View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11040_low_6 (Length: 582)

Name: NF11040_low_6
Description: NF11040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11040_low_6
NF11040_low_6
[»] chr8 (3 HSPs)
chr8 (22-575)||(14003254-14003806)
chr8 (22-575)||(5766998-5767553)
chr8 (240-285)||(17627610-17627655)
[»] chr1 (1 HSPs)
chr1 (245-319)||(19468064-19468138)
[»] chr5 (1 HSPs)
chr5 (119-346)||(38266985-38267213)
[»] chr4 (5 HSPs)
chr4 (134-265)||(641449-641580)
chr4 (241-319)||(547382-547460)
chr4 (239-337)||(55908278-55908376)
chr4 (116-176)||(1601013-1601073)
chr4 (137-262)||(3438101-3438226)
[»] scaffold0262 (1 HSPs)
scaffold0262 (245-315)||(390-460)
[»] chr2 (1 HSPs)
chr2 (239-337)||(1037214-1037312)


Alignment Details
Target: chr8 (Bit Score: 526; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 22 - 575
Target Start/End: Complemental strand, 14003806 - 14003254
Alignment:
Q  22 actgttactactggtttggaacatcttacctcacatttcatcgactccttgttgagtttgaagggatttgacttctcttcttttgacgggatttcgtatc 121  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  14003806 actgttactactggtttggaatatcttacctcacatttcatcgactccttgttgagtttgaagggatt-gacttctcttcttttgacgggatttcatatc 14003708  T
Q  122 tcagatcaattcctctcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaatctcatttt 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14003707 tcagatcaattcctctcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaatctcatttt 14003608  T
Q  222 tgttatctaagtcgaaacgtatccaacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgatct 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14003607 tgttatctaagtcgaaacgtatccaacatttggatcttcaatatgctgattttttgaatgatcattgtgctgctgagttgtctttgtttcttggtgatct 14003508  T
Q  322 gctctctatcaaccttggtaattgtcgcttgcgcagagtttccactttctttgctctcattaccaactgtccttcacttaccgagatcaatatgaatcgc 421  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14003507 gctctctatcaaccttggtaattgtcgcttgctcacagtttccactttctttgctctcattaccaactgtccttcacttaccgagatcaatatgaatcgc 14003408  T
Q  422 acaaatatccagggaaccaccatacctaattctctgatggatcgtcttgtaaaccctcaattcaagtctctctttctggctagcacttgtttacaagatc 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14003407 acaaatatccagggaaccaccatacctaattctctgatggatcgtcttgtaaaccctcaattcaagtctctctttctggctagcacttgtttacaagatc 14003308  T
Q  522 aaaatatcatcatgtttgctgcccttttccccaatctgcagcagcttcatctca 575  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14003307 aaaatatcatcatgtttgctgcccttttccccaatctgcagcagcttcatctca 14003254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 22 - 575
Target Start/End: Original strand, 5766998 - 5767553
Alignment:
Q  22 actgttactactggtttggaacatcttacctcacatttcatcgactccttgttgagtttgaagggatttgacttctcttcttttgacgggatttcgtatc 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5766998 actgttactactggtttggaacatcttacctcacatttcatcgactccttgttgagtttgaagggatt-gacttctcttcttttgacgggatttcgtatc 5767096  T
Q  122 tcagatcaattcctctcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaatctcatttt 221  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5767097 tcagatcaatttctctcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaatctcatttt 5767196  T
Q  222 tgttatctaagtcgaaacgtatccaacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgatct 321  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5767197 tgttatctaagtcgaaacgtatccaacatttggatcttcaatatactgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgatct 5767296  T
Q  322 gctctctatcaaccttggtaattgtcgcttgcgcagagtttccactttctttgctctcattaccaactgtccttcacttaccgagatcaatatgaatcgc 421  Q
    ||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5767297 gctctctctcaaccttggtaattgtcgcttgctcacagtttccactttctttgctctcattaccaactgtccttcacttaccgagatcaatatgaatcgc 5767396  T
Q  422 acaaatatccagggaaccaccatacctaattctctgatggatcgtcttgtaaaccctcaattcaagtctctctttctggctag---cacttgtttacaag 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   | |||||||| |||    
T  5767397 acaaatatccagggaaccaccatacctaattctctgatggatcgtcttgtaaaccctcaattcaagtctctctttctggctagcgccgcttgtttagaag 5767496  T
Q  519 atcaaaatatcatcatgtttgctgcccttttccccaatctgcagcagcttcatctca 575  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5767497 atcaaaatatcatcatgtttgctgcccttttccccaatctgcagcagcttcatctca 5767553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 17627610 - 17627655
Alignment:
Q  240 gtatccaacatttggatcttcaatatgctgattttttgaatgatca 285  Q
    |||||||||||||||||||||| |||||| ||||||||||| ||||    
T  17627610 gtatccaacatttggatcttcagtatgcttattttttgaataatca 17627655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 245 - 319
