View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11043_high_13 (Length: 389)
Name: NF11043_high_13
Description: NF11043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11043_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 8355195 - 8354848
Alignment:
| Q |
1 |
agacaatcttaattgttcgtcttgattctaaatttaagttttaatttactttcaatttgtaaaccaacttggaatgcaaacccctgaaatttatatttgt |
100 |
Q |
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| T |
8355195 |
agacaatcttaattgttcgtcttgattctaaatttaagttttaatttactttcaatttgtaaaccaacttggaatgcaaacccctgaaatttatatttat |
8355096 |
T |
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| Q |
101 |
atgacttataaaacatataaaatcatcctttttgagt------------------actataagaaagggaccaaaaccgatagtttttaaaatgaatgac |
182 |
Q |
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| T |
8355095 |
atgacttataaaacatataaaatcatcctttttgagtttaaaaaaaaataaaaatactataagaaagggaccaaaaccgatagtttttaaaatgaatgac |
8354996 |
T |
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| Q |
183 |
caagtactccattattaaaggagcaatccgagta--attca-----aggataggatagataagtaatcttattaaaatagatagactagggtgtattttt |
275 |
Q |
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| T |
8354995 |
caagtactccattattaaaggaccaatccgagtaatattcaaggataggataggatagataagtaatcttattaaaatagatagactagggtgtattttt |
8354896 |
T |
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| Q |
276 |
gaactgagtctcttacaacaacaaaaacaaaacagttatccatgatatat |
325 |
Q |
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| T |
8354895 |
gaactgag--tcttacaacaacaaaaacaaaacagttatccatgatatat |
8354848 |
T |
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