View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11040_high_4 (Length: 678)

Name: NF11040_high_4
Description: NF11040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11040_high_4
NF11040_high_4
[»] chr1 (1 HSPs)
chr1 (18-668)||(41537507-41538149)


Alignment Details
Target: chr1 (Bit Score: 606; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 18 - 668
Target Start/End: Original strand, 41537507 - 41538149
Alignment:
Q  18 agattgacgggtttcacttgagaaatattccgctgaatctgagattgatttccatgggataggaggacgctattatgcagcgtgtactttcctggagtga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41537507 agattgacgggtttcacttgagaaatattccgctgaatctgagattgatttccatgggataggaggacgctattatgcagcgtgtactttcctggagtga 41537606  T
Q  118 gtctaccatcatgaccaagacttcttttcttaacggggcgactgctagtggacagggaaggtgctacataaacgtaaaatacaataagttagtaatttta 217  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41537607 gtctaccatcatgaccaagacttctcttcttaacggggcgactgctagtggacagggaaggtgctacataaacgtaaaatacaataagttagtaatttta 41537706  T
Q  218 aacagcactgattagaatttagaatggcaaaaacgatatagcaaaaagataaagcatgtaccattggtaatttctgcaaaaggtgttctattagaggtct 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||    
T  41537707 aacagcactgattagaatttagaatggcaaaaacgatatagcaaaaagataaagcatgtagcattggtaatgtctgcaaaaggtgttctatcagaggtct 41537806  T
Q  318 cattgacattgctttgagcttttgatgtatctctacaccttttgatagaatttcgagcagcagaggtttgaagcatcctttttattttgaaaggtgttct 417  Q
    ||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41537807 cattgacattgctttg--------atgtatctctacaccttttgatagaatttcgagcagcagaggtttgaagcatcctttttattttgaaaggtgttct 41537898  T
Q  418 ttgagctgtttaagacttgatttgttttgcatccaatgctagtttagcaatgcaatttatagtagccaacatgctagcagtgtagttggataagcattta 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41537899 ttgagctgtttaagacttgatttgttttgcatccaatgctagtttagcaatgcaatttatagtagccaacatgctagcagtgtagttggataagcattta 41537998  T
Q  518 agtctctaattcctataggctgtgtaggacctaatgctttgtaggcagacaactctaaccaactataatagattatcacatggctcaacacaaaagtaat 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41537999 agtctctaattcctataggctgtgtaggacctaatgctttgtaggcagacaactctaaccaactataatagattatcacatggctcaacacaaaagtaat 41538098  T
Q  618 taattaatatatctgacaactactcctctctttaactatcctcaacctttg 668  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41538099 taattaatatatctgacaactactcctctctttaactatcctcaacctttg 41538149  T

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