View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11040_high_7 (Length: 526)
Name: NF11040_high_7
Description: NF11040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11040_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 12 - 513
Target Start/End: Complemental strand, 28412322 - 28411823
Alignment:
| Q |
12 |
gtgtccgtgtccgtattcgtgcttcatagttttgtatgcccacccaacccacgaattccatcaaatgcggaattaaaattttattccttaattaaaaaca |
111 |
Q |
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| T |
28412322 |
gtgtccgtgtccatattcgtgcttcatagttttgtatgcccacccatcccat--attccgccaaatgcggaattaaaattttattccttaattaaaaaca |
28412225 |
T |
|
| Q |
112 |
cggcaagtaagcattcttgaaattcgtgggttgaccctttgtagtatttagcaattctcttttatgatattttatgaaatctaatgatttagattagttg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28412224 |
cggcaagtaagcattcttgaaattcgtgggttgaccctttgtagtatttagcaattctcttttatgatattttatgaattctaatgatttagattagttg |
28412125 |
T |
|
| Q |
212 |
gtgaaatagtttgcaattttgttcagaattcagattatgggttgtgaaatgtgaatggaaaattgcttagttgaatctaatttgtttgttttcttgtaga |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28412124 |
gtgaaatagtttgcaattttgttcagaattcagattatgggttgtgaaatgtgaacggaaaattgcttagttgaatctaatttgtttgttttcttgtaga |
28412025 |
T |
|
| Q |
312 |
tctgtagaaggataggatctatgatttgtatttgtaacaaattggctactttgttgatgctgatttattaatcttattagtttatagtctcattctataa |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
28412024 |
tctgtagaaggataggatctatgatttgtatttgtaacaaattggctgctttgttgatgctgaattattaatcttattagtttatagtctcattctataa |
28411925 |
T |
|
| Q |
412 |
tcatgatcatttcttatccattttgtgtgacaatggttgggatttattcagacctgcgaattgtgatcatagaaacataatacagtattctgatcctctc |
511 |
Q |
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| T |
28411924 |
tcatgatcatttcttatccattttgtgtgacaatggttgggatttatttagacctgcgaattgtgatcatagaaacataatacagtattctgatcctctc |
28411825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 41 - 174
Target Start/End: Complemental strand, 40727625 - 40727492
Alignment:
| Q |
41 |
ttttgtatgcccacccaacccacgaattccatcaaatgcggaattaaaattttattcctt-aattaaaaacacggcaagtaagcattcttgaaattcgtg |
139 |
Q |
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||||||||||| ||||| |||| ||||||| ||||||||||| | | |||| || ||| ||||||||||||| ||||||||||||||| |||||||| |
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| T |
40727625 |
ttttgtatgcc-acccatcccatgaattccgccaaatgcggaaatgattttttttttctttaattaaaaacacgacaagtaagcattcttagaattcgtg |
40727527 |
T |
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| Q |
140 |
ggttgaccctttgtagtatttagcaattctctttt |
174 |
Q |
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| T |
40727526 |
ggttgatccttcgtagtatttagcaattctctttt |
40727492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 39
Target Start/End: Original strand, 20370556 - 20370585
Alignment:
| Q |
10 |
tagtgtccgtgtccgtattcgtgcttcata |
39 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
20370556 |
tagtgtccgtgtccgtattcgtgcttcata |
20370585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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