View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11041_low_1 (Length: 721)
Name: NF11041_low_1
Description: NF11041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11041_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 665; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 665; E-Value: 0
Query Start/End: Original strand, 1 - 705
Target Start/End: Original strand, 34866847 - 34867551
Alignment:
| Q |
1 |
taccacccaaaagctcaccccaaagcaccgcaatccaacccatgaaccactcttaaaatccattaaaagctgaaccaccacaattatccgacaaaccaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34866847 |
taccacccaaaagctcaccccaaagcaccgcaatccaatccatgaaccactcttaaaatccattaaaagctgaaccaccacaattatccgacaaaccaaa |
34866946 |
T |
|
| Q |
101 |
tctgacaaactagttccaaggaactctagacaccagatttgttttttcgttgacctccagaagcttcttgaaacacataaggcatttccatggcagctgg |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34866947 |
tctgactaactagttccaaggaactctagacaccagatctgttttttcgttgacctccagaagcttcttgaaacacataaggcatttccatggcagccgg |
34867046 |
T |
|
| Q |
201 |
ttagcatgcacaatgccacttaagcaacaattttgaagagtgatgactataatgactcacaataaaaatactacaagcaaagagtcctcacggcttcaaa |
300 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34867047 |
ttagcatgcataatgccacttaagcaacaattttgaagagtgatgactataatgactcacaataaaaatactacaagcaaagagtcctcacggcttcaaa |
34867146 |
T |
|
| Q |
301 |
aatattatcacagaagtggataaacatgccatatcttaacccataaaattcaaaatgaaaattaatggagttttgtgtaataagccacgtaaagaaagag |
400 |
Q |
| |
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||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34867147 |
aatatcatcacagaagtggataaccatgccatatcttaacccataaaattcaaaatgaaaattaatggagttttgtgtaacaagccacgtaaagaaagag |
34867246 |
T |
|
| Q |
401 |
atagaagataatctcaaagagaaaccatgccatatctttctcagcagctaccaaagattcggatctagatccgaacccaactaccaagtccggatctaaa |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34867247 |
atagaagataatctcaaagagaaaccatgccatatctttctcagcagctaccaaagattcggatctagatccgaacccaactaccaagtccggatctaaa |
34867346 |
T |
|
| Q |
501 |
tctactaccacaaaccaccatgagccaccaccagtttgttctccccttaacaatctcaaaatcttctccatatctttttagccagtttcctatctccatt |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
34867347 |
tctactaccacaaaccaccatgagccaccaccagtttgttctacccttaacaatctcaaaatcttctccatatctttttagccagtttcccatctccatt |
34867446 |
T |
|
| Q |
601 |
ccaaacatcaaatgaattgtgtgaaattgaggcaaatgaaacagcaacagccacataatttccaatccatatgatatgagcaagacatcatattacctgc |
700 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34867447 |
ccaaacatcaaatgaattgtgtgaaattgaggcaaatgaaacagcaacagccacataatttccaatccatatgatatgagcaagacatcatattacctgc |
34867546 |
T |
|
| Q |
701 |
ccaac |
705 |
Q |
| |
|
||||| |
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|
| T |
34867547 |
ccaac |
34867551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 536 - 705
Target Start/End: Original strand, 34874782 - 34874950
Alignment:
| Q |
536 |
ttgttctccccttaacaatctcaaaatcttctccatatctttttagccagtttcctatctccattccaaacatcaaatgaattgtgtgaaattgaggcaa |
635 |
Q |
| |
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||||||| |||||||| |||||||||||||| |||||||||| ||| |||||||||||||||||||||||| ||||| ||| ||||| |||| | |||| |
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| T |
34874782 |
ttgttctgcccttaactatctcaaaatcttccccatatctttc-agctagtttcctatctccattccaaacaccaaataaatggtgtgcaattaaagcaa |
34874880 |
T |
|
| Q |
636 |
atgaaacagcaacagccacataatttccaatccatatgatatgagcaagacatcatattacctgcccaac |
705 |
Q |
| |
|
||||| | ||||| |||||| ||||||| ||||| | ||||||||||||| || || ||||| ||||| |
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|
| T |
34874881 |
atgaagctgcaaccgccacagaatttcctatccaaactgtatgagcaagacaccacatgacctgtccaac |
34874950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 546 - 705
Target Start/End: Complemental strand, 38382168 - 38382010
Alignment:
| Q |
546 |
cttaacaatctcaaaatcttctccatatctttttagccagtttcctatctccattccaaacatcaaatgaattgtgtgaaattgaggcaaatgaaacagc |
645 |
Q |
| |
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|||||| ||||||||||||||||||| ||||| ||| | | |||||||||||||||| || ||||| || ||||||||| || ||| |||| | || |
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| T |
38382168 |
cttaacgatctcaaaatcttctccatgtctttg-agctaatcgcctatctccattccaagcaccaaatagatgatgtgaaattaagccaattgaagctgc |
38382070 |
T |
|
| Q |
646 |
aacagccacataatttccaatccatatgatatgagcaagacatcatattacctgcccaac |
705 |
Q |
| |
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|||||||||| ||||||||||||| || ||||||||||||| || |||||||| ||||| |
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| T |
38382069 |
aacagccacagaatttccaatccaaattgtatgagcaagacaccagattacctgaccaac |
38382010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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