View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11040_high_9 (Length: 517)
Name: NF11040_high_9
Description: NF11040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11040_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 120 - 495
Target Start/End: Original strand, 24045173 - 24045559
Alignment:
| Q |
120 |
agtacctgtttggatacgcgttttctgacccccaaaagcgagtttagagattcaaaagcgatttcaccatttttt--aagatgtttgggtaactgcaaaa |
217 |
Q |
| |
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||||||||||||| || |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24045173 |
agtacctgtttgggtatgcgttttccgacccc-aaaagcgagtttagagattcaaaagcgatttcaccattttttttaagatgtttgggtaactgcaaaa |
24045271 |
T |
|
| Q |
218 |
gcgcttcaatcagtcctgattctagctccaaacccatgtttcctcaaagccataaattggagctcctg------ttaaaatcaattctgcaaaagcccca |
311 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
24045272 |
gcgcttcaatcagtcgtgattctagctccaaacccacgtttcctcaaagccataaattggagcttctgcggctgttaaaatcaattctgcaaaagcccca |
24045371 |
T |
|
| Q |
312 |
aatttgtttccagctttacccnnnnnnnctgctgtgttttcttccgcggtttaattttgtttcactattgcttgctacagttcagtttctgaaggttagg |
411 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24045372 |
aatttgtttccagctttacccttttttcctgctgtgttttcttccgcggtttaattttgtttcactattgcttgctacagttcagtttctgaaggttagg |
24045471 |
T |
|
| Q |
412 |
gaagcaagatcaatgttatttcagaaaagggccattcga----nnnnnnnnagtaagcccactcaattatctcacagatggtgttttc |
495 |
Q |
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|||||||||||||||||||||| ||||||||||||| || ||| ||||||||||||||||||||||||||||||||| |
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| T |
24045472 |
gaagcaagatcaatgttatttcggaaaagggccatttgatattttttttttagtgagcccactcaattatctcacagatggtgttttc |
24045559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 117 - 450
Target Start/End: Original strand, 36547533 - 36547871
Alignment:
| Q |
117 |
cttagtacctgtttggatacgcgttttctgacccccaaaagcgagtttagagattcaaaagcgatttcaccattttttaagatgtttgggtaactgcaaa |
216 |
Q |
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||||| |||||||||||||||||||||| | ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
36547533 |
cttagcacctgtttggatacgcgttttccaatccc-aaaagcgagtttagagattcaaaagccatttcaccattttttaagatgtttgggtaactgcaaa |
36547631 |
T |
|
| Q |
217 |
agcgcttcaatcagtcctgattctagctccaaacccatgtttcctcaaagccataaattggagct------cctgttaaaatcaattctgcaaaagcccc |
310 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
36547632 |
agcgcttcaatcagccgtgattctagctccaaacccacgtttcctcaaagccataaattggagcttctgcggctgctaaaatcaattctgcaaaagcccc |
36547731 |
T |
|
| Q |
311 |
aaatttgtttccagctttacccnnnnnnnctgctgtgttttcttccgcggtttaattttgtttcactattgcttgctacagttcagtttctgaaggttag |
410 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
36547732 |
aaatttgtttccagctttacccttcttttctgctgtgttttcttccgcgatttagttttgtttcactattgcttgctaccgttcatattctgaaggttag |
36547831 |
T |
|
| Q |
411 |
ggaagcaagatcaatgttatttcagaaaagggccattcga |
450 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |
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| T |
36547832 |
ggaagcaagatcaatgttgtttcagaaaagggccattcga |
36547871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 25924909 - 25925003
Alignment:
| Q |
18 |
tcttctactaactgtgctgatcagaatgctttcctattagctcttgatgttttttcgacctcgggatcgtggagtaattcttcacgtggaattct |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25924909 |
tcttctactaactgtgctgatcagaatggtttcctatcagctctttatgttttttcgacctcgggatcgtggagtaattcttcacgtggaattct |
25925003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 121 - 332
Target Start/End: Complemental strand, 2175800 - 2175584
Alignment:
| Q |
121 |
gtacctgtttggatacgcgttttctgacccccaaaagcgagtttagagattcaaaagcgatttcaccattttttaagatgtttgggtaactgcaaaagcg |
220 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||| | |||| |||| |||||| || |||||||||||||||||||||||||| |||||||||||||| |
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| T |
2175800 |
gtacctgtttggatacgcgttttcc-accctcaaacgtgagtctagatgttcaaacgccatttcaccattttttaagatgtttggataactgcaaaagcg |
2175702 |
T |
|
| Q |
221 |
cttcaatcagtcctgattctagctccaaacccatgtttcctcaaagccataaattggagct------cctgttaaaatcaattctgcaaaagccccaaat |
314 |
Q |
| |
|
|||| | || | ||| |||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2175701 |
