View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11040_low_47 (Length: 221)

Name: NF11040_low_47
Description: NF11040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11040_low_47
NF11040_low_47
[»] chr3 (30 HSPs)
chr3 (52-185)||(17727529-17727662)
chr3 (52-185)||(19028758-19028891)
chr3 (16-130)||(17727421-17727535)
chr3 (16-130)||(19028650-19028764)
chr3 (31-165)||(19333976-19334110)
chr3 (23-157)||(17941929-17942063)
chr3 (23-154)||(19464334-19464465)
chr3 (23-90)||(18103388-18103455)
chr3 (23-146)||(19414170-19414293)
chr3 (31-89)||(19461575-19461633)
chr3 (20-85)||(18016069-18016134)
chr3 (31-146)||(18115951-18116066)
chr3 (137-201)||(19414187-19414251)
chr3 (52-163)||(19424585-19424695)
chr3 (52-165)||(17727601-17727714)
chr3 (52-165)||(19028830-19028943)
chr3 (82-146)||(19351380-19351444)
chr3 (20-165)||(14896278-14896423)
chr3 (23-56)||(16677295-16677328)
chr3 (20-56)||(19351470-19351506)
chr3 (114-165)||(19436997-19437048)
chr3 (124-174)||(17727457-17727507)
chr3 (124-174)||(19028686-19028736)
chr3 (52-90)||(19437000-19437038)
chr3 (23-56)||(18146906-18146939)
chr3 (124-172)||(17941986-17942034)
chr3 (28-56)||(17949908-17949936)
chr3 (54-90)||(18108409-18108445)
chr3 (82-150)||(19424669-19424737)
chr3 (82-130)||(25463052-25463100)
[»] chr6 (1 HSPs)
chr6 (23-88)||(13666841-13666906)
[»] chr4 (3 HSPs)
chr4 (52-93)||(15532318-15532359)
chr4 (23-56)||(2710467-2710500)
chr4 (23-56)||(15535609-15535642)
[»] scaffold0648 (2 HSPs)
scaffold0648 (82-158)||(4053-4129)
scaffold0648 (57-89)||(4100-4132)
[»] scaffold0640 (2 HSPs)
scaffold0640 (82-158)||(5377-5453)
scaffold0640 (57-89)||(5374-5406)
[»] scaffold0274 (2 HSPs)
scaffold0274 (82-158)||(3523-3599)
scaffold0274 (57-89)||(3570-3602)
[»] chr8 (1 HSPs)
chr8 (52-90)||(8459446-8459484)


