View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11040_low_13 (Length: 491)

Name: NF11040_low_13
Description: NF11040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11040_low_13
NF11040_low_13
[»] chr3 (9 HSPs)
chr3 (177-476)||(42146799-42147097)
chr3 (179-476)||(51492208-51492504)
chr3 (211-329)||(44385128-44385245)
chr3 (178-278)||(42147497-42147596)
chr3 (178-277)||(51491709-51491807)
chr3 (177-226)||(46580363-46580412)
chr3 (178-279)||(53714487-53714588)
chr3 (289-344)||(33968290-33968346)
chr3 (178-218)||(50306531-50306571)
[»] chr1 (10 HSPs)
chr1 (178-476)||(15373957-15374256)
chr1 (171-476)||(46358375-46358664)
chr1 (178-336)||(4530800-4530957)
chr1 (177-278)||(15374646-15374746)
chr1 (31-72)||(46358665-46358706)
chr1 (186-278)||(46357885-46357976)
chr1 (177-279)||(45597623-45597725)
chr1 (177-227)||(51610220-51610270)
chr1 (178-218)||(3788435-3788475)
chr1 (177-221)||(4626345-4626389)
[»] chr7 (8 HSPs)
chr7 (178-476)||(9379545-9379843)
chr7 (177-329)||(37693458-37693609)
chr7 (177-312)||(36661684-36661819)
chr7 (177-232)||(9378728-9378783)
chr7 (186-344)||(34996885-34997045)
chr7 (288-350)||(23624384-23624447)
chr7 (244-303)||(30915799-30915858)
chr7 (244-292)||(30402788-30402836)
[»] scaffold0016 (2 HSPs)
scaffold0016 (192-476)||(67740-68024)
scaffold0016 (178-278)||(67247-67346)
[»] chr8 (3 HSPs)
chr8 (31-172)||(44458876-44459023)
chr8 (31-172)||(44466409-44466556)
chr8 (178-336)||(511334-511491)
[»] chr2 (3 HSPs)
chr2 (178-336)||(6198795-6198951)
chr2 (178-293)||(5504344-5504458)
chr2 (178-218)||(26021919-26021959)
[»] chr6 (1 HSPs)
chr6 (281-351)||(25371271-25371342)
[»] chr4 (7 HSPs)
chr4 (177-303)||(5825333-5825457)
chr4 (243-303)||(20350402-20350462)
chr4 (177-228)||(55879793-55879844)
chr4 (177-231)||(49708720-49708774)
chr4 (288-344)||(38321177-38321233)
chr4 (252-296)||(6680273-6680317)
chr4 (288-351)||(34155500-34155564)
[»] chr5 (1 HSPs)
chr5 (178-218)||(30002864-30002904)


Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 177 - 476
Target Start/End: Original strand, 42146799 - 42147097
Alignment:
Q  177 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctc 276  Q
    |||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  42146799 aggtggcatttagggtgggatggg-aaagattttcccaccatgggaaagttgatttctaatccttggatcaaatgaagagtatagttttatcatagtctc 42146897  T
Q  277 tcaccactagattttttcacactatctcccacacccttttctctcctccatccccactcacccaccacgagcaaaccaccaccaagtccatgtgtccaaa 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42146898 tcaccactagattttttcacactatctcccacacccttttctctcctccatccccactcacccaccacgagcaaaccaccaccaagtccatgtgtccaaa 42146997  T
Q  377 ttcccaactctttcaatctctcatcaacttcattttttatgagatcaagttatagagcttcaaaatacgggaattgaaacaattccatgatagttgtatt 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  42146998 ttcccaactctttcaatctctcatcaacttcattttttatgagatcaagttatggagcttcaaaatacgggaatcgaaacaattccatgatagttgtatt 42147097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 179 - 476
Target Start/End: Complemental strand, 51492504 - 51492208
Alignment:
Q  179 gtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctctc 278  Q
    ||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  51492504 gtggcatttagggtgggatggagaaagattttcccaccatgggaaagttgatttctaatccttggatcaaatgaagagtatagttttatcatagtctctc 51492405  T
Q  279 accactagattttttcacactatctcccacacccttttctctcctccatccccactcacccaccacgagcaaaccaccaccaagtccatgtgtccaaatt 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51492404 accactagattttttcacactatctcccacacccttttctctcctccatccccactcacccaccacgagcaaaccaccaccaagtccatgtgtccaaatt 51492305  T
Q  379 cccaactctttcaatctctcatcaacttcattttttatgagatcaagttatagagcttcaaaatacgggaattgaaacaattccatgatagttgtatt 476  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||| ||||||||||||||||    
T  51492304 cccaactctttcaatctctcatcaacttcattttttatgagat-aagttatggagcatcaaaatacgggaattgaaacaatgccatgatagttgtatt 51492208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 211 - 329
Target Start/End: Complemental strand, 44385245 - 44385128
