View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11041_low_9 (Length: 240)
Name: NF11041_low_9
Description: NF11041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11041_low_9 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 10037276 - 10037496
Alignment:
| Q |
18 |
cattcgatactcgggagagctgttgttgttcatgctgatcctgatgatcttggaagaggtaagaatgtaaatgtttggaccgagaatcaatgaacttgtt |
117 |
Q |
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| T |
10037276 |
cattccatactcggaagggctgtcgttgttcatgccgatcctgatgatcttggaagaggtaa-aatttaatt-tttgaaccaagaatcaatgaacttgtt |
10037373 |
T |
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| Q |
118 |
taattaggcttcctcatttttccactttgaaacgtagcttctgttttcctctattcttatagtttttatacagtaactcattggagtagtttttctatga |
217 |
Q |
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| T |
10037374 |
tgattaggcttcctcttttttccactttgaaacgtagattctgttttcctctattcttatagtttttatacagtaactcattggagtagtttttctatga |
10037473 |
T |
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| Q |
218 |
taaagatgtactgaattgaattt |
240 |
Q |
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||||| | |||| |||||||||| |
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| T |
10037474 |
taaagctatactcaattgaattt |
10037496 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 70
Target Start/End: Original strand, 47132275 - 47132309
Alignment:
| Q |
36 |
gctgttgttgttcatgctgatcctgatgatcttgg |
70 |
Q |
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| T |
47132275 |
gctgttgttgttcatgctgatcctgatgatcttgg |
47132309 |
T |
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