Alignment Details
Target: chr3 (Bit Score: 102; Significance: 8e-51; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 52 - 185
Target Start/End: Original strand, 17727529 - 17727662
Alignment:
Q  52 ggaattgatccttgtagttggtttttagagagatcaaggatttgaatatttgatagtttgcatattccatctggaattgatcttcgtagttggttttcag 151  Q
    ||||||| ||| |||| |||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  17727529 ggaattggtccctgtaattggttatgagagagatcaaggatttgaatatttgatagattgcatattccatctggaattgatcctcgtagttggttttcag 17727628  T
Q  152 agagatcgaggtgtttaatatgtactagtctgcc 185  Q
    ||||||||||||||| ||||||||||||||||||    
T  17727629 agagatcgaggtgttgaatatgtactagtctgcc 17727662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 52 - 185
Target Start/End: Original strand, 19028758 - 19028891
Alignment:
Q  52 ggaattgatccttgtagttggtttttagagagatcaaggatttgaatatttgatagtttgcatattccatctggaattgatcttcgtagttggttttcag 151  Q
    ||||||| ||| |||| |||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  19028758 ggaattggtccctgtaattggttatgagagagatcaaggatttgaatatttgatagattgcatattccatctggaattgatcctcgtagttggttttcag 19028857  T
Q  152 agagatcgaggtgtttaatatgtactagtctgcc 185  Q
    ||||||||||||||| ||||||||||||||||||    
T  19028858 agagatcgaggtgttgaatatgtactagtctgcc 19028891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 17727421 - 17727535
Alignment:
Q  16 aagaaaattaaagatgagaggtttcctagagttgaaggaattgatccttgtagttggtttttagagagatcaaggatttgaatatttgatagtttgcata 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||| ||  |||| || ||    
T  17727421 aagaaaattaaagatgagaggtttcctagagttgaaggaattgatccttgtagttggtttttagagagatcgaggtcttgaatatgtgcaagttggccta 17727520  T
Q  116 ttccatctggaattg 130  Q
    | |||| ||||||||    
T  17727521 tcccatatggaattg 17727535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 19028650 - 19028764
Alignment:
Q  16 aagaaaattaaagatgagaggtttcctagagttgaaggaattgatccttgtagttggtttttagagagatcaaggatttgaatatttgatagtttgcata 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||| ||  |||| || ||    
T  19028650 aagaaaattaaagatgagaggtttcctagagttgaaggaattgatccttgtagttggtttttagagagatcgaggtcttgaatatgtgcaagttggccta 19028749  T
Q  116 ttccatctggaattg 130  Q
    | |||| ||||||||    
T  19028750 tcccatatggaattg 19028764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 31 - 165
Target Start/End: Complemental strand, 19334110 - 19333976
Alignment:
Q  31 gagaggtttcctagagttgaaggaattgatccttgtagttggtttttagagagatcaaggatttgaatatttgatagtttgcatattccatctggaattg 130  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||   ||||||||  || |||| || |||| | ||||||| ||    
T  19334110 gagaggtttcctagagttgaaggaatagatccttgtagttggttttcagagagatcaagttgttgaatatgggaaagttggcctatttcttctggaactg 19334011  T
Q  131 atcttcgtagttggttttcagagagatcgaggtgt 165  Q
    ||| | |||||||||| | ||||||||| ||||||    
T  19334010 atccttgtagttggttataagagagatcaaggtgt 19333976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 23 - 157
Target Start/End: Complemental strand, 17942063 - 17941929
Alignment:
Q  23 ttaaagatgagaggtttcctagagttgaaggaattgatccttgtagttggtttttagagagatcaaggatttgaatatttgatagtttgcatattccatc 122  Q
    |||| |||||||||||||||||||| |  ||||||||||||||||||| ||||| ||||||||| |||  ||||||||||| ||||| || ||||||||     
T  17942063 ttaatgatgagaggtttcctagagtcgtgggaattgatccttgtagttcgttttcagagagatcgaggtattgaatatttggtagttggcctattccatt 17941964  T
Q  123 tggaattgatcttcgtagttggttttcagagagat 157  Q
    |||||||  || | |||||||||| | ||||||||    
T  17941963 tggaattagtccttgtagttggttataagagagat 17941929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 23 - 154
Target Start/End: Complemental strand, 19464465 - 19464334
Alignment:
Q  23 ttaaagatgagaggtttcctagagttgaaggaattgatccttgtagttggtttttagagagatcaaggatttgaatatttgatagtttgcatattccatc 122  Q
    |||||||||||||||||||||| || || ||||||||||||||||| |||||||  |||||||||||   |||||||| || ||||| || ||||| |||    
T  19464465 ttaaagatgagaggtttcctagtgtcgacggaattgatccttgtagctggttttccgagagatcaagctcttgaatatgtgctagttggcctattctatc 19464366  T
Q  123 tggaattgatcttcgtagttggttttcagaga 154  Q
    || |||||||| | ||||||| ||||| ||||    
T  19464365 tgaaattgatccttgtagttgtttttccgaga 19464334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 18103455 - 18103388
Alignment:
Q  23 ttaaagatgagaggtttcctagagttgaaggaattgatccttgtagttggtttttagagagatcaagg 90  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||    
T  18103455 ttaaggatgagaggtttcctagagttgagggaattgatccttgtagttggttataagagagatcaagg 18103388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 146
Target Start/End: Complemental strand, 19414293 - 19414170
Alignment:
Q  23 ttaaagatgagaggtttcctagagttgaaggaattgatccttgtagttggtttttagagagatcaaggatttgaatatttgatagtttgcatattccatc 122  Q
    |||| |||| ||| ||||||||||||||| ||||  |||||||||||||||||| ||||||||| |||  |||||||| || || ||||| |||||||||    
T  19414293 ttaaggatgggagatttcctagagttgaaagaatgaatccttgtagttggttttcagagagatcgaggtgttgaatatgtgctaatttgcctattccatc 19414194  T
Q  123 tggaattgatcttcgtagttggtt 146  Q
    ||||| ||| | | ||||||||||    
T  19414193 tggaactgacccttgtagttggtt 19414170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 31 - 89
Target Start/End: Complemental strand, 19461633 - 19461575
Alignment:
Q  31 gagaggtttcctagagttgaaggaattgatccttgtagttggtttttagagagatcaag 89  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  19461633 gagaggtttcctagagttgaaggaatagatccttgtagttggttttcagagagatcaag 19461575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 18016134 - 18016069
Alignment:
Q  20 aaattaaagatgagaggtttcctagagttgaaggaattgatccttgtagttggtttttagagagat 85  Q
    ||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  18016134 aaattaaggatgacaggtttcctagagttgaaggaatagatccttgtagttggttattagagagat 18016069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 31 - 146
Target Start/End: Complemental strand, 18116066 - 18115951
Alignment:
Q  31 gagaggtttcctagagttgaaggaattgatccttgtagttggtttttagagagatcaaggatttgaatatttgatagtttgcatattccatctggaattg 130  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||   ||||||||  |  |||| || |||| | ||||||||||    