Alignment:
Q  211 cccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctctcaccactagatt-ttttcacactatctcccaca 309  Q
    ||||| |||| ||||||||||| |||  |||  |||||||||||| ||||||||||| |||| |||||||||||||||| |||||||||||| |||||||    
T  44385245 cccacaatgggaaagttgatttataactcttagatcaaatgaagaccatagttttattatagactctcaccactagatttttttcacactatatcccaca 44385146  T
Q  310 cccttttctctcctccatcc 329  Q
    |||  |||||||||||||||    
T  44385145 ccc--ttctctcctccatcc 44385128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 178 - 278
Target Start/End: Complemental strand, 42147596 - 42147497
Alignment:
Q  178 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 277  Q
    ||||||||||||||||||| ||||||| |||||||||||||||  |||||||||| ||  | ||| || |||| |||| || | ||||||||||||||||    
T  42147596 ggtggcatttagggtgggaaggggaaagattttcccaccatgggcaagttgattt-tagccattggattaaataaagaacacacttttatcatagtctct 42147498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 178 - 277
Target Start/End: Original strand, 51491709 - 51491807
Alignment:
Q  178 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 277  Q
    ||||| ||||||||||||| ||||||| ||||| |||||||||| |||||||||| ||  | ||| || |||| |||| || | ||||||||||||||||    
T  51491709 ggtggtatttagggtgggaaggggaaagatttttccaccatggacaagttgattt-tagccattggattaaataaagaacacacttttatcatagtctct 51491807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 46580363 - 46580412
Alignment:
Q  177 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagt 226  Q
    |||||||||||||||||||  || |||| ||||||| |||||||||||||    
T  46580363 aggtggcatttagggtgggtaggagaaagattttcctaccatggaaaagt 46580412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 279
Target Start/End: Original strand, 53714487 - 53714588
Alignment:
Q  178 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 277  Q
    ||||||||||||||||||   |||||| | ||||||||||||| |||| |  ||| |||   ||| ||||||  |||| |||||| ||||||||||||||    
T  53714487 ggtggcatttagggtgggtgagggaaagaatttcccaccatgggaaagatactttttaacggttggatcaaagaaagaccatagtattatcatagtctct 53714586  T
Q  278 ca 279  Q
    ||    
T  53714587 ca 53714588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 289 - 344
Target Start/End: Original strand, 33968290 - 33968346
Alignment:
Q  289 tttttcacactatctcccac-acccttttctctcctccatccccactcacccaccac 344  Q
    |||||||||||||||| ||| | | || |||||| ||||||||||||||||||||||    
T  33968290 tttttcacactatctctcaccatcattctctctcttccatccccactcacccaccac 33968346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 50306571 - 50306531
Alignment:
Q  178 ggtggcatttagggtgggatggggaaatattttcccaccat 218  Q
    ||||||||||||||||||| ||||||| | |||||||||||    
T  50306571 ggtggcatttagggtgggaaggggaaagagtttcccaccat 50306531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 178 - 476
Target Start/End: Original strand, 15373957 - 15374256
Alignment:
Q  178 ggtggcatttagggtgggatggggaaatattttcccaccatgg-aaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctc 276  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15373957 ggtggcatttagggtgggatggggaaagattttcccaccatgggaaaagttgatttctaatccttggatcaaatgaagagcatagttttatcatagtctc 15374056  T
Q  277 tcaccactagattttttcacactatctcccacacccttttctctcctccatccccactcacccaccacgagcaaaccaccaccaagtccatgtgtccaaa 376  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15374057 tcaccactagattttttcacactatctcccacatccttttctctcctccatccccactcacccaccacgagcaaaccaccaccaagtccatgtgtccaaa 15374156  T
Q  377 ttcccaactctttcaatctctcatcaacttcattttttatgagatcaagttatagagcttcaaaatacgggaattgaaacaattccatgatagttgtatt 476  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  15374157 ttcccaactctttcaatctctcatcaacttcattttttatgagctcaagttatggagcttcaaaatacgggaatcgaaacaattccatgatagttgtatt 15374256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 171 - 476
Target Start/End: Complemental strand, 46358664 - 46358375
Alignment:
Q  171 ctacggaggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcat 270  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  46358664 ctacggaggtggcatttagggtgggatgggaaaagattttcccaccatgggaaagttgatttctaatcctttaatcaaatgaagagcatagttttatcat 46358565  T
