View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11040_low_22 (Length: 347)
Name: NF11040_low_22
Description: NF11040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11040_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 282
Target Start/End: Complemental strand, 19964099 - 19963968
Alignment:
| Q |
150 |
ataacatggcattaagaatcgtagactcatccatgctcaactaccatatctacatcccaactaaatttatcaatgcagccagaaaaaatatggaaaattt |
249 |
Q |
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| T |
19964099 |
ataacatggcattaacaatcatgtactcaaccatgctcaatcaccctatctatagctcagctcaatctatcaatgcaaccagaaaaaa-atgaaaaattt |
19964001 |
T |
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| Q |
250 |
ataaacttacccggccaatccacaaataaaagg |
282 |
Q |
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| T |
19964000 |
ataaacttacccggcgagtccacaaataaaagg |
19963968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 90 - 147
Target Start/End: Complemental strand, 19964447 - 19964390
Alignment:
| Q |
90 |
cacttgggtatgaatttgcaatactgatacattcaaggactacaataagaacactcat |
147 |
Q |
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| T |
19964447 |
cacttgggtatgaatttgcaatattgatacattcaatgactataataagaacactcat |
19964390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 86 - 148
Target Start/End: Original strand, 19909623 - 19909687
Alignment:
| Q |
86 |
gagacacttgggtatgaatttgcaatactgatacattcaaggac--tacaataagaacactcata |
148 |
Q |
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| T |
19909623 |
gagacacttgggtatgaatttgcaataccgatacattcaaggactatataataagaacactcata |
19909687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 281
Target Start/End: Original strand, 1661204 - 1661313
Alignment:
| Q |
171 |
tagactcatccatgctcaactaccatatctacatcccaactaaatttatcaatgcagccagaaaaaatatggaaaatttataaacttacccggccaatcc |
270 |
Q |
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| T |
1661204 |
tagactcaaccatgctcaaccaccctatctacagctcagctcaatctatcaatgtagtccgaaaaaa-atggaaaatttaaaaacttactcgaccagtcc |
1661302 |
T |
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| Q |
271 |
acaaataaaag |
281 |
Q |
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| T |
1661303 |
acaaataaaag |
1661313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 243 - 328
Target Start/End: Original strand, 19910065 - 19910152
Alignment:
| Q |
243 |
aaaatttataaacttacccggccaatccacaaataaaagg--nnnnnnnncctttaaataaggtctttattttgccaaggaacccttc |
328 |
Q |
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| T |
19910065 |
aaaatttataaacttacccggccagtccacaaataaaaggacaaaaaaaacctttaaataaggcctttattttgccaagaaatccttc |
19910152 |
T |
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