View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11040_low_18 (Length: 380)

Name: NF11040_low_18
Description: NF11040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11040_low_18
NF11040_low_18
[»] chr6 (1 HSPs)
chr6 (15-364)||(34218187-34218540)
[»] chr8 (3 HSPs)
chr8 (41-154)||(2682406-2682519)
chr8 (156-301)||(2681719-2681862)
chr8 (319-349)||(2680495-2680525)
[»] chr4 (3 HSPs)
chr4 (41-154)||(5480792-5480905)
chr4 (156-301)||(5481449-5481592)
chr4 (319-349)||(5482786-5482816)
[»] chr2 (3 HSPs)
chr2 (41-154)||(45005832-45005945)
chr2 (156-301)||(45005145-45005288)
chr2 (319-349)||(45003921-45003951)
[»] chr1 (1 HSPs)
chr1 (41-144)||(27147330-27147440)


Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 15 - 364
Target Start/End: Original strand, 34218187 - 34218540
Alignment:
Q  15 gaagtgccttacaccaagnnnnnnntccaggtttgtatcgaagggcgatcctttatataataattataatgtctattataatagtgatctcttgcaaatt 114  Q
    ||||||||||||||||||        ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34218187 gaagtgccttacaccaagaaaaaaacccaggtttgtatcgaagggtgatcctttatataataattataatgtctattataatagtgatctcttgcaaatt 34218286  T
Q  115 ttcagggatcaagaatcaagggaaacaaatctcatttaaatctcatctgtctatgctctttgtgtttccaccttctcagcttattttannnnnnncagca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  34218287 ttcagggatcaagaatcaagggaaacaaatctcatttaaatctcatctgtctatgctctttgtgtttccaccttctcagcttattttatttttttcagca 34218386  T
Q  215 ----catcatggaagaagaacatgagcacattagtaaaagaattctctggcggccgaaaatggtatcaccaatggaggcagatgaactaaggcctgcacc 310  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34218387 catgcatcatggaagaagaacatgagcacattagtaaaagaattctctggcggccgaaaatggtatcaccaatggaggcagatgaactaaggcctgcacc 34218486  T
Q  311 gnnnnnnngcttctgctgggctggtgttacttgggtgctcggtggagtctttgc 364  Q
    |       ||||||||||||||||||||||||||||||||||||||||||||||    
T  34218487 gtttttttgcttctgctgggctggtgttacttgggtgctcggtggagtctttgc 34218540  T

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Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 41 - 154
Target Start/End: Complemental strand, 2682519 - 2682406
Alignment:
Q  41 ccaggtttgtatcgaagggcgatcctttatataataattataatgtctattataatagtgatctcttgcaaattttcagggatcaagaatcaagggaaac 140  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2682519 ccaggtttgtatcgaagggtgatcctttatataataattataatgtctattataatagtgatctcttgcaaattttcagggatcaagaatcaagggaaac 2682420  T
Q  141 aaatctcatttaaa 154  Q
    ||||||||||||||    
T  2682419 aaatctcatttaaa 2682406  T

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Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 156 - 301
Target Start/End: Complemental strand, 2681862 - 2681719
Alignment:
Q  156 ctcatctgtctatgctctttgtgtttccaccttctcagcttattttannnnnnncagcacatcatggaagaagaacatgagcacattagtaaaagaattc 255  Q
    ||||||||||||||||||  ||||||||||| |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  2681862 ctcatctgtctatgctct--gtgtttccaccatctcagcttattttatttttttcagcacatcatggaagaagaacatgagcacattagtaaaagaattc 2681765  T
Q  256 tctggcggccgaaaatggtatcaccaatggaggcagatgaactaag 301  Q
    |||||||||| |||||||||||||| |||||   ||||||||||||    
T  2681764 tctggcggccaaaaatggtatcaccgatggaactagatgaactaag 2681719  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 349
Target Start/End: Complemental strand, 2680525 - 2680495
Alignment:
Q  319 gcttctgctgggctggtgttacttgggtgct 349  Q
    |||||||||||||||||||||||||||||||    
T  2680525 gcttctgctgggctggtgttacttgggtgct 2680495  T

