View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11040_low_33 (Length: 281)
Name: NF11040_low_33
Description: NF11040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11040_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 49008444 - 49008178
Alignment:
| Q |
1 |
ttgtgttgtataacatgtctgatgttgtcatcatagccgatctaatggctgctgggctccaacaagggtgcatttcttttaaaagtgctgctacacctgc |
100 |
Q |
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| T |
49008444 |
ttgtgttgtctaacatgtctgatgttgtcatcatagccgatctaatggctgctgggctccaacaagggtgcatttcttttaaaagtgctgctacacctgc |
49008345 |
T |
|
| Q |
101 |
aacgtgtggacatgacattgatgttccacttaacaagttgaagttgttgaagagattgttctggaattgcagctctgttgctggaacattttgaggccgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
49008344 |
aacgtgtggacatgacattgatgttccacttaacaagttgaagttgttgaagagattgttctggaattgcagctctgttgctggaacattttgaggccat |
49008245 |
T |
|
| Q |
201 |
gaagctaagattagtgttcctggtgctgtgatgtctggtttcaatacaaatggacaactatgtgatg |
267 |
Q |
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| T |
49008244 |
gaagctaagattagtgttcctggtgctgtgatgtctggtttcaatacaaatggacaactatgtgatg |
49008178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 153
Target Start/End: Original strand, 21686953 - 21687100
Alignment:
| Q |
6 |
ttgtataacatgtctgatgttgtcatcatagccgatctaatggctgctgggctccaacaagggtgcatttcttttaaaagtgctgctacacctgcaacgt |
105 |
Q |
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|||| ||| ||||||||||||||||| || ||||| ||||| | || |||||||||| | ||| |||||||||| ||||||||||||||||| | |
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| T |
21686953 |
ttgtctaatatgtctgatgttgtcataattgccgacctaatagatgacgggctccaaccattgtgtgccccttttaaaagcgctgctacacctgcaacat |
21687052 |
T |
|
| Q |
106 |
gtggacatgacattgatgttccacttaacaagttgaagttgttgaaga |
153 |
Q |
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| T |
21687053 |
gtggacatgacatagatgttccatctatcaaattgaagttgttaaaga |
21687100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 150
Target Start/End: Complemental strand, 8963285 - 8963150
Alignment:
| Q |
15 |
atgtctgatgttgtcatcatagccgatctaatggctgctgggctccaacaagggtgcatttcttttaaaagtgctgctacacctgcaacgtgtggacatg |
114 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| |||| ||||||||| || || | |||| ||||||||| ||||||| ||||| || ||||||| |
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| T |
8963285 |
atgtctgatgttgtcatcattgccgacctaatagctgtcgggctccaatcagcatgtgctcctttcaaaagtgctcctacaccggcaacatgaggacatg |
8963186 |
T |
|
| Q |
115 |
acattgatgttccacttaacaagttgaagttgttga |
150 |
Q |
| |
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|||| ||||||||| |||| || ||||| ||||||| |
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| T |
8963185 |
acatagatgttccagttaaaaaattgaacttgttga |
8963150 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 8974681 - 8974543
Alignment:
| Q |
15 |
atgtctgatgttgtcatcatagccgatctaatggctgctgggctccaa-caagg-gtgcatttcttttaaaagtgctgctacacctgcaacgtgtggaca |
112 |
Q |
| |
|
|||||||||||||||||||| || || ||||| ||||| ||||||||| ||| ||||| |||| ||||||||| ||||||| ||||| || ||| | |
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| T |
8974681 |
atgtctgatgttgtcatcattgctgacctaatagctgcagggctccaatcaacatgtgcag--ctttcaaaagtgctcctacaccagcaacatgaggaga |
8974584 |
T |
|
| Q |
113 |
tgacattgatgttccacttaacaagttgaagttgttgaaga |
153 |
Q |
| |
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|||||| |||||||||||||| || ||||| |||||||||| |
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|
| T |
8974583 |
tgacatagatgttccacttaaaaaattgaacttgttgaaga |
8974543 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 153
Target Start/End: Original strand, 8945860 - 8945937
Alignment:
| Q |
76 |
cttttaaaagtgctgctacacctgcaacgtgtggacatgacattgatgttccacttaacaagttgaagttgttgaaga |
153 |
Q |
| |
|
|||||||||||||| ||||||| ||||| || ||||||||| | ||||||||| |||| || ||||| |||||||||| |
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|
| T |
8945860 |
cttttaaaagtgctcctacaccggcaacatgaggacatgacgtagatgttccagttaaaaatttgaacttgttgaaga |
8945937 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 153
Target Start/End: Complemental strand, 8958210 - 8958133
Alignment:
| Q |
76 |
cttttaaaagtgctgctacacctgcaacgtgtggacatgacattgatgttccacttaacaagttgaagttgttgaaga |
153 |
Q |
| |
|
|||| |||||||| || ||||||||||| || ||||||| ||| ||||||||||||| || ||||| |||||||||| |
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| T |
8958210 |
ctttcaaaagtgccgcgacacctgcaacatgaggacatgccatagatgttccacttatcacattgaacttgttgaaga |
8958133 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 153
Target Start/End: Original strand, 19375734 - 19375811
Alignment:
| Q |
76 |
cttttaaaagtgctgctacacctgcaacgtgtggacatgacattgatgttccacttaacaagttgaagttgttgaaga |
153 |
Q |
| |
|
|||| |||||| ||||| |||||||||||| ||||||| ||| ||||||||||||| ||| ||||| |||||||||| |
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| T |
19375734 |
ctttcaaaagtaatgctatacctgcaacgtgaggacatgccatagatgttccacttatcaaattgaacttgttgaaga |
19375811 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 151
Target Start/End: Original strand, 34962579 - 34962715
Alignment:
| Q |
15 |
atgtctgatgttgtcatcatagccgatctaatggctgctgggctccaacaagggtgcatttcttttaaaagtgctgctacacctgcaacgtgtggacatg |
114 |
Q |
| |
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||||||||||||||||| || ||||| | ||| ||||||||||||||| | |||| | |||| ||||| || || ||||||||||| || || || | |
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| T |
34962579 |
atgtctgatgttgtcattattgccgaccgaattgctgctgggctccaatcactatgcactcctttcaaaagcgccgcgacacctgcaacatgagggcacg |
34962678 |
T |
|
| Q |
115 |
acattgatgttccacttaacaagttgaagttgttgaa |
151 |
Q |
| |
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||| ||||||||||||| ||| ||||| ||| |||| |
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| T |
34962679 |
ccatagatgttccacttatcaaattgaatttgctgaa |
34962715 |
T |
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