
Alignment:
Q  37 tgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    ||||||||||||||||||| |||||  |||||||||  |||||||||||    
T  10339102 tgtccgacactgggacacgcctaatcggaggagtgtccgtgcttcatag 10339054  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 17841578 - 17841530
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcata 84  Q
    ||||||||||||| |||||| ||||| ||||||||||  ||||||||||    
T  17841578 gtgtccgacactgagacacgcctaatccgaggagtgtccgtgcttcata 17841530  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 25096504 - 25096548
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgctt 80  Q
    |||||| ||||||||||||| |||||||||||| ||| |||||||    
T  25096504 gtgtcccacactgggacacgtctaattcgaggaatgtttgtgctt 25096548  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 16184902 - 16184950
Alignment:
Q  37 tgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    ||||||||||||||||||| ||||| |||||||||| ||||||||||||    
T  16184902 tgtccgacactgggacacgcctaatccgaggagtgtttgtgcttcatag 16184950  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 29205539 - 29205590
Alignment:
Q  37 tgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatagata 88  Q
    ||||||||||||||||||| ||||| ||||||||||  ||||||||||||||    
T  29205539 tgtccgacactgggacacgcctaatccgaggagtgttcgtgcttcatagata 29205590  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 18576032 - 18575984
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcata 84  Q
    |||||||| || |||||||| ||||||||| ||||||||||||||||||    
T  18576032 gtgtccgaaaccgggacacgcctaattcgatgagtgtatgtgcttcata 18575984  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 715593 - 715543
Alignment:
Q  37 tgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatagat 87  Q
    |||||||||| |||||||| ||||| ||||||||||  |||||||||||||    
T  715593 tgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatagat 715543  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 752919 - 752869
Alignment:
Q  37 tgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatagat 87  Q
    |||||||||| |||||||| ||||| ||||||||||  |||||||||||||    
T  752919 tgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatagat 752869  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 28084594 - 28084640
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttca 82  Q
    |||||||||||||||||||| ||||| ||||||||||  ||||||||    
T  28084594 gtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttca 28084640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 19482749 - 19482798
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    |||||||||||||||||||  ||||| ||||||||||  |||||||||||    
T  19482749 gtgtccgacactgggacacacctaatccgaggagtgttcgtgcttcatag 19482798  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 23292975 - 23292926
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    ||||||||||| |||||||| ||||| ||||||||||  |||||||||||    
T  23292975 gtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 23292926  T

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Target: scaffold0450 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 8613 - 8562
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatagat 87  Q
    |||||||||||||| ||||| ||||||||||||||||  |||||||||||||    
T  8613 gtgtccgacactggtacacgcctaattcgaggagtgtccgtgcttcatagat 8562  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 30183630 - 30183675
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttc 81  Q
    |||||||||||||||||||| |||||||||| ||||| ||||||||    
T  30183630 gtgtccgacactgggacacgcctaattcgagaagtgtctgtgcttc 30183675  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 87
Target Start/End: Original strand, 9929684 - 9929722
Alignment:
Q  49 ggacacggctaattcgaggagtgtatgtgcttcatagat 87  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  9929684 ggacacgactaattcgaggagtgtctgtgcttcatagat 9929722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 39268587 - 39268541
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttca 82  Q
    |||||||||||||||||||| ||||| ||||||||||  ||||||||    
T  39268587 gtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttca 39268541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 21576734 - 21576685
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    ||||| |||||||||||||| ||||| ||||||||||  |||||||||||    
T  21576734 gtgtctgacactgggacacgcctaatccgaggagtgtccgtgcttcatag 21576685  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 27932305 - 27932354
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    ||||| |||||  ||||||| |||||||||||||||| ||||||||||||    
T  27932305 gtgtcggacaccaggacacgcctaattcgaggagtgtttgtgcttcatag 27932354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 38464361 - 38464313
Alignment:
Q  37 tgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    |||||||||| |||||||  ||||| |||||||||| ||||||||||||    
