View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11041_low_7 (Length: 243)
Name: NF11041_low_7
Description: NF11041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11041_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 57 - 225
Target Start/End: Original strand, 39984108 - 39984276
Alignment:
| Q |
57 |
gtctgtgtgaattaaacatatgcaattcaatgaaagagtaaagtaattcagtttaagtgcttacaagtaattgaacattgacaaccctacaaaagatttg |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39984108 |
gtctgtgtgaattaaacatatgcaattcaatggaagagtaaagtaattcagtttaagtgcttacaagtaattgaacattgacaaccctacaaagtatttg |
39984207 |
T |
|
| Q |
157 |
tggttgaagaccatatgttggaatttccaatgaagaaaagagagacaaagatgcaacttgttccaaatg |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39984208 |
tggttgaagaccatatgttggaatttccaatgaagaaaagagagacaaagatgcaacttgttccaaatg |
39984276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University