View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11040_low_43 (Length: 238)

Name: NF11040_low_43
Description: NF11040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11040_low_43
NF11040_low_43
[»] chr6 (2 HSPs)
chr6 (9-221)||(32980925-32981139)
chr6 (128-169)||(9024175-9024216)
[»] chr7 (2 HSPs)
chr7 (129-167)||(2525844-2525882)
chr7 (133-169)||(38134410-38134446)
[»] chr5 (2 HSPs)
chr5 (127-169)||(28296347-28296389)
chr5 (128-169)||(40211975-40212016)
[»] chr4 (1 HSPs)
chr4 (131-169)||(25390888-25390926)
[»] chr2 (3 HSPs)
chr2 (128-169)||(45000845-45000886)
chr2 (129-169)||(18570991-18571031)
chr2 (129-169)||(31026714-31026754)
[»] chr3 (1 HSPs)
chr3 (129-169)||(40697858-40697898)
[»] chr1 (1 HSPs)
chr1 (129-169)||(19637787-19637827)


Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 32981139 - 32980925
Alignment:
Q  9 agcagcagagaggaatgatgtgaaagctatagtattgacaggtaattttgatttggattgcatgtttgtcatgatctttgtagcaccaacacgtctgatc 108  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32981139 agcagcaaggaggaatgatgtgaaagctatagtattgacaggtaattttgatttggattgcatgtttgtcatgatctttgtagcaccaacacgtccgatc 32981040  T
Q  109 --aaaggcatgtccgtgtccgacgacaccgacacatatgaatatattgaattatgtcattttcatgtctcaatgtttgtgtcatgtctggtgtatgcatc 206  Q
      ||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  32981039 tcaaaggcatgtcagtgtctgacgacaccgacacatatgattatattgaattatgtcatttacatgtctcaatgtttgtgtcatgtctggtgtatgtatc 32980940  T
Q  207 tgtgcttgtgctcca 221  Q
    |||||||||||||||    
T  32980939 tgtgcttgtgctcca 32980925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 9024175 - 9024216
Alignment:
Q  128 acgacaccgacacatatgaatatattgaattatgtcattttc 169  Q
    ||||||| ||||||||||| || |||||||||||||||||||    
T  9024175 acgacactgacacatatgattacattgaattatgtcattttc 9024216  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 167
Target Start/End: Original strand, 2525844 - 2525882
Alignment:
Q  129 cgacaccgacacatatgaatatattgaattatgtcattt 167  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  2525844 cgacaccgacacatatgattatattgaattatgtcattt 2525882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 38134410 - 38134446
Alignment:
Q  133 accgacacatatgaatatattgaattatgtcattttc 169  Q
    |||||||||||||| || |||||||||||||||||||    
T  38134410 accgacacatatgattacattgaattatgtcattttc 38134446  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 28296389 - 28296347
Alignment:
Q  127 gacgacaccgacacatatgaatatattgaattatgtcattttc 169  Q
    ||||||||| |||||||||| || |||||||||||||||||||    
T  28296389 gacgacaccaacacatatgagtacattgaattatgtcattttc 28296347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 40212016 - 40211975
Alignment:
Q  128 acgacaccgacacatatgaatatattgaattatgtcattttc 169  Q
    |||||||||| |||||||| ||||||||||||||| ||||||    
T  40212016 acgacaccgatacatatgattatattgaattatgtaattttc 40211975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 25390888 - 25390926
Alignment:
Q  131 acaccgacacatatgaatatattgaattatgtcattttc 169  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  25390888 acaccgacacatatggttatattgaattatgtcattttc 25390926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 45000845 - 45000886
Alignment:
Q  128 acgacaccgacacatatgaatatattgaattatgtcattttc 169  Q
    ||||||||||||||||||| || |||||||| ||||||||||    
T  45000845 acgacaccgacacatatgattacattgaattgtgtcattttc 45000886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 18571031 - 18570991
Alignment:
Q  129 cgacaccgacacatatgaatatattgaattatgtcattttc 169  Q
    |||||| ||||||||||| || |||||||||||||||||||    
T  18571031 cgacactgacacatatgattacattgaattatgtcattttc 18570991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 31026754 - 31026714
Alignment:
Q  129 cgacaccgacacatatgaatatattgaattatgtcattttc 169  Q
    ||||||||||| |||||| || |||||||||||||||||||    
T  31026754 cgacaccgacatatatgattacattgaattatgtcattttc 31026714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 40697858 - 40697898
Alignment:
Q  129 cgacaccgacacatatgaatatattgaattatgtcattttc 169  Q
    |||||||||||||||||  || |||||||||||||||||||    
T  40697858 cgacaccgacacatatggttagattgaattatgtcattttc 40697898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 19637827 - 19637787
Alignment:
Q  129 cgacaccgacacatatgaatatattgaattatgtcattttc 169  Q
    |||||||||||||||||| || ||||||| |||||||||||    
T  19637827 cgacaccgacacatatgattacattgaataatgtcattttc 19637787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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