T  38464361 tgtccgacaccgggacacacctaatccgaggagtgtctgtgcttcatag 38464313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 1486693 - 1486646
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcat 83  Q
    ||||||||||| |||||||| ||||| |||||||||| ||||||||||    
T  1486693 gtgtccgacaccgggacacgcctaatccgaggagtgtctgtgcttcat 1486646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 34712372 - 34712321
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatagat 87  Q
    |||||| ||||||||||||| ||||||| ||||||||  |||||||||||||    
T  34712372 gtgtcctacactgggacacgtctaattcaaggagtgtccgtgcttcatagat 34712321  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 52903316 - 52903367
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatagat 87  Q
    ||||||||||| ||||||||||| |||||| ||||||  |||||||||||||    
T  52903316 gtgtccgacaccgggacacggcttattcgaagagtgtccgtgcttcatagat 52903367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 9828125 - 9828174
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    ||||||||||| |||||||| ||||| ||||||||||  |||||||||||    
T  9828125 gtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcatag 9828174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 18190097 - 18190048
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    ||||||||||| |||||||  ||||| ||||||||||||| |||||||||    
T  18190097 gtgtccgacaccgggacacacctaatccgaggagtgtatgcgcttcatag 18190048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 37598901 - 37598950
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    |||||||||| ||||||||| ||||| ||||||||||  |||||||||||    
T  37598901 gtgtccgacaatgggacacgcctaatccgaggagtgtccgtgcttcatag 37598950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 42325593 - 42325678
Alignment:
Q  1 tcagtgtaattatatgtgtcggtgg-tgccgtgttggtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    |||||||||  |||||||| ||||| || |||||  ||||| ||||  |||||||  |||||||||||||||| ||||||||||||    
T  42325593 tcagtgtaacaatatgtgttggtgggtgtcgtgtcagtgtcggacatcgggacacacctaattcgaggagtgtctgtgcttcatag 42325678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 48040463 - 48040418
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttc 81  Q
    |||||||||||||||||||| |||||| |||||||||  |||||||    
T  48040463 gtgtccgacactgggacacgcctaattggaggagtgtccgtgcttc 48040418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 22794066 - 22794018
Alignment:
Q  37 tgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    |||||||| | |||||||  ||||||||||||||||| |||||||||||    
T  22794066 tgtccgactccgggacacacctaattcgaggagtgtacgtgcttcatag 22794018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 4869 - 4819
Alignment:
Q  37 tgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatagat 87  Q
    |||||||||| |||||||| ||||| ||||||||||  |||||||||||||    
T  4869 tgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatagat 4819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 71806 - 71855
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    ||||||||||| |||||||| ||||| ||||||||||  |||||||||||    
T  71806 gtgtccgacaccgggacacgactaatccgaggagtgtcggtgcttcatag 71855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 8343037 - 8343086
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    ||||||||||| |||||||| ||||| ||| |||||| ||||||||||||    
T  8343037 gtgtccgacaccgggacacgcctaatccgaagagtgtctgtgcttcatag 8343086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 8343397 - 8343446
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    ||||||||||| |||||||| ||||| ||| |||||| ||||||||||||    
T  8343397 gtgtccgacaccgggacacgcctaatccgaagagtgtctgtgcttcatag 8343446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 22652057 - 22652106
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    ||||||||||| |||||||| ||||| ||||||||||  |||||||||||    
T  22652057 gtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcatag 22652106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 36450743 - 36450694
Alignment:
Q  36 gtgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    |||||||||||  ||||||| ||||| |||||||||| ||||||||||||    
T  36450743 gtgtccgacaccaggacacgcctaatccgaggagtgtctgtgcttcatag 36450694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 18407790 - 18407838
Alignment:
Q  37 tgtccgacactgggacacggctaattcgaggagtgtatgtgcttcatag 85  Q
    ||||||||||| ||||||| |||||| |||||||||  |||||||||||    
T  18407790 tgtccgacactaggacacgcctaattggaggagtgtccgtgcttcatag 18407838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 28819287 - 28819323
Alignment:
Q  51 acacggctaattcgaggagtgtatgtgcttcatagat 87  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  28819287 acacggctaatccgaggagtatatgtgcttcatagat 28819323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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