Q  271 agtctctcaccactagattttttcacactatctcccacacccttttctctcctccatccccactcacccaccacgagcaaaccaccaccaagtccatgtg 370  Q
    ||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46358564 agtctctcaccactaaattttttcacactatctcccacacccttt--tctcctccatccccactcacccaccacgagcaaaccaccaccaagtccatgtg 46358467  T
Q  371 tccaaattcccaactctttcaatctctcatcaacttcattttttatgagatcaagttatagagcttcaaaatacgggaattgaaacaattccatgatagt 470  Q
    ||||||||||||||||||||||||||||              ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  46358466 tccaaattcccaactctttcaatctctc--------------ttatgagatcaagttatggagcttcaaaatacgggaattgaaacaattccatgatagt 46358381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 178 - 336
Target Start/End: Complemental strand, 4530957 - 4530800
Alignment:
Q  178 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 277  Q
    ||||| ||||||||||||   |||||| | || ||||| |||| ||||||||||| |||  |||  |||||||||||| |||| |||||| |||| ||||    
T  4530957 ggtggtatttagggtgggtgagggaaagaattccccacaatgggaaagttgatttataactcttagatcaaatgaagaccatatttttattatagactct 4530858  T
Q  278 caccactagatt-ttttcacactatctcccacacccttttctctcctccatccccactca 336  Q
    |||||||||||| |||||||||||| ||||||||||  |||||||||||||||| |||||    
T  4530857 caccactagatttttttcacactatatcccacaccc--ttctctcctccatcccaactca 4530800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 177 - 278
Target Start/End: Complemental strand, 15374746 - 15374646
Alignment:
Q  177 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctc 276  Q
    |||||||||||||||||||| ||||||| |||||||||||||||  |||||||||| ||  | ||| || |||| |||| || | |||||||||||||||    
T  15374746 aggtggcatttagggtgggaaggggaaagattttcccaccatgggcaagttgattt-tagccattggattaaataaagaacacacttttatcatagtctc 15374648  T
Q  277 tc 278  Q
    ||    
T  15374647 tc 15374646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 46358706 - 46358665
Alignment:
Q  31 ctgccatgtcttgcaaacgccatcataaagtggtgagtgaga 72  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  46358706 ctgccatgtcttgcaaacgccatcataaagtggtgagtgaga 46358665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 278
Target Start/End: Original strand, 46357885 - 46357976
Alignment:
Q  186 ttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctctc 278  Q
    ||||||||||| ||||||||||||| |||||||||  |||||||||| || || ||| || |||| |||| || | |||||||||||||||||    
T  46357885 ttagggtgggaaggggaaatatttttccaccatgggcaagttgattt-tagtcattggattaaataaagaacacacttttatcatagtctctc 46357976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 279
Target Start/End: Original strand, 45597623 - 45597725
Alignment:
Q  177 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctc 276  Q
    |||||||||||||||||||   |||||| | ||||||||||| | |||| |  ||| ||||  ||| ||||||  |||| |||||| |||||||||||||    
T  45597623 aggtggcatttagggtgggtgagggaaagaatttcccaccataggaaagatactttttaatggttggatcaaagaaagaccatagtattatcatagtctc 45597722  T
Q  277 tca 279  Q
    |||    
T  45597723 tca 45597725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 51610270 - 51610220
Alignment:
Q  177 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagtt 227  Q
    |||||||||||||||||||  || | |||||||||||||||||| ||||||    
T  51610270 aggtggcatttagggtgggtaggaggaatattttcccaccatgggaaagtt 51610220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 3788435 - 3788475
Alignment:
Q  178 ggtggcatttagggtgggatggggaaatattttcccaccat 218  Q
    ||||||||||||||||||| ||||||| | |||||||||||    
T  3788435 ggtggcatttagggtgggaaggggaaagagtttcccaccat 3788475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 4626389 - 4626345
Alignment:
Q  177 aggtggcatttagggtgggatggggaaatattttcccaccatgga 221  Q
    ||||||||||||||||||||  |||||| | ||||||||||||||    
T  4626389 aggtggcatttagggtgggagagggaaaaaatttcccaccatgga 4626345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 178 - 476
Target Start/End: Complemental strand, 9379843 - 9379545
Alignment:
Q  178 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 277  Q
