View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11043_high_18 (Length: 304)

Name: NF11043_high_18
Description: NF11043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11043_high_18
NF11043_high_18
[»] chr2 (1 HSPs)
chr2 (233-304)||(32277922-32277993)
[»] chr5 (1 HSPs)
chr5 (27-66)||(12873724-12873763)
[»] chr6 (1 HSPs)
chr6 (27-65)||(27770875-27770913)
[»] chr7 (1 HSPs)
chr7 (112-173)||(13765127-13765188)
[»] chr4 (1 HSPs)
chr4 (201-234)||(14863762-14863795)


Alignment Details
Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 233 - 304
Target Start/End: Complemental strand, 32277993 - 32277922
Alignment:
Q  233 aaccaaagttgattacaaaactgacagagttaaaatttgcagaaacagtgacggtatgaaaataggaccatt 304  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||  ||||||||| |||||||||||||    
T  32277993 aaccaaagttgattactaaattgacagagttaaaatttgcagaaacaacgacggtatggaaataggaccatt 32277922  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 12873763 - 12873724
Alignment:
Q  27 atagtatcaatatcaaaatataatcataaccatatggtta 66  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  12873763 atagtatcaatatcaaaatataatcataaccataaggtta 12873724  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 27770913 - 27770875
Alignment:
Q  27 atagtatcaatatcaaaatataatcataaccatatggtt 65  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  27770913 atagtatcaatatcaaaatataatcataaccataaggtt 27770875  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 13765188 - 13765127
Alignment:
Q  112 atatagcagcagcccgtacacacg-ccataatcctaatatagttcatacaaaatgaatatttt 173  Q
    |||||||||||||||||||||||| ||| |||||| ||  ||||||||| |||||||||||||    
T  13765188 atatagcagcagcccgtacacacgaccacaatcctcatgcagttcatac-aaatgaatatttt 13765127  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 234
Target Start/End: Original strand, 14863762 - 14863795
Alignment:
Q  201 cgtattactccattatagccaaaaatcaaatcaa 234  Q
    ||||| ||||||||||||||||||||||||||||    
T  14863762 cgtatgactccattatagccaaaaatcaaatcaa 14863795  T

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