View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11040_low_20 (Length: 355)
Name: NF11040_low_20
Description: NF11040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11040_low_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 339
Target Start/End: Original strand, 3408162 - 3408495
Alignment:
| Q |
10 |
gagatgaacaaagaatggaagtatctcaatggttgatggctactttcttgtctgttttaaccaagaaaaggattaataacacgcactgttcaaagggccg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
3408162 |
gagatgaacaaagaatggaagtatctcaatggttgatggctactttcttgtctgttttaaccaagaaaaggattaataacacgcgctgttcaaagggacg |
3408261 |
T |
|
| Q |
110 |
tggaggannnnnnn---gacactatataatggtccaacaatggcgtcacatgtttcttcaaactacgaacattatgaaaaatattttggtacaaatttgt |
206 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3408262 |
tggaggattttttttttgacactatataatggtccaacaatggcgtcacatgtttcttcaaactaccaacattatgaaaaatattttggtacaaatttgt |
3408361 |
T |
|
| Q |
207 |
ataccacatgtctccacgaatctttatagcatagaattccttactcgtattagaacaaccctctctctcgagatgatgc---ttaaggttgattttctta |
303 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
3408362 |
ataccacgtgtctccacaaatctttatagcatagaattccttactcgtattagaataacc------ctcgagatgatgctaattaaggttgattttctta |
3408455 |
T |
|
| Q |
304 |
catca----atccactcacgatgacaattcacacagattt |
339 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3408456 |
catcaatccatccactcacgatgacaattcacacagattt |
3408495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University