View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11040_low_36 (Length: 267)
Name: NF11040_low_36
Description: NF11040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11040_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 3407963 - 3407699
Alignment:
| Q |
1 |
cttttaaataggattgtattcaatacaactttaacacattacgataaagttccctttgttnnnnnnnnggatacaattaaatcaaacaattgagctcaag |
100 |
Q |
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| T |
3407963 |
cttttaaataggattgtattcaatacaactttaacacattatgataaagttccttttgttaaaaaaa-gaatacaattaaatcaaacaattgaactcaag |
3407865 |
T |
|
| Q |
101 |
tgactgacgagctctatcaaaaggcgattttttcactaggatctgagtttgattcctgaatggaacaattgttgaccagactttacttacctcttagacg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
3407864 |
tgactgacgagctctatcaaaaggcgattttttcacgaggatctgagtttgattcctgaatggaacagttgttgaccagactttacttacctcttaaacg |
3407765 |
T |
|
| Q |
201 |
aacttcaaactatcagtaaaggtttgtggtgttggcgttgtgacttcggggtctgtgctgctcctc |
266 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| || ||||| |
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| T |
3407764 |
aacttcaaactatcagtagaggtttgtggtgttggcgttgtgacttcggggtttgtgttggtcctc |
3407699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 5404443 - 5404489
Alignment:
| Q |
146 |
agtttgattcctgaatggaacaattgttgaccagactttacttacct |
192 |
Q |
| |
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| T |
5404443 |
agtttgattcctgatgggaacaattattggccagactttacttacct |
5404489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 34964188 - 34964236
Alignment:
| Q |
145 |
gagtttgattcctgaatggaacaattgttgaccagactttacttacctc |
193 |
Q |
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||||| ||||||| | ||||||||| |||||||||||||||||||||| |
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| T |
34964188 |
gagttcgattcctaatgggaacaattattgaccagactttacttacctc |
34964236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 10008036 - 10007991
Alignment:
| Q |
148 |
tttgattcctgaatggaacaattgttgaccagactttacttacctc |
193 |
Q |
| |
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||||||||||| |||||||||| ||||| |||||||||||||||| |
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| T |
10008036 |
tttgattcctggttggaacaattcttgacaagactttacttacctc |
10007991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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