Target Start/End: Original strand, 19468064 - 19468138
Alignment:
Q  245 caacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgat 319  Q
    ||||||||||||||||||  |||||  |||||||||||||| | ||||| | |||||||||||||||||||||||    
T  19468064 caacatttggatcttcaacgtgctgggtttttgaatgatcactatgttgataagttgtctttgtttcttggtgat 19468138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 346
Target Start/End: Original strand, 38266985 - 38267213
Alignment:
Q  119 atctcagatcaattcctctcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaatc-tca 217  Q
    ||||| ||||| ||||| ||||| ||||||||| ||||||||||||||| ||| ||||  ||| | |||||| |||| || ||||  ||||||||| |      
T  38266985 atctccgatcacttcctttcctctattgcaatgcaaagtcttcctttgacgagccttggcctcggatattgcaccggctacactttctctggaatcttgc 38267084  T
Q  218 tttttgttatctaagtcgaaacgtatccaacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtg 317  Q
    ||||| |||||  | |    |||||| ||||||||||| |||||| |  |||||||| | | ||||||   |||||| ||||||||||||||||||  |     
T  38267085 ttttttttatcctactgtccacgtatacaacatttggaccttcaagaaactgattttctcactgatcaccatgttgccgagttgtctttgtttcttcctc 38267184  T
Q  318 atctgctctctatcaaccttggtaattgt 346  Q
    ||||| | ||||| |||||| || |||||    
T  38267185 atctggtgtctataaaccttagttattgt 38267213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 134 - 265
Target Start/End: Complemental strand, 641580 - 641449
Alignment:
Q  134 ctctcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaatctcatttttgttatctaagt 233  Q
    |||||||| ||||||||| || | |||||||||| ||| ||||| ||| || ||||| |||| |||||||||  ||||||||  | ||||||||| |||     
T  641580 ctctcctctattgcaatgaaaggccttcctttgacgagacttgtcctctgcaattgcaccggctatacttatgatggaatcttgtgtttgttatccaaga 641481  T
Q  234 cgaaacgtatccaacatttggatcttcaatat 265  Q
      ||| || | |||||| ||||||||||||||    
T  641480 gtaaatgtttacaacatctggatcttcaatat 641449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 319
Target Start/End: Complemental strand, 547460 - 547382
Alignment:
Q  241 tatccaacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgat 319  Q
    |||||||||||| ||||||||| |||||| |||||||| | ||||   ||||  ||| |||||||||||||||||||||    
T  547460 tatccaacatttagatcttcaaaatgctgtttttttgactaatcaacatgttcttgacttgtctttgtttcttggtgat 547382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 337
Target Start/End: Original strand, 55908278 - 55908376
Alignment:
Q  239 cgtatccaacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgatctgctctctatcaacctt 337  Q
    ||||| |||||||||||||||||| ||||    ||| ||||||||||   ||| || |||||||||||||||||||||||| || | ||||| ||||||    
T  55908278 cgtatacaacatttggatcttcaaaatgccacgtttatgaatgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaacctt 55908376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 1601073 - 1601013
Alignment:
Q  116 cgtatctcagatcaattcctctcctccattgcaatggaaagtcttcctttgaggaggcttg 176  Q
    |||||||| ||||| || |||||||| ||||||| ||||| || |||||||||||||||||    
T  1601073 cgtatctcggatcagttgctctcctctattgcaaaggaaaatcctcctttgaggaggcttg 1601013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 262
Target Start/End: Original strand, 3438101 - 3438226
Alignment:
Q  137 tcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaatctcatttttgttatctaagtcga 236  Q
    ||||| |||||||| | | ||||||||||||| |||||||| |||  | ||||| |||| |||| |||| ||| |||||  | | ||||||| ||||       
T  3438101 tcctctattgcaattggaggtcttcctttgagaaggcttgtcctccacaattgcaccggctatagttatgctgaaatcttttctctgttatccaagtgtc 3438200  T
Q  237 aacgtatccaacatttggatcttcaa 262  Q
    || |||| ||||||||||||||||||    
T  3438201 aatgtatacaacatttggatcttcaa 3438226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 315
Target Start/End: Complemental strand, 460 - 390
Alignment:
Q  245 caacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttgg 315  Q
    |||||||||||||||||| ||||    ||| |||||||||||  |||||| ||||||||||||||||||||    
T  460 caacatttggatcttcaaaatgccatgtttatgaatgatcatgatgttgcagagttgtctttgtttcttgg 390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 337
Target Start/End: Original strand, 1037214 - 1037312
Alignment:
Q  239 cgtatccaacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgatctgctctctatcaacctt 337  Q
    ||||| |||||||||||||||||| ||||    ||| ||||||||||   ||| || |||||||||||||||||||||||| || | ||||| ||||||    
T  1037214 cgtatacaacatttggatcttcaaaatgccacgtttatgaatgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaacctt 1037312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University