View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11040_high_36 (Length: 248)
Name: NF11040_high_36
Description: NF11040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11040_high_36 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 44947915 - 44947685
Alignment:
| Q |
1 |
ttggttttattttgtcttaacccttcaattttcaatggaaaaagagcattagtaattcaaaattcaacggaaagctaagtaaaagaatcgttgagtcgac |
100 |
Q |
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| T |
44947915 |
ttggctttattttgtcttaacccttcaattttcaatggaaaaaaggcattagtaattcaaaattcaacggaaagctaagtaaaagaatcgttgagttgac |
44947816 |
T |
|
| Q |
101 |
tttaaactcaagtacccaaaattgatttgacttatatgggatgacaattaagcccaaggccaattcattgttcagaaaaacctaaacagtttggtgacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44947815 |
tttaaactcaagtacccaaaattgatttgacttatatgggatgacaattaagcccaaggccaattcattgttcagaaaaaactaaacagtttggtgacaa |
44947716 |
T |
|
| Q |
201 |
actgtctcgacgaaccttcaacaaattatat |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
44947715 |
actgtctcgacgaaccttcaacaaattatat |
44947685 |
T |
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