View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11040_low_41 (Length: 242)
Name: NF11040_low_41
Description: NF11040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11040_low_41 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 64 - 242
Target Start/End: Complemental strand, 5015889 - 5015711
Alignment:
| Q |
64 |
caacaaattagcctctcaaatgtgtataaaatgtaccattatccactctccatttgcagcctcacaatgcttcataagcacttctccaagtgtagctagg |
163 |
Q |
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| T |
5015889 |
caacaaattagcctctcaaatgtttataaaatgtaccattatccactctccatttgcagcctcacaatgcttcataagcacttttccaagtgtagctagg |
5015790 |
T |
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| Q |
164 |
taagtatcctagtcaagctttaagaacatctgcacgaggtaaataatgtgatttcagacatccagagagcatagaatca |
242 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5015789 |
taagtatcctagtcaagctttaagaacatcagcacgaggtaaataatgtgatttcagacatccagagagcatagaatca |
5015711 |
T |
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