View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11040_low_51 (Length: 202)
Name: NF11040_low_51
Description: NF11040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11040_low_51 |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 4e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 21 - 187
Target Start/End: Original strand, 19797112 - 19797278
Alignment:
| Q |
21 |
caaattccaaaaaactttcacagtattgactgcattgttaataatattcgcttatctctcttaaaagccaaccttcgtggcaaactatccatttctgctt |
120 |
Q |
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| T |
19797112 |
caaattccaacaaactttgacagtattgactgcattgttaataatattcgattagctctcttaaaagccaaccttcgtggcaaactatccatttctgctt |
19797211 |
T |
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| Q |
121 |
atggaaacacaaatctcatcgctagtgggcttcaacatgcactctccaccgcaggcatccccctatg |
187 |
Q |
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| T |
19797212 |
atggaaacacaaatctcatcgctagtgggcttcaacatgcactctccaccgcaggcatccccctatg |
19797278 |
T |
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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 146
Target Start/End: Original strand, 19796390 - 19796483
Alignment:
| Q |
53 |
cattgttaataatattcgcttatctctcttaaaagccaaccttcgtggcaaactatccatttctgcttatggaaacacaaatctcatcgctagt |
146 |
Q |
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| T |
19796390 |
cattgctaagaatattcacttagctctctccaatgtcaaccttcatggcagactaaccatttctgcttatggaaactccgatctcatccctagt |
19796483 |
T |
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