    ||||||||||||||||||||||||||| ||||| |||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9379843 ggtggcatttagggtgggatggggaaagatttttccactatgggaaagttgatttctaatccttggatcaaatgaagagcatagttttatcatagtctct 9379744  T
Q  278 caccactagattttttcacactatctcccacacccttttctctcctccatccccactcacccaccacgagcaaaccaccaccaagtccatgtgtccaaat 377  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  9379743 caccactagattttttcacactatctcccacaccattttctctcctccatccccactcacccaccacgagcaaaccacaaccaagtccatgcgtccaaat 9379644  T
Q  378 tcccaactctttcaatctctcatcaacttcattttttatgagatcaagttatagagcttcaaaatacgggaattgaaacaattccatgatagttgtatt 476  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  9379643 tcccaactctttcaatctctcatcaacttcattttttatgagatcaagttatggagcttcaaaatacgggaagtgaaacaattccatgatagttgtatt 9379545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 177 - 329
Target Start/End: Complemental strand, 37693609 - 37693458
Alignment:
Q  177 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctc 276  Q
    |||||| ||||||||||||   |||||| | || ||||| |||| ||||||||||| |||  |||  |||||||||||| ||||||||||| |||| |||    
T  37693609 aggtggtatttagggtgggtgagggaaagaattccccacaatgggaaagttgatttataactcttagatcaaatgaagaccatagttttattatagactc 37693510  T
Q  277 tcaccactagatt-ttttcacactatctcccacacccttttctctcctccatcc 329  Q
    ||||||||||||| |||||||||||| ||||||||||  |||||||||||||||    
T  37693509 tcaccactagatttttttcacactatatcccacaccc--ttctctcctccatcc 37693458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 177 - 312
Target Start/End: Original strand, 36661684 - 36661819
Alignment:
Q  177 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctc 276  Q
    |||||||||||||||||||   |||||| | ||||||||||||| |||||   ||| | | | ||  ||||| ||||||||||| |||||| |||| |||    
T  36661684 aggtggcatttagggtgggtgagggaaagaatttcccaccatgggaaagtatttttgtgaccattagatcaattgaagagcataattttattatagactc 36661783  T
Q  277 tcaccactagattttttcacactatctcccacaccc 312  Q
    |||||| |||||||||||||||||||| ||||||||    
T  36661784 tcaccattagattttttcacactatcttccacaccc 36661819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 9378728 - 9378783
Alignment:
Q  177 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgattt 232  Q
    |||||||||||||||||||| ||||||| ||||| ||||||||| |||||||||||    
T  9378728 aggtggcatttagggtgggaaggggaaagatttttccaccatgggaaagttgattt 9378783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 344
Target Start/End: Original strand, 34996885 - 34997045
Alignment:
Q  186 ttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctctcaccacta 285  Q
    |||||||||||  | |||| | |||||||| |||| ||||| ||||| | ||| ||  || ||||||| | |||| |||||| |||| || ||| |||||    
T  34996885 ttagggtgggaatgagaaagagtttcccactatgggaaagt-gatttttgatcattagattaaatgaataacataattttataatagactttcaacacta 34996983  T
Q  286 gatttt---ttcacactatctccca-cacccttttctctcctccatccccactcacccaccac 344  Q
    ||||||   |||||||||||||||| |||| || |||||||||||||||| |||||| |||||    
T  34996984 gatttttttttcacactatctcccaccaccattctctctcctccatcccc-ctcacctaccac 34997045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 350
Target Start/End: Complemental strand, 23624447 - 23624384
Alignment:
Q  288 ttttttcacactatctcccac-acccttttctctcctccatccccactcacccaccacgagcaa 350  Q
    ||||||||||||||||| ||| ||| || |||||| |||||||||| ||||||||||| |||||    
T  23624447 ttttttcacactatctctcaccaccattctctctcttccatccccattcacccaccacaagcaa 23624384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 30915799 - 30915858
Alignment:
Q  244 atcaaatgaagagcatagttttatcatagtctctcaccactagattttttcacactatct 303  Q
    |||||||||||| |||| |||||||||| ||||||| ||||| |||||| | ||||||||    
T  30915799 atcaaatgaagaccatacttttatcatactctctcaacactatatttttccccactatct 30915858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 30402836 - 30402788
Alignment:
Q  244 atcaaatgaagagcatagttttatcatagtctctcaccactagattttt 292  Q
    |||||||||||| |||| |||||||||| ||||||| ||||| ||||||    
T  30402836 atcaaatgaagaccatacttttatcatactctctcaacactatattttt 30402788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 192 - 476
