View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11042_low_1 (Length: 351)
Name: NF11042_low_1
Description: NF11042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11042_low_1 |
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| [»] scaffold0496 (1 HSPs) |
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| [»] scaffold0078 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 15 - 336
Target Start/End: Complemental strand, 9196346 - 9196036
Alignment:
| Q |
15 |
cctgtggcttggatatttgcagaacatggatttaaactgttcccatgcttcatatattgtctcgctcgaaccttgagtaaaaacagcgattggcgtcttt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||| |||||||||||||| |
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| T |
9196346 |
cctgtggcttggatatttgcagaacatggatttaaactgttcccatgcttcatataatgtctcactagaaccttgagtaaaaacaacgattggcgtcttt |
9196247 |
T |
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| Q |
115 |
gcatcttgaattctactatgaggaaagaatcgtttgatgaacttgtcctccaaagtgttctaatctgtctgagttgtggatggttggtccaaataccaat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
9196246 |
gcatcttgaattctactatgaggaaagaatcgtttgatgaacttgtcctccaaagtgttctaatttgtctgagttgtgg-----------aaataccaat |
9196158 |
T |
|
| Q |
215 |
ctttggctcgtccaatgagtgaatgaggaaataaccttaggtataggttttcatctttgctgttcgacgctcccaggctttcggcattttctcagaactt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||| |
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| T |
9196157 |
ctttggctcgtccaatgagtgaatgaggaaataaccttaggtataggttttcatctttgctgttcgatgctcccaggctttcggcatttttgcataactt |
9196058 |
T |
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| Q |
315 |
tgtcaaatggttgatggaatct |
336 |
Q |
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||||| ||||||||||| |||| |
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| T |
9196057 |
tgtcagatggttgatgggatct |
9196036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 133 - 266
Target Start/End: Original strand, 15307413 - 15307546
Alignment:
| Q |
133 |
tgaggaaagaatcgtttgatgaacttgtcctccaaagtgttctaatctgtctgagttgtggatggttggtccaaataccaatctttggctcgtccaatga |
232 |
Q |
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| T |
15307413 |
tgaggaaaaaattatttgatgaacttgtcctccaaagtgttctgatttgttagaattgtgaatgattggtctaagtaccaatctttggttcgttcgatga |
15307512 |
T |
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| Q |
233 |
gtgaatgaggaaataaccttaggtataggttttc |
266 |
Q |
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| T |
15307513 |
gggattgaggaaataaccttaggtataggttttc |
15307546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 122 - 296
Target Start/End: Complemental strand, 14527924 - 14527750
Alignment:
| Q |
122 |
gaattctactatgaggaaagaatcgtttgatgaacttgtcctccaaagtgttctaatctgtctgagttgtggatggttggtccaaataccaatctttggc |
221 |
Q |
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| T |
14527924 |
gaattctactatgcgaaaagaaacttttagagaacttgttctccagagtgtccaaatttgtcagagttatggttggtttttccatataacaacctttggc |
14527825 |
T |
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| Q |
222 |
tcgtccaatgagtgaatgaggaaataaccttaggtataggttttcatctttgctgttcgacgctcccaggctttc |
296 |
Q |
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| T |
14527824 |
acgtccagtgagggagtgaggaaataaccttatgtataggttttcctcttcgttgtcctacgctcctgggctttc |
14527750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 232
Target Start/End: Complemental strand, 19624970 - 19624859
Alignment:
| Q |
121 |
tgaattctactatgaggaaagaatcgtttgatgaacttgtcctccaaagtgttctaatctgtctgagttgtggatggttggtccaaataccaatctttgg |
220 |
Q |
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|||||||||||| | |||||||||| |||||||||||||||||| | ||||||||| | | || ||||| | | |||||| |||| |||| |||||||| |
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| T |
19624970 |
tgaattctactacgcggaaagaatcttttgatgaacttgtcctctagagtgttctagtttttcagagttattgttggttgatccatatactaatctttga |
19624871 |
T |
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| Q |
