View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11040_low_26 (Length: 335)
Name: NF11040_low_26
Description: NF11040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11040_low_26 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 29932845 - 29933166
Alignment:
| Q |
1 |
ttccatggccactcagttccatcctcccttttaaccttgggcctagtgattccccagtaactcgaaacgacggtgttgctgtcattactgttcttattct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29932845 |
ttccatggccactcagttccatcctcccttttaaccttgggcctagtgattccccagtaactcgaaacgacggtgttgctgtcattactgttcttattct |
29932944 |
T |
|
| Q |
101 |
cctctgaatgctgatactttttctctggcagagttgacatcttctgccagtagaagcttccacgagtgccaccgccattctggtgtctcggctgaactat |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29932945 |
cctctgaatgctgatcctttttctctggcagagttgacatcttctgccagtagaagcttccacgagtgccaccgccattctggtgtctcggctgaactat |
29933044 |
T |
|
| Q |
201 |
caccgcagttgagaagctgcagtgatagttgcgactactgtggaacagagctcgtgccgttgaccttagtaaagagtttttcatgtagaatgtttttgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29933045 |
caccgcagttgagaagctgcagtgatagttgcgactactgtggaacagagctcgtgccgttgaccttagtaaagagtttttcatgtagaatgtttttgaa |
29933144 |
T |
|
| Q |
301 |
tgagttcttggataaaaatagt |
322 |
Q |
| |
|
||||||||||||| |||||||| |
|
|
| T |
29933145 |
tgagttcttggatgaaaatagt |
29933166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 29935546 - 29935841
Alignment:
| Q |
1 |
ttccatggccactcagttccatcctcccttttaaccttgggcctagtgattccccagtaactcgaaacgacggtgttgctgtcattactgttcttattct |
100 |
Q |
| |
|
||||||||||||||||||||||| ||| | |||||| |||||| |||| |||||||||||||||||||||| |||| || | || || ||| |
|
|
| T |
29935546 |
ttccatggccactcagttccatcttccttaagaaccttaggcctactgataccccagtaactcgaaacgacggcgttgtggttggcatcttttttgctct |
29935645 |
T |
|
| Q |
101 |
cctctgaatgctgatactttttctctggcagagttgacatcttctgccagtagaagcttccacgagtgccaccgccattctggt---gtctcggctgaac |
197 |
Q |
| |
|
|||||| ||||||| |||||||||||||| |||||||||| |||||||||| ||| |||||| || || ||||||| ||||| ||||||||||||| |
|
|
| T |
29935646 |
cctctgtctgctgatcctttttctctggcaaagttgacatcctctgccagtacaagtttccacaagcaccgccgccatgctggtggtgtctcggctgaac |
29935745 |
T |
|
| Q |
198 |
tatcaccgcagttgagaagctgcagtgatagttgcgactactgtggaacagagctcgtgccgttgaccttagtaaagagtttttcatgtagaatgt |
293 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||| | || | || |||||| ||||||||| |||||||||| |||| |||| |||||| |||||| |
|
|
| T |
29935746 |
tatcaccgcagttgagaagctgcggtggtagttcccaccattgcggaacaaagctcgtgcagttgaccttaataaaatgtttctcatgttgaatgt |
29935841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University