View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11040_low_17 (Length: 421)
Name: NF11040_low_17
Description: NF11040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11040_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 4039649 - 4039239
Alignment:
| Q |
1 |
cttcttcttctcaagtttatttttgttacatgcttctttgagattgttcaattgatcagaaattcctcttccattattgtttccagattcaagtttcaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4039649 |
cttcttcttctcaagtttatttttgttacatgcttctttgagattgttcaattgatcagaaattcctcttccattattgtttccagattcaagtttcaat |
4039550 |
T |
|
| Q |
101 |
ttcaagcattcaggtattccattgaatgcataaagagaagctgaaaattttctctcatatttcattctcttcataacagctctaatcattgaaggctcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4039549 |
ttcaagcattcaggtattccattgaatgcataaagagaagctgaaaattttctctcatatttcattctcttcataacagctctaatcattgaaggctcat |
4039450 |
T |
|
| Q |
201 |
cacaaaagctctcattctccaccatttgctcttccatttcctcagcaatctcaaaaggtgagtagtaactagttggagcaatatcgtcgagaaaccgaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4039449 |
cacaaaagctctcattctccaccatttgctcttccatttcctcagcaatctcaaaaggtgagtagtaactagttggagcaatatcgtcgagaaaccgaaa |
4039350 |
T |
|
| Q |
301 |
atcaggaacatcaacacttacgtcattattgacttcctcttcaccatcttctgaattgctatcaccacttgaagtttgtgtcacattgtttgatttagat |
400 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4039349 |
atcaggaacatcaacacttacatcattattgacttcctcttcaccatcttctgaattgctatcaccacttgaagtttctgtcacattgtttgatttagat |
4039250 |
T |
|
| Q |
401 |
tccatattcat |
411 |
Q |
| |
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||||||||||| |
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| T |
4039249 |
tccatattcat |
4039239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 86 - 203
Target Start/End: Complemental strand, 3161372 - 3161255
Alignment:
| Q |
86 |
gattcaagtttcaatttcaagcattcaggtattccattgaatgcataaagagaagctgaaaattttctctcatatttcattctcttcataacagctctaa |
185 |
Q |
| |
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|||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||| || ||| | |
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| T |
3161372 |
gattcaagtttcaacttcaagcactcaggtattccattgaaagcataaagagaagctgagaatttcctctcatatttcattctcttcatagcatttctta |
3161273 |
T |
|
| Q |
186 |
tcattgaaggctcatcac |
203 |
Q |
| |
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|||||||| |||||||| |
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| T |
3161272 |
gcattgaagactcatcac |
3161255 |
T |
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