T  18116066 gagagatttcctagagttgaaggaatagatccttgtagttggttttcagagagatcaagttgttgaatatgggcaagttggcctatttcttctggaattg 18115967  T
Q  131 atcttcgtagttggtt 146  Q
    ||  | ||||||||||    
T  18115966 attcttgtagttggtt 18115951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 19414251 - 19414187
Alignment:
Q  137 gtagttggttttcagagagatcgaggtgtttaatatgtactagtctgcccattccatctggaact 201  Q
    |||||||||||||||||||||||||||||| ||||||| ||| | |||| |||||||||||||||    
T  19414251 gtagttggttttcagagagatcgaggtgttgaatatgtgctaatttgcctattccatctggaact 19414187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 52 - 163
Target Start/End: Complemental strand, 19424695 - 19424585
Alignment:
Q  52 ggaattgatccttgtagttggtttttagagagatcaaggatttgaatatttgatagtttgcatattccatctggaattgatcttcgtagttggttttcag 151  Q
    ||||||||||||||||||||||||| |   |||| || | ||||||||||| | |  | || |||||||||||||||||||| |  ||||||||||||||    
T  19424695 ggaattgatccttgtagttggttttcatgaagatgaatgttttgaatattt-acaaatggcctattccatctggaattgatccttatagttggttttcag 19424597  T
Q  152 agagatcgaggt 163  Q
    ||||||| ||||    
T  19424596 agagatcaaggt 19424585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 165
Target Start/End: Original strand, 17727601 - 17727714
Alignment:
Q  52 ggaattgatccttgtagttggtttttagagagatcaaggatttgaatatttgatagtttgcatattccatctggaattgatcttcgtagttggttttcag 151  Q
    |||||||||||| |||||||||||| ||||||||| |||  |||||||| |  |||| ||| |||  ||| ||||| ||| | | |||||||||||||||    
T  17727601 ggaattgatcctcgtagttggttttcagagagatcgaggtgttgaatatgtactagtctgcctatatcatatggaactgacccttgtagttggttttcag 17727700  T
Q  152 agagatcgaggtgt 165  Q
    ||||| | ||||||    
T  17727701 agagaccaaggtgt 17727714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 165
Target Start/End: Original strand, 19028830 - 19028943
Alignment:
Q  52 ggaattgatccttgtagttggtttttagagagatcaaggatttgaatatttgatagtttgcatattccatctggaattgatcttcgtagttggttttcag 151  Q
    |||||||||||| |||||||||||| ||||||||| |||  |||||||| |  |||| ||| |||  ||| ||||| ||| | | |||||||||||||||    
T  19028830 ggaattgatcctcgtagttggttttcagagagatcgaggtgttgaatatgtactagtctgcctatatcatatggaactgacccttgtagttggttttcag 19028929  T
Q  152 agagatcgaggtgt 165  Q
    ||||| | ||||||    
T  19028930 agagaccaaggtgt 19028943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 146
Target Start/End: Complemental strand, 19351444 - 19351380
Alignment:
Q  82 agatcaaggatttgaatatttgatagtttgcatattccatctggaattgatcttcgtagttggtt 146  Q
    |||||||||  ||||||||||| ||||| || |||||||||||||||||||| | ||||||||||    
T  19351444 agatcaaggtattgaatatttggtagttggcttattccatctggaattgatccttgtagttggtt 19351380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 14896278 - 14896423
Alignment:
Q  20 aaattaaagatgagaggtttcctagagttgaaggaattgatccttgtagttggtttttagagagatcaaggatttgaatatttgatagtttgcatattcc 119  Q
    ||||||| |||||||||||||||||||||||||||||  | ||   ||    |||  | || |||||||||  ||||||||||| |||||  | |||||     
T  14896278 aaattaaggatgagaggtttcctagagttgaaggaatgaaaccgcttaacatgttcattgaaagatcaaggtgttgaatatttggtagttgccctattct 14896377  T
Q  120 atctggaattgatcttcgtagttggttttcagagagatcgaggtgt 165  Q
    |||||||||||||| | |||| | ||||| ||||||||| ||||||    
T  14896378 atctggaattgatccttgtaggttgtttttagagagatcaaggtgt 14896423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 16677328 - 16677295
Alignment:
Q  23 ttaaagatgagaggtttcctagagttgaaggaat 56  Q
    ||||||||||||||||||||||||||||||||||    
T  16677328 ttaaagatgagaggtttcctagagttgaaggaat 16677295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 19351506 - 19351470
Alignment:
Q  20 aaattaaagatgagaggtttcctagagttgaaggaat 56  Q
    ||||||| |||||||||||||||||||||||||||||    
T  19351506 aaattaaggatgagaggtttcctagagttgaaggaat 19351470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 165
Target Start/End: Complemental strand, 19437048 - 19436997
Alignment:
Q  114 tattccatctggaattgatcttcgtagttggttttcagagagatcgaggtgt 165  Q
    |||||||||||||||||||| | |||||||||| | ||||||||| ||||||    
T  19437048 tattccatctggaattgatccttgtagttggttataagagagatcaaggtgt 19436997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 17727457 - 17727507
Alignment:
Q  124 ggaattgatcttcgtagttggttttcagagagatcgaggtgtttaatatgt 174  Q
    |||||||||| | |||||||||||| |||||||||||||| || |||||||    
T  17727457 ggaattgatccttgtagttggtttttagagagatcgaggtcttgaatatgt 17727507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 19028686 - 19028736
Alignment:
Q  124 ggaattgatcttcgtagttggttttcagagagatcgaggtgtttaatatgt 174  Q
    |||||||||| | |||||||||||| |||||||||||||| || |||||||    
T  19028686 ggaattgatccttgtagttggtttttagagagatcgaggtcttgaatatgt 19028736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 90
Target Start/End: Complemental strand, 19437038 - 19437000
Alignment:
Q  52 ggaattgatccttgtagttggtttttagagagatcaagg 90  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  19437038 ggaattgatccttgtagttggttataagagagatcaagg 19437000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 18146939 - 18146906
Alignment:
Q  23 ttaaagatgagaggtttcctagagttgaaggaat 56  Q
    |||| |||||||||||||||||||||||||||||    
T  18146939 ttaaggatgagaggtttcctagagttgaaggaat 18146906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 17942034 - 17941986
Alignment:
Q  124 ggaattgatcttcgtagttggttttcagagagatcgaggtgtttaatat 172  Q
    |||||||||| | |||||| |||||||||||||||||||| || |||||    
T  17942034 ggaattgatccttgtagttcgttttcagagagatcgaggtattgaatat 17941986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 56
Target Start/End: Complemental strand, 17949936 - 17949908
Alignment:
Q  28 gatgagaggtttcctagagttgaaggaat 56  Q
    |||||||||||||||||||||||||||||    
T  17949936 gatgagaggtttcctagagttgaaggaat 17949908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 18108445 - 18108409
Alignment:
Q  54 aattgatccttgtagttggtttttagagagatcaagg 90  Q
    ||||||||||||||||||||| || ||||||||||||    
T  18108445 aattgatccttgtagttggttatttgagagatcaagg 18108409  T

