View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11040_low_9 (Length: 520)
Name: NF11040_low_9
Description: NF11040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11040_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 8 - 506
Target Start/End: Original strand, 47261959 - 47262457
Alignment:
| Q |
8 |
tagcataggataggacaacaaaaacttaggaaattttacagatacagtataaccacaactaaatgataatgatctatattctatatatctaccaagtacc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47261959 |
tagcataggataggacaacaaaaacttaggaaattttacagatacagtataaccacaactaaatgataatgatctatattctatatatctaccaagtacc |
47262058 |
T |
|
| Q |
108 |
aaccacataaagattaatatcatcaaaacttgacaaaagttgaagaaaacagtgtccaagtccaactaaccttatgcttggtccggagtaaccaaagcta |
207 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47262059 |
aaccaaataaagattaatatcatcaaaacttgacaaaagttgaagaaaacagtgtccaagtccaactaaccttatgcttggtccggagtaaccaaagcta |
47262158 |
T |
|
| Q |
208 |
tttctagcaaccaaaccaatagcaaagttgttaaaatcagtggtattatacaaggaatctccaagaatcaaaaactccaaagcagaaacaaacgggtcag |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47262159 |
tttctagcaaccaaaccaatagcaaagttgttaaaatcagtggtattatacaaggaatctccaagaatcaaaaactccaaagcagaaacaaacgggtcag |
47262258 |
T |
|
| Q |
308 |
aatccgtataactattcgacccgatacaaaaactcataaacttccccacagccaaaaataccccttcataaaaactcgagtttccattagcataatccac |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47262259 |
aatccgtataactattcgacccgatacaaaaactcataaacttccccacagccaaaaataccccttcataaaaactcgagtttccattagcataatccac |
47262358 |
T |
|
| Q |
408 |
cgtagtattcaccacactccataacgttccatcaacgatctgatcaaacaccggcggcgtaagatgatcaacaccgttggctccaccgtagaaataagt |
506 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
47262359 |
cgtagtattcaccacactccataacgttccatcaatgatctgatcaaacaccggcggcgtaggatgatcaacaccgttgactccaccgtagaaataagt |
47262457 |
T |
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