View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11040_low_34 (Length: 280)
Name: NF11040_low_34
Description: NF11040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11040_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 11849265 - 11849514
Alignment:
| Q |
18 |
ttaacacctcatgactcgcatcccataagtaccactcatatggtaaaatgttattgggatatttgatatgctgacgtgcgggtctaaacccgcagttctc |
117 |
Q |
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| T |
11849265 |
ttaacacctcatgattcgcatcccataagtaccactcatatggtaaaatgttattgggatatttgatatgcagacgtgcgggtctaaacccacagttctc |
11849364 |
T |
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| Q |
118 |
cacttctccgtacttagtgtgagttttgcaattaacagctctcaattacactcaccagtcaccactacgttttcataatctcctaatttattgtgacaaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11849365 |
cacttctccgtacttagtgtgagttttgcaattaacagctctcaattacactcaccagtcaccactatgttttcataatctcctaatttattgtgacaaa |
11849464 |
T |
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| Q |
218 |
tgtgtaggggtttcatcaagtctcggatccataggtttcatgattggtct |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11849465 |
tgtgtaggggtttcatcaagtctcggatccataggtttcatgattggtct |
11849514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 25 - 267
Target Start/End: Original strand, 11844543 - 11844785
Alignment:
| Q |
25 |
ctcatgactcgcatcccataagtaccactcatatggtaaaatgttattgggatatttgatatgctgacgtgcgggtctaaacccgcagttctccacttct |
124 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
11844543 |
ctcataactcgcatgccataagtaccactcatatggtaaaatgttattgggatatttgatatgcagacgtgcgggtctaaacccacagttctccacttct |
11844642 |
T |
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| Q |
125 |
ccgtacttagtgtgagttttgcaattaacagctctcaattacactcaccagtcaccactacgttttcataatctcctaatttattgtgacaaatgtgtag |
224 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
11844643 |
ccgtacttagggtgagttttgcaattaacagctctcaattacactcaccagtcaccactatgttttcataatctcctaatttactgtgacaaatgtgtag |
11844742 |
T |
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| Q |
225 |
gggtttcatcaagtctcggatccataggtttcatgattggtct |
267 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11844743 |
gggtttcatcaagtctcggatccataggtttcatggttggtct |
11844785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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