View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11040_low_30 (Length: 298)
Name: NF11040_low_30
Description: NF11040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11040_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 11 - 280
Target Start/End: Complemental strand, 13298069 - 13297800
Alignment:
| Q |
11 |
cagagattgtagggaactgatgatgaggtggaaatggttccaaaattccttggtaagagggtggtgagataatgtttgtgtccataggttcagcaatgtt |
110 |
Q |
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| T |
13298069 |
cagagattgtagggaactgatgatgaggtggaaatggttccaaaattccttggtaagagggtggtgatataatatttgtgtccataggttcagcaatgtt |
13297970 |
T |
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| Q |
111 |
ggaaatttggcttgtgcttcctataagttgattattattattatcatcatttatttgaatatcagaaccttgttcttgagattgagagttctcagcttgc |
210 |
Q |
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| T |
13297969 |
ggaaatttggcttgtgcttcctataagttgattattattattatcatcatttatttgaatatcagaaccttgttcttgagattgagagttctcagcttgc |
13297870 |
T |
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| Q |
211 |
ttgatatgcttttggatccttgtcctccagtagttctttatctcattatcggttcttcccggtaaatgtt |
280 |
Q |
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| T |
13297869 |
ttgatatgcttttggatccttgtcctccagtagttctttatctcattatcggttcttcccggtagatgtt |
13297800 |
T |
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Back To:
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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 49848555 - 49848605
Alignment:
| Q |
228 |
ccttgtcctccagtagttctttatctcattatcggttcttcccggtaaatg |
278 |
Q |
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| T |
49848555 |
ccttgttctccaatagttctttatctcattatctgttcttcctggtaaatg |
49848605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 280
Target Start/End: Complemental strand, 38720115 - 38720064
Alignment:
| Q |
229 |
cttgtcctccagtagttctttatctcattatcggttcttcccggtaaatgtt |
280 |
Q |
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| T |
38720115 |
cttgttctccaatagttctttatttcattgtcggttcttcccggtaattgtt |
38720064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 32447494 - 32447534
Alignment:
| Q |
232 |
gtcctccagtagttctttatctcattatcggttcttcccgg |
272 |
Q |
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| T |
32447494 |
gtcctccaatagttctttatctcattgtctgttcttcccgg |
32447534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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