View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11041_high_4 (Length: 308)
Name: NF11041_high_4
Description: NF11041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11041_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 115 - 292
Target Start/End: Complemental strand, 18317781 - 18317600
Alignment:
| Q |
115 |
aaaataaaatgttcaatataacaaaaacaaatttcaaaccaattttttgatagtaatcataacataaaattgcttgt-----ctcttgtttaatgctaga |
209 |
Q |
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| T |
18317781 |
aaaataaaatgtacaatataacaaaag-aaatttgaaaccaatattttgatagtaaccataacataaaattgcttgtatcatctcttctttaatgctaga |
18317683 |
T |
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| Q |
210 |
aaactaagaaaatatattgatttttaggaatctaattctcttaaagacataccagtggtgattatgtcctcagagaatgttcc |
292 |
Q |
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| T |
18317682 |
aaactaagaaaatatattgatttgcaggaatctaattctcttaaagacataccagtggtgattatgtcctcagagaatgttcc |
18317600 |
T |
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Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 115 - 289
Target Start/End: Original strand, 4492466 - 4492644
Alignment:
| Q |
115 |
aaaataaaatgttcaatataacaaaaacaaatttcaaaccaattttttgatagtaatcataacataaaattgcttgt-----ctcttgtttaatgctaga |
209 |
Q |
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| T |
4492466 |
aaaataaaatgtacaatataacaaaag-aaatttgaaaccaatattttgatagtaaccataacataaaattgcttgtatcatctcttctttaatgctaga |
4492564 |
T |
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| Q |
210 |
aaactaagaaaatatattgatttttaggaatctaattctcttaaagacataccagtggtgattatgtcctcagagaatgt |
289 |
Q |
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| T |
4492565 |
aaactaagaaaatatattgatttgcaggaatctaattctcttaaagacataccagtggtgattatgtcctcagagaatgt |
4492644 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 35462022 - 35461985
Alignment:
| Q |
256 |
acataccagtggtgattatgtcctcagagaatgttcct |
293 |
Q |
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| T |
35462022 |
acataccagtggtgattatgtcatctgagaatgttcct |
35461985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 14325002 - 14324962
Alignment:
| Q |
252 |
aaagacataccagtggtgattatgtcctcagagaatgttcc |
292 |
Q |
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| T |
14325002 |
aaagacataccagttgtgataatgtcctcggagaatgttcc |
14324962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 1614332 - 1614372
Alignment:
| Q |
250 |
ttaaagacataccagtggtgattatgtcctcagagaatgtt |
290 |
Q |
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| T |
1614332 |
ttaaagacataccggttgtgattatgtcttcagagaatgtt |
1614372 |
T |
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