cttctaccaaacgtgaatctagctccaaacccacgtttcctcaaagccacaaattggagcttctgcggctgttaaaatcaattctgcaaaagccccaaat |
2175602 |
T |
|
| Q |
315 |
ttgtttccagctttaccc |
332 |
Q |
| |
|
|| ||||||||||||||| |
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| T |
2175601 |
ttatttccagctttaccc |
2175584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 397 - 450
Target Start/End: Complemental strand, 2175503 - 2175450
Alignment:
| Q |
397 |
tttctgaaggttagggaagcaagatcaatgttatttcagaaaagggccattcga |
450 |
Q |
| |
|
||||||||||| ||||||||||||| ||| || |||||||||||| |||||||| |
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| T |
2175503 |
tttctgaaggtcagggaagcaagataaatattgtttcagaaaaggcccattcga |
2175450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 121 - 332
Target Start/End: Complemental strand, 47218279 - 47218063
Alignment:
| Q |
121 |
gtacctgtttggatacgcgttttctgacccccaaaagcgagtttagagattcaaaagcgatttcaccattttttaagatgtttgggtaactgcaaaagcg |
220 |
Q |
| |
|
||||||||||||||||||||||| | | || |||| | |||| |||| |||||| || |||||||||||||| |||||||||||||||||||||||| | |
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| T |
47218279 |
gtacctgtttggatacgcgtttt-tcagcctcaaacgtgagtctagatgttcaaatgccatttcaccatttttgaagatgtttgggtaactgcaaaagtg |
47218181 |
T |
|
| Q |
221 |
cttcaatcagtcctgattctagctccaaacccatgtttcctcaaagccataaattggagct------cctgttaaaatcaattctgcaaaagccccaaat |
314 |
Q |
| |
|
|||| | || | ||| |||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
47218180 |
cttctaccaaacgtgaatctagctccaaacccacgtttcctcaaagccacaaattggagcttctgcggctgttaaaatcaattctgcaaaagccccaaat |
47218081 |
T |
|
| Q |
315 |
ttgtttccagctttaccc |
332 |
Q |
| |
|
|| ||||||||||||||| |
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|
| T |
47218080 |
ttatttccagctttaccc |
47218063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 385 - 450
Target Start/End: Complemental strand, 47217994 - 47217929
Alignment:
| Q |
385 |
gctacagttcagtttctgaaggttagggaagcaagatcaatgttatttcagaaaagggccattcga |
450 |
Q |
| |
|
|||||| ||| |||||||||||| ||||||||||||||||| || |||||||||||| |||||||| |
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| T |
47217994 |
gctacaattcggtttctgaaggtcagggaagcaagatcaatattgtttcagaaaaggcccattcga |
47217929 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 286 - 330
Target Start/End: Complemental strand, 24771483 - 24771439
Alignment:
| Q |
286 |
ttaaaatcaattctgcaaaagccccaaatttgtttccagctttac |
330 |
Q |
| |
|
||||||||||||||||| || ||||||||| ||||||||||||| |
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|
| T |
24771483 |
ttaaaatcaattctgcataaaccccaaattaatttccagctttac |
24771439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 121 - 332
Target Start/End: Complemental strand, 20830833 - 20830619
Alignment:
| Q |
121 |
gtacctgtttggatacgcgttttctgacccccaaaagcgagtttagagattcaaaagcgatttcaccattttttaagatgtttgggtaactgcaaaagcg |
220 |
Q |
| |
|
|||||||||||||||||||||||| | || |||| |||||| |||| |||||| | |||||||||||||| ||| ||||||||||||||||||||| |
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|
| T |
20830833 |
gtacctgtttggatacgcgttttcc-agcctcaaacgcgagtctagatgttcaaacaccatttcaccatttttgaag--gtttgggtaactgcaaaagcg |
20830737 |
T |
|
| Q |
221 |
cttcaatcagtcctgattctagctccaaacccatgtttcctcaaagccataaattggagct------cctgttaaaatcaattctgcaaaagccccaaat |
314 |
Q |
| |
|
|||| | || | ||| |||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |
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|
| T |
20830736 |
cttctaccaaacgtgaatctagctccaaacccacctttcctcaaagccacaaattggagcttctgcggctgttaaaatcaattctgcaaaagcctcaaat |
20830637 |
T |
|
| Q |
315 |
ttgtttccagctttaccc |
332 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
20830636 |
ttatttccagctttaccc |
20830619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 385 - 450
Target Start/End: Complemental strand, 20830550 - 20830485
Alignment:
| Q |
385 |
gctacagttcagtttctgaaggttagggaagcaagatcaatgttatttcagaaaagggccattcga |
450 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||| || |||||||||||| |||||||| |
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|
| T |
20830550 |
gctacagttcggtttctgaaggtcagggaagcaagatcaatattgtttcagaaaaggtccattcga |
20830485 |
T |
|
Back To:
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