View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11043_high_16 (Length: 340)
Name: NF11043_high_16
Description: NF11043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11043_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 4 - 324
Target Start/End: Original strand, 11201130 - 11201450
Alignment:
| Q |
4 |
acaaaacatatttgaggtttactacatcaggatctaaaatgtctaagcactttgattgtgcagataatccttaagtcttctactttatttgcacagttgg |
103 |
Q |
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| T |
11201130 |
acaaaacatatttgaggtttactacatcaggatctaaaatgtctaagcactttgattgtgcagataatccttaagtcttctactttatttgcacagttgg |
11201229 |
T |
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| Q |
104 |
aagcaacatataaatgagccttcatatacattatgcgcagtagaaataaatcaaaagtatagcagatctttcaaaacacaaaaccataaccgaaacagtc |
203 |
Q |
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| T |
11201230 |
aagcaacatataaatgagccttcatatacattatgcgcagtagaaataaatcaaaagtatagcagatctttcaaaacacaaaaccataaccgaaacagtc |
11201329 |
T |
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| Q |
204 |
attaacggaaacaaaaggacaacggacttggacatcagcaacacaaccgaaactccataatctttcaagagacttcactcataggcttcaaccttaacat |
303 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11201330 |
attaacggaaacaaaaggacaactgacttggacatcagcaacacaaccgaaactccataatctttcaagagacttcactcataggcttcaaccttaacat |
11201429 |
T |
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| Q |
304 |
gcaccagcttaggctcttttg |
324 |
Q |
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||||||||||||||||||||| |
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| T |
11201430 |
gcaccagcttaggctcttttg |
11201450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 82 - 324
Target Start/End: Original strand, 11162433 - 11162675
Alignment:
| Q |
82 |
tctactttatttgcacagttggaagcaacatataaatgagccttcatatacattatgcgcagtagaaataaatcaaaagtatagcagatctttcaaaaca |
181 |
Q |
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| T |
11162433 |
tctactttatttgcacagttggaagcaacatataaatgagccttcatatacattatgcgcagtagaaataaatcaaaagtatagcagatctttcaaaaca |
11162532 |
T |
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| Q |
182 |
caaaaccataaccgaaacagtcattaacggaaacaaaaggacaacggacttggacatcagcaacacaaccgaaactccataatctttcaagagacttcac |
281 |
Q |
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| T |
11162533 |
caaaaccataaccgaaacagtcattaacggaaacaaaaggacaactgacttggacatcagcaacacaaccgaaactccataatctttcaagagacttcac |
11162632 |
T |
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| Q |
282 |
tcataggcttcaaccttaacatgcaccagcttaggctcttttg |
324 |
Q |
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| T |
11162633 |
tcataggcttcaaccttaacatgcaccagcttaggctcttttg |
11162675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 39
Target Start/End: Original strand, 11162401 - 11162436
Alignment:
| Q |
4 |
acaaaacatatttgaggtttactacatcaggatcta |
39 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
11162401 |
acaaaacatatttgaggtttactacatcaggatcta |
11162436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 249069 - 248995
Alignment:
| Q |
4 |
acaaaacatatttgaggtttactacatcaggatctaaaatgtctaagcactttgattgtgcagataatccttaag |
78 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
249069 |
acaaaacatatttgaggtttactacctcaggatctaaaatgtctaagcactttgattgtgcagataatccttaag |
248995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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