221 |
ctcgtccaatga |
232 |
Q |
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| T |
19624870 |
cacgttcaatga |
19624859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 127 - 271
Target Start/End: Complemental strand, 22108244 - 22108101
Alignment:
| Q |
127 |
ctactatgaggaaagaatcgtttgatgaacttgtcctccaaagtgttctaatctgtctgagttgtggatggttggtccaaataccaatctttggctcgtc |
226 |
Q |
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||||| ||||||||||||| |||||||||||||||||||||||| ||| ||| || |||| ||||||||||||| || ||||||| ||||||| ||| |
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| T |
22108244 |
ctactttgaggaaagaatcatttgatgaacttgtcctccaaagttttccaattcgttagagtattggatggttggtctaagtaccaatatttggcttgtc |
22108145 |
T |
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| Q |
227 |
caatgagtgaatgaggaaataaccttaggtataggttttcatctt |
271 |
Q |
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| T |
22108144 |
cga-aagggaatgaggaaataaccttaggtaaaggttttcctctt |
22108101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0496 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0496
Description:
Target: scaffold0496; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 113 - 200
Target Start/End: Complemental strand, 8676 - 8589
Alignment:
| Q |
113 |
ttgcatcttgaattctactatgaggaaagaatcgtttgatgaacttgtcctccaaagtgttctaatctgtctgagttgtggatggttg |
200 |
Q |
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||||||||||||||||||| || ||||||||| ||||||||||||| |||||||||||||| ||| |||| |||||||||||||||| |
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| T |
8676 |
ttgcatcttgaattctactttggggaaagaatggtttgatgaacttatcctccaaagtgttacaatttgtcagagttgtggatggttg |
8589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 305
Target Start/End: Original strand, 15143 - 15365
Alignment:
| Q |
83 |
aaccttgagtaaaaacagcgattggcgtctttgcatcttgaattctactatgaggaaagaatcgtttgatgaacttgtcctccaaagtgttctaatctgt |
182 |
Q |
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||||||| || |||||| |||||| ||||| ||||| |||| | |||||| || ||||||| ||||||||| || | ||||| |||||| ||| ||| |
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| T |
15143 |
aaccttgggtgaaaacaacgattgttgtcttagcatcatgaaatttactatacgggaagaatcttttgatgaattttttgtccaacgtgttccaatttgt |
15242 |
T |
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| Q |
183 |
ctgagttgtggatggttggtccaaataccaatctttggctcgtccaatgagtgaatgaggaaataaccttaggtataggttttcatctttgctgttcgac |
282 |
Q |
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| T |
15243 |
caatgttgtttctgattggtccagataccaatctttggcatgtccaatgtgagaaagatggaatagccttaggtatagattctcttcttcgatgtccaac |
15342 |
T |
|
| Q |
283 |
gctcccaggctttcggcattttc |
305 |
Q |
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||||| |||||||||||| |||| |
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| T |
15343 |
gctcctaggctttcggcaatttc |
15365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 251
Target Start/End: Original strand, 16549852 - 16550021
Alignment:
| Q |
82 |
gaaccttgagtaaaaacagcgattggcgtctttgcatcttgaattctactatgaggaaagaatcgtttgatgaacttgtcctccaaagtgttctaatctg |
181 |
Q |
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||||||| |||||||||| |||||| || || ||||| |||||||| ||| | ||||| |||| |||||| || || || |||||||||||| || || |
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| T |
16549852 |
gaaccttaagtaaaaacaatgattggtgtattagcatcatgaattctgctacgtggaaataatcttttgataaatttatcttccaaagtgttccaacttg |
16549951 |
T |
|
| Q |
182 |
tctgagttgtggatggttggtccaaataccaatctttggctcgtccaatgagtgaatgaggaaataacct |
251 |
Q |
| |
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|| || ||| | | |||| ||||| |||| |||||||| | | ||||||| |||||||| |||||||| |
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| T |
16549952 |
tcaaagatgttgtttgttgatccaagtaccggtctttggcgcattcaatgagagaatgagggaataacct |
16550021 |
T |
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