View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11040_low_11 (Length: 516)

Name: NF11040_low_11
Description: NF11040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11040_low_11
NF11040_low_11
[»] chr7 (1 HSPs)
chr7 (1-498)||(49008468-49008965)
[»] chr8 (8 HSPs)
chr8 (50-231)||(8945531-8945712)
chr8 (22-219)||(8958330-8958527)
chr8 (34-219)||(8974752-8974937)
chr8 (316-374)||(9947862-9947920)
chr8 (332-389)||(8958637-8958694)
chr8 (20-134)||(8963342-8963456)
chr8 (262-374)||(8945391-8945503)
chr8 (334-374)||(8975049-8975089)
[»] chr1 (2 HSPs)
chr1 (20-231)||(34962314-34962525)
chr1 (345-389)||(25927947-25927991)
[»] chr2 (1 HSPs)
chr2 (1-219)||(21686706-21686924)


Alignment Details
Target: chr7 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 49008468 - 49008965
Alignment:
Q  1 aatggttacagaccagcttcacctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49008468 aatggttacagaccagcttcacctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaag 49008567  T
Q  101 attatgtgaatcttctatgtgcattaaacttcactcagaagaatatcgcgcccatcacgagatcgtcttttaacaattgttctgacccttctttggacct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  49008568 attatgtgaatcttctatgtgcattaaacttcactcagaagaatatcgcagccatcacgagatcgtcttttaacaattgttctaacccttctttggacct 49008667  T
Q  201 taattacccttcttttatttcctttttcaataatgctagtgttaaatcaaaggtgattacacaagaatttcaaagaacagtaaccaatgttggagaggaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49008668 taattacccttcttttatttcctttttcaataatgctagtgttaaatcaaaggtgattacacaagaatttcaaagaacagtaaccaatgttggagaggaa 49008767  T
Q  301 ccaaccatctacgtagccaacattacacctattgaagggttccatgttagtgttatcccaaacaagttggtgtttaaggagaaaaatgaaaaggtggcat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49008768 ccaaccatctacgtagccaacattacacctattgaagggttccatgttagtgttatcccaaacaagttggtgtttaaggagaaaaatgaaaaggtggcat 49008867  T
Q  401 acaagttgaggatagaaggtcccaaaatggaggaaaataaagtagtttttgggtatctcacttggacagactcgaaacacaatgtcagaagtcccatt 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49008868 acaagttgaggatagaaggtcccaaaatggaggaaaataaagtagtttttgggtatctcacttggacagactcgaaacacaatgtcagaagtcccatt 49008965  T

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Target: chr8 (Bit Score: 54; Significance: 9e-22; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 50 - 231
Target Start/End: Complemental strand, 8945712 - 8945531
Alignment:
Q  50 atcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatgtgcattaaacttcactcagaagaatatcgc 149  Q
    ||||||||||||||||||| ||||| |||||||||||||  ||   |||||||||||| |||||||| |||||| | |||||||| || || || ||| |    
T  8945712 atcccaatagagcacttgaccctggtcttgtttatgatgttggtgtacaagattatgttaatcttctttgtgcacttaacttcacacaaaaaaacatcac 8945613  T
Q  150 gcccatcacgagatcgtcttttaacaattgttctgacccttctttggaccttaattacccttcttttatttcctttttcaat 231  Q
      | || || ||||| ||||| ||  |||||||| | ||||| ||||| ||||||||||||||||||||  | |||||||||    
T  8945612 tacgattacaagatcctctttcaatgattgttctaaaccttccttggatcttaattacccttcttttatagcttttttcaat 8945531  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 219
Target Start/End: Original strand, 8958330 - 8958527
Alignment:
Q  22 cctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatgtg 121  Q
    ||||| || |||||||| || ||| | ||||| |||||||||||||| ||||| ||| |||||||||  ||   |||||||||||| |||||||| ||||    
T  8958330 ccttttgcattgggagctggtcatgttaatccaaatagagcacttgaccctggtcttatttatgatgttggtgtacaagattatgttaatcttctttgtg 8958429  T
Q  122 cattaaacttcactcagaagaatatcgcgcccatcacgagatcgtcttttaacaattgttctgacccttctttggaccttaattacccttcttttatt 219  Q
    || | | || | | || || || ||| |  ||||||| ||||| ||||  ||  |||| ||||| ||||||||||| ||||| |||||||||||||||    
T  8958430 cacttagctactcacaaaaaaacatcactgccatcacaagatcttcttcgaatgattgctctgaaccttctttggatcttaactacccttcttttatt 8958527  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 219
Target Start/End: Original strand, 8974752 - 8974937
Alignment:
Q  34 ggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatgtgcattaaacttca 133  Q
    ||||| || |||||||| ||||| | ||||||| | |||||||||||||||||||  ||   |||||||||||| |||||||| |||||| | |||||||    
T  8974752 ggagctggtcatatcaaccccaacaaagcacttaaccctggacttgtttatgatgttggtgtacaagattatgtcaatcttctttgtgcactcaacttca 8974851  T
Q  134 ctcagaagaatatcgcgcccatcacgagatcgtcttttaacaattgttctgacccttctttggaccttaattacccttcttttatt 219  Q
    | || || || ||| |   ||| || ||||| |||  |||  |||||||| | ||||| ||||| || ||||||||||||||||||    
T  8974852 cacaaaaaaacatcactatcattacaagatcttctactaatgattgttctaaaccttcgttggatctcaattacccttcttttatt 8974937  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 316 - 374
Target Start/End: Complemental strand, 9947920 - 9947862
Alignment:
Q  316 gccaacattacacctattgaagggttccatgttagtgttatcccaaacaagttggtgtt 374  Q
    ||||||||||| |||||  ||||||| ||||| ||||||||||||||||||||||||||    
T  9947920 gccaacattactcctatcaaagggtttcatgtcagtgttatcccaaacaagttggtgtt 9947862  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 332 - 389
Target Start/End: Original strand, 8958637 - 8958694
Alignment:
Q  332 ttgaagggttccatgttagtgttatcccaaacaagttggtgtttaaggagaaaaatga 389  Q
    |||||||||||||||| ||||||||||||||||||||||| || || ||||| |||||    
T  8958637 ttgaagggttccatgtcagtgttatcccaaacaagttggtattcaatgagaagaatga 8958694  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 134
Target Start/End: Original strand, 8963342 - 8963456
Alignment:
Q  20 cacctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatg 119  Q
    ||||||| || |||||||| || |||||||| || |||| ||||||||| ||||| ||||||||||||   ||   |||||||||||| ||| |||| ||    
T  8963342 caccttttgcattgggagctggtcatatcaaccctaataaagcacttgaccctggtcttgtttatgatattggtgtacaagattatgttaattttctttg 8963441  T
Q  120 tgcattaaacttcac 134  Q
    |||| | ||||||||    
T  8963442 tgcacttaacttcac 8963456  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 262 - 374
Target Start/End: Complemental strand, 8945503 - 8945391
Alignment:
Q  262 caagaatttcaaagaacagtaaccaatgttggagaggaaccaaccatctacgtagccaacattacacctattgaagggttccatgttagtgttatcccaa 361  Q
    ||||||||||| |||||||| ||||||||||| |||| || | |||| || || || | |||||  ||| ||||||| | || |||||||| ||||||||    
T  8945503 caagaatttcacagaacagttaccaatgttggtgagggacaagccatttatgttgctagcattatgcctgttgaaggataccgtgttagtgctatcccaa 8945404  T
Q  362 acaagttggtgtt 374  Q
    | |||||| ||||    
T  8945403 ataagttgatgtt 8945391  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 374
Target Start/End: Original strand, 8975049 - 8975089
Alignment:
Q  334 gaagggttccatgttagtgttatcccaaacaagttggtgtt 374  Q
    ||||||||||||||||| ||||||||||| |||||||||||    
T  8975049 gaagggttccatgttagagttatcccaaataagttggtgtt 8975089  T

