View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11040_high_44 (Length: 217)
Name: NF11040_high_44
Description: NF11040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11040_high_44 |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 65 - 206
Target Start/End: Complemental strand, 4039810 - 4039669
Alignment:
| Q |
65 |
tactaattgaatgaaccattttcaagtaagttaacaaaacaaataggaggaagatcaagtgaattccaaagaaaaagatcaccatcattacttgacaaac |
164 |
Q |
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| T |
4039810 |
tactaattgaatgaaccattttcaagtaagttaacaaaacaaataggaggaagatcaagtgaattccaaagaaaaagatcaccatcattacttgacaaac |
4039711 |
T |
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| Q |
165 |
aagaagattccatttcagttgaagtttgattattttcttcat |
206 |
Q |
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| T |
4039710 |
aagaagactccatttcagttgaagtttgattattttcttcat |
4039669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 4039854 - 4039817
Alignment:
| Q |
1 |
tgcttggcaattaagcatacattgatcacaaatgaaaa |
38 |
Q |
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| T |
4039854 |
tgcttggcaattaagcataaattgagcacaaatgaaaa |
4039817 |
T |
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