View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11040_high_6 (Length: 560)
Name: NF11040_high_6
Description: NF11040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11040_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 17 - 549
Target Start/End: Complemental strand, 42594935 - 42594406
Alignment:
| Q |
17 |
ataatcatatcacaaaggttgttcaattcagttatattccttgttcttcctgccttcaattcaaccataactgtcacaactaacaaacatgacacaagca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42594935 |
ataatcatatcacaaaggttgttcaattcagttatattccttgttcttcctgccttcaattcaaccataactgtcacaactaacaaacatgacacaagca |
42594836 |
T |
|
| Q |
117 |
agcatgtccttagaatcagatggtgccaacatagaacttggtgctagcttactcattactaccaccaccactactactactaccagcagtagcaagtaca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
42594835 |
agcatgtccttagaatcagatggtgccaacatagaacttggtgctagcttactcattactaccaccaccaccactactac---cagcagtagcaagtaca |
42594739 |
T |
|
| Q |
217 |
acaagaaatggcgtaaaagtttatacatagggttccttatctccttgaagaaacctacaacttctactgaaaactaccaagaatctcctccaccatcacc |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42594738 |
acaagaaatggcgtaaaagtttatacatagggttccttatctccttgaagaaacctacaacttctactgaaaactaccaagaatctcctccaccatcacc |
42594639 |
T |
|
| Q |
317 |
aatctcttcagtaccatacacttcattgcctcctactcctcctgctagaacctcctctgcaaaatcttccgttggtattgatataccctcacatactcaa |
416 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42594638 |
aatctcttcagtaccatacacttcattgcctcctactcctcctgctagaacctcctctgcaaaatcttctgttggtattgatataccctcacatactcaa |
42594539 |
T |
|
| Q |
417 |
gaggtggatattgctgaaattgtgaaaaagaaggacttgaaatctcttcttgagcttggtgggattggcatagtttgtgatgttcttcatggtcaaagtc |
516 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42594538 |
gagggggatattgctgaaattgtgaaaaagaaggacttgaaatctcttcttgagcttggtgggattggcatagtttgtgattttcttcatggtcaaagtc |
42594439 |
T |
|
| Q |
517 |
aacactcatcaaaggtatcctaatcctcttcat |
549 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
42594438 |
aacactcatcaaaggtatcctaatcctcttcat |
42594406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 423 - 527
Target Start/End: Original strand, 4089810 - 4089914
Alignment:
| Q |
423 |
gatattgctgaaattgtgaaaaagaaggacttgaaatctcttcttgagcttggtgggattggcatagtttgtgatgttcttcatggtcaaagtcaacact |
522 |
Q |
| |
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|||||||||| ||||||||| ||||||||||||| |||||||||||| |||||||| |||| | ||||||||||||||| | |||||||| ||| |||| |
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| T |
4089810 |
gatattgctggaattgtgaaggagaaggacttgaagtctcttcttgagtttggtggggttggtagagtttgtgatgttctccgtggtcaaattcatcact |
4089909 |
T |
|
| Q |
523 |
catca |
527 |
Q |
| |
|
||||| |
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|
| T |
4089910 |
catca |
4089914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 31812701 - 31812803
Alignment:
| Q |
18 |
taatcatatcacaaaggttgttcaattcagttatat-tccttgttcttcctgc--cttcaattcaaccataactgtcacaactaacaaacatgacacaag |
114 |
Q |
| |
|
||||||||||||||||||||||||| ||| | || |||||||||||||||| ||| ||||||||||||||||||||| ||||||||||| |||||| |
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| T |
31812701 |
taatcatatcacaaaggttgttcaactcaatcattcctccttgttcttcctgcagctttaattcaaccataactgtcacaggtaacaaacatgtcacaag |
31812800 |
T |
|
| Q |
115 |
caa |
117 |
Q |
| |
|
||| |
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|
| T |
31812801 |
caa |
31812803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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