View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11041_low_10 (Length: 229)
Name: NF11041_low_10
Description: NF11041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11041_low_10 |
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| [»] scaffold0417 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 19975500 - 19975312
Alignment:
| Q |
18 |
cagaccatggagttaaggttgcaaacatacacacatatagcgttaagctacctgttactcaacattaccattcatcagaccatattgatgcacatgtatt |
117 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||| |||||||| |
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| T |
19975500 |
cagaccatggagctaaggttgcaaacatacacacatatagcgttaagctacctgttactcagcattagcagtcatcagaccatattgatgcgcatgtatt |
19975401 |
T |
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| Q |
118 |
tatttctattgatacagtcccacaacatattgaaaagtctcagactatgtttcatatgacttgacataacatctctgatgagctagtta |
206 |
Q |
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| T |
19975400 |
tatttctattgatacagtcccacaacatattgaaaagtctcagactacgtttcatatgacttgacataacgtctctgatgagctagtta |
19975312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 21017333 - 21017521
Alignment:
| Q |
18 |
cagaccatggagttaaggttgcaaacatacacacatatagcgttaagctacctgttactcaacattaccattcatcagaccatattgatgcacatgtatt |
117 |
Q |
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| T |
21017333 |
cagaccatggagctaaggttgcaaacatacacacatatagcgttaagctacctgttactcagcattagcagtcatcagaccatattgatgcgcatgtatt |
21017432 |
T |
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| Q |
118 |
tatttctattgatacagtcccacaacatattgaaaagtctcagactatgtttcatatgacttgacataacatctctgatgagctagtta |
206 |
Q |
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| T |
21017433 |
tatttctattgatacagtcccacaacatattgaaaagtctcagactacgtttcatatgacttgacataacgtctctgatgagctagtta |
21017521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 19975000 - 19974806
Alignment:
| Q |
18 |
cagaccatggagttaaggttgcaaacatacacacatatagcgttaagctacctgttactcaacattaccattcatcagaccatattgatgcacatgtatt |
117 |
Q |
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| T |
19975000 |
cagaccatggagttgagttagcaaacagacacatagatagcgttaagctaccggttactcagcattagcagccaatagaccatattgatgcgcaaatatt |
19974901 |
T |
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| Q |
118 |
t------atttctattgatacagtcccacaacatattgaaaagtctcagactatgtttcatatgacttgacataacatctctgatgagctagtta |
206 |
Q |
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| T |
19974900 |
ttcttttatttctattgatacaaccccacaacatattgaaatatctcagactacatttcatatgtttttacataacatctctgatgtgctagtta |
19974806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 21017833 - 21018027
Alignment:
| Q |
18 |
cagaccatggagttaaggttgcaaacatacacacatatagcgttaagctacctgttactcaacattaccattcatcagaccatattgatgcacatgtatt |
117 |
Q |
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| T |
21017833 |
cagaccatggagttgagttagcaaacagacacatagatagcgttaagctaccggttactcagcattagcagccaatagaccatattgatgcgcaaatatt |
21017932 |
T |
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| Q |
118 |
t------atttctattgatacagtcccacaacatattgaaaagtctcagactatgtttcatatgacttgacataacatctctgatgagctagtta |
206 |
Q |
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| T |
21017933 |
ttcttttatttctattgatacaaccccacaacatattgaaatatctcagactacatttcatatgtttttacataacatctctgatgtgctagtta |
21018027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 117 - 208
Target Start/End: Complemental strand, 27860164 - 27860073
Alignment:
| Q |
117 |
ttatttctattgatacagtcccacaacatattgaaaagtctcagactatgtttcatatgacttgacataacatctctgatgagctagttatg |
208 |
Q |
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| T |
27860164 |
ttatttctattgatacaaccccgcaacatattgaaaagtttcagactttgcttcatatgtcgtcacataacgtctctaatgagctagttatg |
27860073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 8229621 - 8229667
Alignment:
| Q |
117 |
ttatttctattgatacagtcccacaacatattgaaaagtctcagact |
163 |
Q |
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|||||| ||||||||||| |||| ||||||||||||||||||||||| |
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| T |
8229621 |
ttatttatattgatacagccccataacatattgaaaagtctcagact |
8229667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0417 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0417
Description:
Target: scaffold0417; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 175
Target Start/End: Original strand, 5046 - 5104
Alignment:
| Q |
117 |
ttatttctattgatacagtcccacaacatattgaaaagtctcagactatgtttcatatg |
175 |
Q |
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| T |
5046 |
ttatttctattgatacatccccgtaacatattgaaaagtctcaaacttcgtttcatatg |
5104 |
T |
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