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Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 41 - 154
Target Start/End: Original strand, 5480792 - 5480905
Alignment:
Q  41 ccaggtttgtatcgaagggcgatcctttatataataattataatgtctattataatagtgatctcttgcaaattttcagggatcaagaatcaagggaaac 140  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5480792 ccaggtttgtatcgaagggtgatcctttatataataattataatgtctattataatagtgatctcttgcaaattttcagggatcaagaatcaagggaaac 5480891  T
Q  141 aaatctcatttaaa 154  Q
    ||||||||||||||    
T  5480892 aaatctcatttaaa 5480905  T

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Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 156 - 301
Target Start/End: Original strand, 5481449 - 5481592
Alignment:
Q  156 ctcatctgtctatgctctttgtgtttccaccttctcagcttattttannnnnnncagcacatcatggaagaagaacatgagcacattagtaaaagaattc 255  Q
    ||||||||||||||||||  ||||||||||| |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  5481449 ctcatctgtctatgctct--gtgtttccaccatctcagcttattttatttttttcagcacatcatggaagaagaacatgagcacattagtaaaagaattc 5481546  T
Q  256 tctggcggccgaaaatggtatcaccaatggaggcagatgaactaag 301  Q
    |||||||||| |||||||||||||| |||||   ||||||||||||    
T  5481547 tctggcggccaaaaatggtatcaccgatggatctagatgaactaag 5481592  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 349
Target Start/End: Original strand, 5482786 - 5482816
Alignment:
Q  319 gcttctgctgggctggtgttacttgggtgct 349  Q
    |||||||||||||||||||||||||||||||    
T  5482786 gcttctgctgggctggtgttacttgggtgct 5482816  T

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Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 41 - 154
Target Start/End: Complemental strand, 45005945 - 45005832
Alignment:
Q  41 ccaggtttgtatcgaagggcgatcctttatataataattataatgtctattataatagtgatctcttgcaaattttcagggatcaagaatcaagggaaac 140  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45005945 ccaggtttgtatcgaagggtgatcctttatataataattataatgtctattataatagtgatctcttgcaaattttcagggatcaagaatcaagggaaac 45005846  T
Q  141 aaatctcatttaaa 154  Q
    ||||||||||||||    
T  45005845 aaatctcatttaaa 45005832  T

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Target: chr2; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 156 - 301
Target Start/End: Complemental strand, 45005288 - 45005145
Alignment:
Q  156 ctcatctgtctatgctctttgtgtttccaccttctcagcttattttannnnnnncagcacatcatggaagaagaacatgagcacattagtaaaagaattc 255  Q
    ||||||||||||||||||  ||||||||||| |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  45005288 ctcatctgtctatgctct--gtgtttccaccatctcagcttattttatttttttcagcacatcatggaagaagaacatgagcacattagtaaaagaattc 45005191  T
Q  256 tctggcggccgaaaatggtatcaccaatggaggcagatgaactaag 301  Q
    |||||||||| |||||||||||||| ||||||  ||||||||||||    
T  45005190 tctggcggccaaaaatggtatcaccgatggagctagatgaactaag 45005145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 349
Target Start/End: Complemental strand, 45003951 - 45003921
Alignment:
Q  319 gcttctgctgggctggtgttacttgggtgct 349  Q
    |||||||||||||||||||||||||||||||    
T  45003951 gcttctgctgggctggtgttacttgggtgct 45003921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 41 - 144
Target Start/End: Original strand, 27147330 - 27147440
Alignment:
Q  41 ccaggtttgtatcgaagggcgatcctttatataataattataatgtctattat-------aatagtgatctcttgcaaattttcagggatcaagaatcaa 133  Q
    |||||||||||  |||||| |||| |||||||||||||||||||||||||| |       ||||||||||  ||||||||||||||||||||||||||||    
T  27147330 ccaggtttgtagtgaagggtgatcttttatataataattataatgtctatttttacattaaatagtgatcaattgcaaattttcagggatcaagaatcaa 27147429  T
Q  134 gggaaacaaat 144  Q
    |||||||||||    
T  27147430 gggaaacaaat 27147440  T

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