View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11041_low_5 (Length: 270)
Name: NF11041_low_5
Description: NF11041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11041_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 35354888 - 35355149
Alignment:
| Q |
1 |
tataccaatgttgacaacattgttcatcaaaaaatcttctgtggctgcactatttggctatatattttacattgatttcatgaacaacatgggtcattgc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||| ||||||||||||||||||||||||||||||| |
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| T |
35354888 |
tataccaatgttgacaacattgttcatcaaaaaatcttctgtggctgcactatatggctatgtctttttcattgatttcatgaacaacatgggtcattgc |
35354987 |
T |
|
| Q |
101 |
aactttgagttctttcctaagaaactcctctcttactttcccattttgaagtatctctcatacacaccatcgtaagttcaacaatgctaatgagcttcct |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35354988 |
aactttgagttcattcctaagaaactcctctcttactttcccattttgaagtatctctcatacacaccatcgtaagttcaacaatgctaacgagcttcct |
35355087 |
T |
|
| Q |
201 |
aatttctagtgacattccatatgctaattgtttattttgtccgtgatatatttccacaggtt |
262 |
Q |
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|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
35355088 |
aatttctagtcacattccatatgctaattgtttattttctccgtgatatatttccacaggtt |
35355149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 5 - 178
Target Start/End: Original strand, 35380898 - 35381071
Alignment:
| Q |
5 |
ccaatgttgacaacattgttcatcaaaaaatcttctgtggctgcactatttggctatatattttacattgatttcatgaacaacatgggtcattgcaact |
104 |
Q |
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|||||||||||||||||||||||||| |||||||| ||||||||| | | ||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35380898 |
ccaatgttgacaacattgttcatcaataaatcttccgtggctgcattgtatggttatatattttacattgatttcatgaacaatatgggtcattgcaact |
35380997 |
T |
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| Q |
105 |
ttgagttctttcctaagaaactcctctcttactttcccattttgaagtatctctcatacacaccatcgtaagtt |
178 |
Q |
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| T |
35380998 |
ttgagttctttcctaagaaactcctctcttactttcccattttaaagtatctctcatacacaccatcgtaagtt |
35381071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 35370332 - 35370509
Alignment:
| Q |
1 |
tataccaatgttgacaacattgttcatcaaaaaatcttctgtggctgcactatttggctatatattttacattgatttcatgaacaacatgggtcattgc |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||| | |||| |||||||||||||||||| |||||||||||| |
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| T |
35370332 |
tataccaatgttaacaacattgttcatcaaaaaatcatctgtggctgcactatatggctatgtctttttcattgatttcatgaacaatatgggtcattgc |
35370431 |
T |
|
| Q |
101 |
aactttgagttctttcctaagaaactcctctcttactttcccattttgaagtatctctcatacacaccatcgtaagtt |
178 |
Q |
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| T |
35370432 |
aactttgagttctttcctaagaagctcttctcatactttccccaattgaagtatctctcttacacaccatcgtaagtt |
35370509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 19684538 - 19684715
Alignment:
| Q |
1 |
tataccaatgttgacaacattgttcatcaaaaaatcttctgtggctgcactatttggctatatattttacattgatttcatgaacaacatgggtcattgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||| |||| | | ||| ||||| |||||||| ||||| ||||||||||||||||||||| |
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| T |
19684538 |
tataccaatgttgacaacattgttcatgaaaaaatcgagtgtggttgcattgtatggttatatcttttacatcgattttatgaacaacatgggtcattgc |
19684637 |
T |
|
| Q |
101 |
aactttgagttctttcctaagaaactcctctcttactttcccattttgaagtatctctcatacacaccatcgtaagtt |
178 |
Q |
| |
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|| |||||||||||||||||||||||| |||| ||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
19684638 |
aattttgagttctttcctaagaaactcttctcctactttccccaattgaagtatctcacatacacaccatcgtaagtt |
19684715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 59 - 178
Target Start/End: Complemental strand, 19630230 - 19630111
Alignment:
| Q |
59 |
tatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttcccattttgaagtatctct |
158 |
Q |
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||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||| | ||||||||||||| |
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| T |
19630230 |
tatatcttttacatcgattttatgaacaacatgggtcattgcaattttgagttctttcctaagaaactcttctcctactttcccctattgaagtatctct |
19630131 |
T |
|
| Q |
159 |
catacacaccatcgtaagtt |
178 |
Q |
| |
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| T |
19630130 |
cgtacacaccatcgtaagtt |
19630111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 2251396 - 2251453
Alignment:
| Q |
67 |
ttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaa |
124 |
Q |
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|
|||||||||||||||||| || ||||||| || || ||||||||| ||||||||||| |
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| T |
2251396 |
ttacattgatttcatgaataatttgggtcactgtaattttgagttcattcctaagaaa |
2251453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 2256801 - 2256744
Alignment:
| Q |
67 |
ttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaa |
124 |
Q |
| |
|
|||||||||||||||||| || ||||||| || || ||||||||| ||||||||||| |
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|
| T |
2256801 |
ttacattgatttcatgaataatttgggtcactgtaattttgagttcattcctaagaaa |
2256744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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