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Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 231
Target Start/End: Complemental strand, 34962525 - 34962314
Alignment:
Q  20 cacctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatg 119  Q
    ||||||| || |||||||| || ||| | ||||| |||||||||||||| ||||| |||||||||||||  ||   ||||||||||||||||||||| ||    
T  34962525 caccttttgcattgggagctggtcatgttaatcctaatagagcacttgaccctggtcttgtttatgatgttggtgtacaagattatgtgaatcttctttg 34962426  T
Q  120 tgcattaaacttcactcagaagaatatcgcgcccatcacgagatcgtcttttaacaattgttctgacccttctttggaccttaattacccttcttttatt 219  Q
    |||| | || | | | || || || ||| |  ||||||| ||||| ||||  ||  |||||||| | ||||| ||||| ||||| |||||||||||||||    
T  34962425 tgcacttaaatactcacaaaaaaacatcactaccatcacaagatcctcttccaatgattgttctaaaccttccttggatcttaactacccttcttttatt 34962326  T
Q  220 tcctttttcaat 231  Q
     | |||||||||    
T  34962325 gcttttttcaat 34962314  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 389
Target Start/End: Complemental strand, 25927991 - 25927947
Alignment:
Q  345 tgttagtgttatcccaaacaagttggtgtttaaggagaaaaatga 389  Q
    |||||||||||||||||||||||| |||||||| ||||| |||||    
T  25927991 tgttagtgttatcccaaacaagttagtgtttaatgagaagaatga 25927947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 21686924 - 21686706
Alignment:
Q  1 aatggttacagaccagcttcacctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaag 100  Q
    |||||| ||||| ||||  | ||||| || |||||||| || ||||| || || |||||||||||||||||||| ||||||||||||   ||   |||||    
T  21686924 aatggtaacagagcagcaactccttttgcattgggagctggtcatattaaccctaatagagcacttgatcctggtcttgtttatgatatcggtgtacaag 21686825  T
Q  101 attatgtgaatcttctatgtgcattaaacttcactcagaagaatatcgcgcccatcacgagatcgtcttttaacaattgttctgacccttctttggacct 200  Q
    ||||| | |||||||| |||||| | |||||||| || || || |||    |||| || ||||| ||||| ||  |||| ||| | ||||| || || ||    
T  21686824 attatattaatcttctttgtgcacttaacttcacacaaaaaaacatcagtgccattacaagatcttctttcaatgattgctctaaaccttccttagatct 21686725  T
Q  201 taattacccttcttttatt 219  Q
    ||| |||||||||||||||    
T  21686724 taactacccttcttttatt 21686706  T

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