Target Start/End: Complemental strand, 68024 - 67740
Alignment:
Q  192 tgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctctcaccactagatttt 291  Q
    ||||||||||||| ||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  68024 tgggatggggaaagattttcccaccttgggaaagttgatttctaatccttggatcaaatgaagagcatagttttatcatagtctctcaccactagatttt 67925  T
Q  292 ttcacactatctcccacacccttttctctcctccatccccactcacccaccacgagcaaaccaccaccaagtccatgtgtccaaattcccaactctttca 391  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  67924 ttcacactatctcccacatccttttctctcctccatccccactcacccaccacgaacaaaccaccaccaagtccatgtgtccaaattcccaactctttca 67825  T
Q  392 atctctcatcaacttcattttttatgagatcaagttatagagcttcaaaatacgggaattgaaacaattccatgatagttgtatt 476  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||    
T  67824 atctctcatcaacttcattttttatgagatcaagttatggagcttcaaaatacgggaatcgaaactattccatgatagttgtatt 67740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 178 - 278
Target Start/End: Original strand, 67247 - 67346
Alignment:
Q  178 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 277  Q
    ||||||||||||||||||| ||||||| |||||||||||||||  |||||||||| ||  | ||| || |||| |||| || | ||||||||||||||||    
T  67247 ggtggcatttagggtgggaaggggaaagattttcccaccatgggcaagttgattt-tagccattggattaaataaagaacacacttttatcatagtctct 67345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 9e-62; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 31 - 172
Target Start/End: Complemental strand, 44459023 - 44458876
Alignment:
Q  31 ctgccatgtcttgcaaacgccatcataaagtggtgagtgagagagaatcgaatggggacaagcggctaggtattgtttttgtttgatgtttggcttt--- 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||       
T  44459023 ctgccatgtcttgcaaacgccatcataaagtggtgagtgagagagaatcgaatggggacaagcggctaggttttgtttttgtttgatgtttggctttcac 44458924  T
Q  128 ---cacagttacactatcaccactttagtagtacttgatcagttcgct 172  Q
       |||||||||||||||||||||||||||||||||||||||||||||    
T  44458923 attcacagttacactatcaccactttagtagtacttgatcagttcgct 44458876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 31 - 172
Target Start/End: Complemental strand, 44466556 - 44466409
Alignment:
Q  31 ctgccatgtcttgcaaacgccatcataaagtggtgagtgagagagaatcgaatggggacaagcggctaggtattgtttttgtttgatgtttggcttt--- 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||       
T  44466556 ctgccatgtcttgcaaacgccatcataaagtggtgagtgagagagaatcgaatggggacaagcggctaggttttgtttttgtttgatgtttggctttcac 44466457  T
Q  128 ---cacagttacactatcaccactttagtagtacttgatcagttcgct 172  Q
       |||||||||||||||||||||||||||||||||||||||||||||    
T  44466456 attcacagttacactatcaccactttagtagtacttgatcagttcgct 44466409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 178 - 336
Target Start/End: Complemental strand, 511491 - 511334
Alignment:
Q  178 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 277  Q
    ||||||||||||||||||    ||||| | ||||||| ||| | ||||||||||| ||| | ||| ||||||||||||||||| |||||| |||| ||||    
T  511491 ggtggcatttagggtgggtgaaggaaagaatttcccatcataggaaagttgatttataacctttggatcaaatgaagagcataattttattataggctct 511392  T
Q  278 caccactagatt-ttttcacactatctcccacacccttttctctcctccatccccactca 336  Q
    |||||||||||| |||||||||||||||||||||||  |||||||||||||||| |||||    
T  511391 caccactagatttttttcacactatctcccacaccc--ttctctcctccatcccaactca 511334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 6e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 178 - 336
Target Start/End: Complemental strand, 6198951 - 6198795
Alignment:
Q  178 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 277  Q
    ||||||||||||||||||   |||||| | ||||||| ||| | ||||||||||| ||| | ||| ||||||| ||||||||| |||||| |||| ||||    
T  6198951 ggtggcatttagggtgggtgagggaaagaatttcccatcataggaaagttgatttataacctttggatcaaataaagagcataattttattataggctct 6198852  T
Q  278 caccactagattttttcacactatctcccacacccttttctctcctccatccccactca 336  Q
    |||||||||||||||| ||||||||||||||||||  |||||||||||||||| |||||    
T  6198851 caccactagatttttttacactatctcccacaccc--ttctctcctccatcccaactca 6198795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 293