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Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 150
Target Start/End: Complemental strand, 19424737 - 19424669
Alignment:
Q  82 agatcaaggatttgaatatttgatagtttgcatattccatctggaattgatcttcgtagttggttttca 150  Q
    ||||||||| ||||||||| || ||||| || |||||| |  |||||||||| | ||||||||||||||    
T  19424737 agatcaaggctttgaatatgtgctagttggcctattccgtgcggaattgatccttgtagttggttttca 19424669  T

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Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 25463100 - 25463052
Alignment:
Q  82 agatcaaggatttgaatatttgatagtttgcatattccatctggaattg 130  Q
    |||||||||  ||||||||||| ||||| || |||||||||||||||||    
T  25463100 agatcaaggtattgaatatttggtagttggcctattccatctggaattg 25463052  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 13666841 - 13666906
Alignment:
Q  23 ttaaagatgagaggtttcctagagttgaaggaattgatccttgtagttggtttttagagagatcaa 88  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| | ||||| | |||||||||    
T  13666841 ttaaggatgagaggtttcctagagttgaaggaattgatccttgtaggttgttttcaaagagatcaa 13666906  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 15532359 - 15532318
Alignment:
Q  52 ggaattgatccttgtagttggtttttagagagatcaaggatt 93  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  15532359 ggaattgatccttgtagttggttattagagagatcaaggatt 15532318  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 2710467 - 2710500
Alignment:
Q  23 ttaaagatgagaggtttcctagagttgaaggaat 56  Q
    |||| |||||||||||||||||||||||||||||    
T  2710467 ttaaggatgagaggtttcctagagttgaaggaat 2710500  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 15535642 - 15535609
Alignment:
Q  23 ttaaagatgagaggtttcctagagttgaaggaat 56  Q
    |||| |||||||||||||||||||||||||||||    
T  15535642 ttaaggatgagaggtttcctagagttgaaggaat 15535609  T

