View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11040_low_24 (Length: 335)
Name: NF11040_low_24
Description: NF11040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11040_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 2 - 323
Target Start/End: Complemental strand, 5015720 - 5015398
Alignment:
| Q |
2 |
catagaatcaagtttatataaaatgagccacccatgtatggcgagcaacaccgtgtgaaaggctttgatatttctaaaccccattcctcatatactttaa |
101 |
Q |
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| T |
5015720 |
catagaatcaagtttatataaaatgagccacccaagtatggcgagcaacaccgtgtgaaagactttgatatttctaaacctcattcctcatatacgttaa |
5015621 |
T |
|
| Q |
102 |
ggtttacaacatttgtttcagttgagctagcgta-ttttattgtaactataaccacatcaaaattgctttatcattgctacaatatcatcaaataatcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5015620 |
ggtttacaacatttgtttcagttgagctagcgtaattttattgtaactataaccacatcaaaattgctttatcattgcttcaatatcatcaaataatcat |
5015521 |
T |
|
| Q |
201 |
atctggataagaggaaacgatccatgatatgtgtttgtaagaatggactacgcaagagatttaatgagcacctcgcgacctgctgaagatataagaattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5015520 |
atctggataagaggaaacgatccatgatatgtgtttgtaagaatggactacgcaagagatttaatgagcacctcgcgacctgctgaagatataagaattt |
5015421 |
T |
|
| Q |
301 |
atcctgccaacctttcttcttct |
323 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
5015420 |
atcctgccaacctttcttcttct |
5015398 |
T |
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