Target Start/End: Original strand, 5504344 - 5504458
Alignment:
Q  178 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 277  Q
    ||||||||||||||||||| ||||||| | |||||||| || |||||| |||||| | | | ||  |||||||||| | |||| |||||| ||||  | |    
T  5504344 ggtggcatttagggtgggaaggggaaagagtttcccactatagaaaag-tgatttttgaccattagatcaaatgaataacataattttataatagatttt 5504442  T
Q  278 caccactagatttttt 293  Q
    || |||||||||||||    
T  5504443 caacactagatttttt 5504458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 26021959 - 26021919
Alignment:
Q  178 ggtggcatttagggtgggatggggaaatattttcccaccat 218  Q
    ||||||||||||||||||| ||||||| | |||||||||||    
T  26021959 ggtggcatttagggtgggaaggggaaagagtttcccaccat 26021919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 281 - 351
Target Start/End: Original strand, 25371271 - 25371342
Alignment:
Q  281 cactagattttttcacactatctccca-cacccttttctctcctccatccccactcacccaccacgagcaaa 351  Q
    |||||||||||||||||||||||| || || | || |||||| |||||||| ||||||||||||| ||||||    
T  25371271 cactagattttttcacactatctctcaccatcattctctctcttccatccctactcacccaccacaagcaaa 25371342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 303
Target Start/End: Original strand, 5825333 - 5825457
Alignment:
Q  177 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctc 276  Q
    ||||||||||||||||||||  |||||| | ||||||||||| | ||||||  ||||||| | ||  ||||||||| || || | | ||||| || ||||    
T  5825333 aggtggcatttagggtgggaatgggaaagagtttcccaccatagcaaagtt-ttttctaaccattagatcaaatgaggaacacattattatcctactctc 5825431  T
Q  277 tcaccactagattttttcacactatct 303  Q
    ||| ||||||||||||| |||||||||    
T  5825432 tcaacactagatttttt-acactatct 5825457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 303
Target Start/End: Original strand, 20350402 - 20350462
Alignment:
Q  243 aatcaaatgaagagcatagttttatcatagtctctcaccactagattttttcacactatct 303  Q
    ||||||||||||| |||| |||||||||| ||||||| ||||| |||||| | ||||||||    
T  20350402 aatcaaatgaagatcatacttttatcatactctctcaacactatatttttccccactatct 20350462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 55879793 - 55879844
Alignment:
Q  177 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttg 228  Q
    |||||||||||||||||||   |||||||| ||||||||||||| |||||||    
T  55879793 aggtggcatttagggtgggtgagggaaataatttcccaccatgggaaagttg 55879844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 231
Target Start/End: Complemental strand, 49708774 - 49708720
Alignment:
Q  177 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatt 231  Q
    |||||||||||||||||||   |||||| | ||||||||||||||||||| ||||    
T  49708774 aggtggcatttagggtgggtgagggaaagaatttcccaccatggaaaagtagatt 49708720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 344
Target Start/End: Complemental strand, 38321233 - 38321177
Alignment:
Q  288 ttttttcacactatctccca-cacccttttctctcctccatccccactcacccaccac 344  Q
    |||||||||||||||||||| |||| || |||||||||||||||| |||||| |||||    
T  38321233 ttttttcacactatctcccaccaccattctctctcctccatcccc-ctcacctaccac 38321177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 296
Target Start/End: Complemental strand, 6680317 - 6680273
Alignment:
Q  252 aagagcatagttttatcatagtctctcaccactagattttttcac 296  Q
    |||| ||||||||||||||||  ||||| ||||||||||||||||    
T  6680317 aagaacatagttttatcatagattctcaacactagattttttcac 6680273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 351
Target Start/End: Complemental strand, 34155564 - 34155500
Alignment:
Q  288 ttttttcacactatctcccac-acccttttctctcctccatccccactcacccaccacgagcaaa 351  Q
    ||||||||||||||||| ||| | | || |||||| |||| ||||||||||||||||| ||||||    
T  34155564 ttttttcacactatctctcaccatcattctctctcttccacccccactcacccaccacaagcaaa 34155500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 30002864 - 30002904
Alignment:
Q  178 ggtggcatttagggtgggatggggaaatattttcccaccat 218  Q
    ||||||||||||||||||| ||||||| |||||||||||||    
T  30002864 ggtggcatttagggtgggaaggggaaagattttcccaccat 30002904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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