View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11043_high_12 (Length: 397)
Name: NF11043_high_12
Description: NF11043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11043_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 13 - 391
Target Start/End: Original strand, 3068250 - 3068630
Alignment:
| Q |
13 |
ataaatctccatgattagatacaagttctaaat-aaaatcagaagttattgtttttatgcatatttaaatgatgagtttggtaatgttaaacatccattt |
111 |
Q |
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| T |
3068250 |
ataaatctccattatcagatacaagttctaagtgaaaatcagaagttattgtttttatgcatatttaaatgatgagtttggtaatgttaaacatccattt |
3068349 |
T |
|
| Q |
112 |
gaatttaagataacactccaaattaatgcataagaataaagtttttccatctcttttaaatctttgagctttcatca-tactagtattatttgagagaga |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||| |
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| T |
3068350 |
gaatttaagataacactccaaattaatgcataagaataaagtttttccatctcttttaaatctttgagctttcatcactagtattattatttgagagaga |
3068449 |
T |
|
| Q |
211 |
tcttgcgctttcttttgagaaacatgaattttgtaatttcccacaattttagggaaggttagcaattggacgacaagctggccaatttagggttatgtgt |
310 |
Q |
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| T |
3068450 |
tcttgagctttcttttgagaaacatgaattttgtaatttcccacaattttagggaaggttaccaattggacgacaagctggccaatttagggttatgtgt |
3068549 |
T |
|
| Q |
311 |
ccaaaactctttttggtttaatgaaattcatttgattattcaccaagattaacaataaggaaaggttttggttcttctctc |
391 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3068550 |
ccaatactctttttggtttaatgaaattcatttgattattcaccaagattaacaataaggaaaggttttggttcttgtctc |
3068630 |
T |
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