View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11042_high_1 (Length: 374)
Name: NF11042_high_1
Description: NF11042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11042_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 220 - 345
Target Start/End: Original strand, 55319 - 55444
Alignment:
| Q |
220 |
attggctaattgaagcatcctctacagtttttcaactgtctagcaaaaaccaatctagaattgggaacctaaaatacgtatggaagaaccttcaggtgga |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
55319 |
attggctaattgaagcatcctctacagtttttcaactgtctagcaaaaaccaatctagaattgggaacctaaaatacctatggaagaaccttcaggtgga |
55418 |
T |
|
| Q |
320 |
catccttcaacttaagcattctttgt |
345 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
55419 |
catccttcaacttaagcattctttgt |
55444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 55268 - 55322
Alignment:
| Q |
2 |
attatatttaatagaaattgtggtagtagtaaacacaaatgttatagaactattg |
56 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
55268 |
attatatttaatagaaattgtggtagtagcaaacacaaatgttatagaactattg |
55322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 147 - 345
Target Start/End: Original strand, 33754949 - 33755139
Alignment:
| Q |
147 |
taatggatttgcagcttatgcgtcctaaaaaggttacattctacaaaatagtttttgtaagaaagttaaaatcattggctaattgaagcatcctctacag |
246 |
Q |
| |
|
||||| |||||||||||||||| |||||||||| |||| ||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
33754949 |
taatgtatttgcagcttatgcgccctaaaaaggctacaacttaccgactagtttttgtaagaaagttaaaatctttggctaattgaagcatcctctacag |
33755048 |
T |
|
| Q |
247 |
tttttcaactgtctagcaaaaaccaatctagaattgggaacctaaaatacgtatggaagaaccttcaggtggacatccttcaacttaagcattctttgt |
345 |
Q |
| |
|
|||||||| || ||||||| ||| ||| ||| ||||||| |||||| |||||||||||||||| ||||||||||||| | ||||||| |
|
|
| T |
33755049 |
tttttcaaatgagcgacaaaaactaatatag--------acccaaaataccgatggaacaaccttcaggtggacacccttcaacttaagtactctttgt |
33755139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University