View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11040_low_21 (Length: 354)
Name: NF11040_low_21
Description: NF11040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11040_low_21 |
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| [»] scaffold0268 (1 HSPs) |
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Alignment Details
Target: scaffold0268 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 340
Target Start/End: Original strand, 22259 - 22594
Alignment:
| Q |
19 |
ttaacccccttcactcttcttcattctccatcaacaaacaaaccctagaatctcttccttctcaaataatcacnnnnnnn--------------ctctca |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
22259 |
ttaacccccttcactcttcttcattctccatcaacaaacaaaccctaaaatctcttccttctcaaataatcactattttcataatcacttttttctctca |
22358 |
T |
|
| Q |
105 |
atttcaatttcccaaaaccaaacatgcctgcttttccagaagaaccacttctcgcaccaaacccagaccgattctgcatgttcccaatccaatacccaaa |
204 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22359 |
atttcaatttcctaaaaccaaacatgcctgcttttccagaagaaccacttctcgcaccaaacccagaccgattctgcatgttcccaatccaatacccaaa |
22458 |
T |
|
| Q |
205 |
aatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatctttcctccgatctcaagaactggaacaacctcactgacggt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
22459 |
aatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatctttcctccgatctcaagcactggaacaacctcacagacggc |
22558 |
T |
|
| Q |
305 |
gaacgccacttcgtctctcacgttctcgccttcttc |
340 |
Q |
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|||||||||||| ||||||||||||| ||||||||| |
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| T |
22559 |
gaacgccacttcatctctcacgttcttgccttcttc |
22594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 340
Target Start/End: Complemental strand, 10197829 - 10197494
Alignment:
| Q |
19 |
ttaacccccttcactcttcttcattctccatcaacaaacaaaccctagaatctcttccttctcaaataatcacnnnnnnn--------------ctctca |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
10197829 |
ttaacccccttcactcttcttcattctccatcaacaaacaaaccctaaaatctcttccttctcaaataatcactattttcataatcacttttttctctca |
10197730 |
T |
|
| Q |
105 |
atttcaatttcccaaaaccaaacatgcctgcttttccagaagaaccacttctcgcaccaaacccagaccgattctgcatgttcccaatccaatacccaaa |
204 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10197729 |
atttcaatttcctaaaaccaaacatgcctgcttttccagaagaaccacttctcgcaccaaacccagaccgattctgcatgttcccaatccaatacccaaa |
10197630 |
T |
|
| Q |
205 |
aatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatctttcctccgatctcaagaactggaacaacctcactgacggt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
10197629 |
aatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatctttcctccgatctcaagcactggaacaacctcacagacggc |
10197530 |
T |
|
| Q |
305 |
gaacgccacttcgtctctcacgttctcgccttcttc |
340 |
Q |
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|||||||||||| ||||||||||||| ||||||||| |
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| T |
10197529 |
gaacgccacttcatctctcacgttcttgccttcttc |
10197494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 102 - 340
Target Start/End: Original strand, 19456868 - 19457105
Alignment:
| Q |
102 |
tcaatttcaatttcccaaaaccaaacatgcctgcttttccagaagaaccacttctcgcaccaaacccagaccgattctgcatgttcccaatccaataccc |
201 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
19456868 |
tcaatttcaatttcccaaa-ccaaacatgcctgcttttccagaagaaccccttcttgccccaaacccagaccgattctgcatgttcccaatccaataccc |
19456966 |
T |
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| Q |
202 |
aaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatctttcctccgatctcaagaactggaacaacctcactgac |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||| | |||||||| ||| |
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| T |
19456967 |
aaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgctgaagaagtcgatctttcctccgatctcaagcactggcaaaacctcaccgac |
19457066 |
T |
|
| Q |
302 |
ggtgaacgccacttcgtctctcacgttctcgccttcttc |
340 |
Q |
| |
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|| |||||||||||| ||||||| || |||||||||||| |
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| T |
19457067 |
ggcgaacgccacttcatctctcatgtcctcgccttcttc |
19457105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 113 - 340
Target Start/End: Complemental strand, 25026214 - 25025986
Alignment:
| Q |
113 |
ttcccaaaaccaaaca-tgcctgcttttccagaagaaccacttctcgcaccaaacccagaccgattctgcatgttcccaatccaatacccaaaaatctgg |
211 |
Q |
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|||||||||||||||| ||||| |||| ||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25026214 |
ttcccaaaaccaaacaatgccttctttcccagaagaacctcttctcgctccaaacccagaccgattctgtatgttcccaatccaatacccaaaaatctgg |
25026115 |
T |
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| Q |
212 |
gaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatctttcctccgatctcaagaactggaacaacctcactgacggtgaacgcc |
311 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| | |||||||||||||||| ||||| ||||||| |
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| T |
25026114 |
gaaatgtacaaaaaagccgaagcctctttctggaccgccgaagaagtcgatctttcctccgatcttcaacactggaacaacctcaccgacggcgaacgcc |
25026015 |
T |
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| Q |
312 |
acttcgtctctcacgttctcgccttcttc |
340 |
Q |
| |
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||||| |||||||| | |||||||||||| |
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| T |
25026014 |
acttcatctctcacatcctcgccttcttc |
25025986 |
T |
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