View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11040_high_27 (Length: 316)
Name: NF11040_high_27
Description: NF11040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11040_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 20 - 305
Target Start/End: Original strand, 10243417 - 10243702
Alignment:
| Q |
20 |
tgcaaagcagtccacataagaggtggcagtagagtgattggtgaaaattaggactgaatatcacatcatgagggctgcatccaggagattgaagtgcttt |
119 |
Q |
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| T |
10243417 |
tgcaaagcagtccacataagaggtggcagtagagtgattggtgaaaattaggactgaatatcacatcatgagggctgcatccaggagattgaagtgcttt |
10243516 |
T |
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| Q |
120 |
cattgcatgcttgtatcctggatttctgaatacattggctgtggctgttgctactgtcacaccccctttagcttgtgatagtttgctgctgtagatgaag |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10243517 |
cattgcatgcttgtatcctggatttctgaatacattggctgtggctgttgctactgtcacaccccctttagcttgtgatagtttgctgctgtagatgaag |
10243616 |
T |
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| Q |
220 |
cttaaggccttgccattttggataggaaactctctgcataatggaattttgttagcttctgtaaattctaactggcagaaattcat |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
10243617 |
cttaaggccttgccattttggataggaaactctctgcataatggaattttgttagcttttgtaaattctaactagcagaaattcat |
10243702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 23 - 292
Target Start/End: Original strand, 10273002 - 10273271
Alignment:
| Q |
23 |
aaagcagtccacataagaggtggcagtagagtgattggtgaaaattaggactgaatatcacatcatgagggctgcatccaggagattgaagtgctttcat |
122 |
Q |
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|||| |||||||||||||||||||||||||||| ||| ||||||| |||||| ||||| || |||| || ||| | ||| |||| | ||| | ||| |
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| T |
10273002 |
aaagtagtccacataagaggtggcagtagagtgtttgctgaaaatcaggactaaatattacttcatctggactgacactaggggattttaatgcctgcat |
10273101 |
T |
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| Q |
123 |
tgcatgcttgtatcctggatttctgaatacattggctgtggctgttgctactgtcacaccccctttagcttgtgatagtttgctgctgtagatgaagctt |
222 |
Q |
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| T |
10273102 |
ggtatgcctgtatcctggatgactgaacacatttgctgtggctgttcctgctgtcacacccccttttgtttgtgataatttgctgctgtagatgaagctt |
10273201 |
T |
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| Q |
223 |
aaggccttgccattttggataggaaactctctgcataatggaattttgttagcttctgtaaattctaact |
292 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |||| |||||| || ||| ||||||||| |
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| T |
10273202 |
aaggccttgccattttggataggaaactctctacataatgtaattgtgttagtttttgtccattctaact |
10273271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 28 - 259
Target Start/End: Original strand, 10265310 - 10265541
Alignment:
| Q |
28 |
agtccacataagaggtggcagtagagtgattggtgaaaattaggactgaatatcacatcatgagggctgcatccaggagattgaagtgctttcattgcat |
127 |
Q |
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||||||||||||||||| |||||||||||||||||||||| ||||| ||||| || |||| || ||| | | |||| || ||| ||||| |||| |
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| T |
10265310 |
agtccacataagaggtgacagtagagtgattggtgaaaatctggactaaatattacttcatctggactgacactatcggatttaaatgcattcatggcat |
10265409 |
T |
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| Q |
128 |
gcttgtatcctggatttctgaatacattggctgtggctgttgctactgtcacaccccctttagcttgtgatagtttgctgctgtagatgaagcttaaggc |
227 |
Q |
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| T |
10265410 |
gcttgaatcctggatttctgaacacatttgttgtggctgttcctgctgtcacacccccttttgtttgtgataatttgctgctgtagatgaagcttaaggc |
10265509 |
T |
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| Q |
228 |
cttgccattttggataggaaactctctgcata |
259 |
Q |
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||||||||||||||||||||||||||| |||| |
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| T |
10265510 |
cttgccattttggataggaaactctctacata |
10265541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 23 - 292
Target Start/End: Original strand, 10284244 - 10284513
Alignment:
| Q |
23 |
aaagcagtccacataagaggtggcagtagagtgattggtgaaaattaggactgaatatcacatcatgagggctgcatccaggagattgaagtgctttcat |
122 |
Q |
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|||| |||||||||||||||||||||||||||| ||| ||||||| |||||||||| | ||||||| || ||||| ||| ||||||||||| ||| |
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| T |
10284244 |
aaagtagtccacataagaggtggcagtagagtgtttgttgaaaatcaggactgaatgttacatcatctggactgcagtttggaatttgaagtgcttccat |
10284343 |
T |
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| Q |
123 |
tgcatgcttgtatcctggatttctgaatacattggctgtggctgttgctactgtcacaccccctttagcttgtgatagtttgctgctgtagatgaagctt |
222 |
Q |
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||| ||||||||||||||| |||||| ||| | |||||||||||||| ||| ||||| || | ||||||| ||||| |||||||| ||| || |
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| T |
10284344 |
catatgattgtatcctggatttgtgaatagatttgttgtggctgttgctaatgttacaccattttctgtttgtgatgacttgctactgtagataaagttt |
10284443 |
T |
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| Q |
223 |
aaggccttgccattttggataggaaactctctgcataatggaattttgttagcttctgtaaattctaact |
292 |
Q |
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||| |||| ||||||||||||||||||||||| || ||||||||| |||||| || ||| ||||||||| |
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| T |
10284444 |
aagccctttccattttggataggaaactctctacacaatggaattgtgttagtttttgtccattctaact |
10284513 |
T |
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