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Target: scaffold0648 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 158
Target Start/End: Original strand, 4053 - 4129
Alignment:
Q  82 agatcaaggatttgaatatttgatagtttgcatattccatctggaattgatcttcgtagttggttttcagagagatc 158  Q
    |||||||||  ||||||||||| |||||  | |||||||| || || ||||| | ||||||||||||||||||||||    
T  4053 agatcaaggtgttgaatatttgctagttgacctattccatgtgaaactgatccttgtagttggttttcagagagatc 4129  T

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Target: scaffold0648; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 4100 - 4132
Alignment:
Q  57 tgatccttgtagttggtttttagagagatcaag 89  Q
    |||||||||||||||||||| ||||||||||||    
T  4100 tgatccttgtagttggttttcagagagatcaag 4132  T

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Target: scaffold0640 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 5453 - 5377
Alignment:
Q  82 agatcaaggatttgaatatttgatagtttgcatattccatctggaattgatcttcgtagttggttttcagagagatc 158  Q
    |||||||||  ||||||||||| |||||  | |||||||| || || ||||| | ||||||||||||||||||||||    
T  5453 agatcaaggtgttgaatatttgctagttgacctattccatgtgaaactgatccttgtagttggttttcagagagatc 5377  T

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Target: scaffold0640; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 89
Target Start/End: Complemental strand, 5406 - 5374
Alignment:
Q  57 tgatccttgtagttggtttttagagagatcaag 89  Q
    |||||||||||||||||||| ||||||||||||    
T  5406 tgatccttgtagttggttttcagagagatcaag 5374  T

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Target: scaffold0274 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 158
Target Start/End: Original strand, 3523 - 3599
Alignment:
Q  82 agatcaaggatttgaatatttgatagtttgcatattccatctggaattgatcttcgtagttggttttcagagagatc 158  Q
    |||||||||  ||||||||||| |||||  | |||||||| || || ||||| | ||||||||||||||||||||||    
T  3523 agatcaaggtgttgaatatttgctagttgacctattccatgtgaaactgatccttgtagttggttttcagagagatc 3599  T

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Target: scaffold0274; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 3570 - 3602
Alignment:
Q  57 tgatccttgtagttggtttttagagagatcaag 89  Q
    |||||||||||||||||||| ||||||||||||    
T  3570 tgatccttgtagttggttttcagagagatcaag 3602  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 90
Target Start/End: Complemental strand, 8459484 - 8459446
Alignment:
Q  52 ggaattgatccttgtagttggtttttagagagatcaagg 90  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  8459484 ggaattgatccttgtagttggttataagagagatcaagg 8459446  T

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