View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11041_low_2 (Length: 450)
Name: NF11041_low_2
Description: NF11041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11041_low_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 8 - 450
Target Start/End: Original strand, 49350289 - 49350732
Alignment:
| Q |
8 |
tagcataggtagaatacttcctccaaggttaaaacacacaagtatctgattgaactaaagatgagtgaatttgggatgtaatctttgtcctttgacattg |
107 |
Q |
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| T |
49350289 |
tagcataggtagaatacttcctccaatgttaaaacacacaagtatctgattgaactaaagatgagtgaatttgggatgtaatctttgtcctttgacattg |
49350388 |
T |
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| Q |
108 |
gttctttaagtgcctcagcttctccatcctttatggttcatgaaggatgttgggttgattttgtaaatggtcatttggattttctatgcggcctaaattc |
207 |
Q |
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| T |
49350389 |
gttctttaagtgcctcagcttctgcatcctttatggttcatgaaggatgttgggttgattttgtaaatggtcatttggattttctatgcggcctaaattc |
49350488 |
T |
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| Q |
208 |
tcagagtcccccattttcattaatgcaa-tccattaatgtttaattttatattagagtaatttacttgacttcattctctgtataaaaatataaccctaa |
306 |
Q |
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| T |
49350489 |
tcagagtcccccattttcattaatgcaactccattaatgtttaattttatattagagtaatttacttgacttcattctctgtataaaaatataaccctaa |
49350588 |
T |
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| Q |
307 |
acagttcatgaatttgctttggtaactaatcttcagtgctaaaaaattttagtgttgttacaaaaatattcacttcattccctttatggaaaatgtccac |
406 |
Q |
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| T |
49350589 |
acagttcatgaatttgctctggtaactaatcttcagtgctaaatttttttagtgttgttacaaaaatattcacttcattccctttatggaaaatgtccac |
49350688 |
T |
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| Q |
407 |
ttttgatgctgatggtgctttttaatgcccttgctgatctttgc |
450 |
Q |
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| T |
49350689 |
ttttgatgctgatggtgcttttaaatgcccttgctgatctttgc |
49350732 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 139
Target Start/End: Original strand, 36663734 - 36663822
Alignment:
| Q |
44 |
cacaagtatctgattgaactaaagatgagtgaatttgggatgtaatctttgtcctttgacattggttctttaagtgcctcagcttctccatccttt |
139 |
Q |
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||||||||| ||||||||||||||| || |||| ||| ||| ||||||||| |||| |||||||||||||||||||||||| | |||||| |
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| T |
36663734 |
cacaagtatttgattgaactaaagaagactgaagttgtgatataatctttg-------acatgggttctttaagtgcctcagcttctgcttccttt |
36663822 |
T |
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