View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11043_high_2 (Length: 645)

Name: NF11043_high_2
Description: NF11043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11043_high_2
NF11043_high_2
[»] chr2 (30 HSPs)
chr2 (13-632)||(2119408-2120029)
chr2 (223-422)||(31500908-31501107)
chr2 (224-497)||(19508660-19508946)
chr2 (20-497)||(26393703-26394159)
chr2 (22-189)||(2777101-2777268)
chr2 (15-338)||(40612699-40613026)
chr2 (15-146)||(4174723-4174854)
chr2 (433-583)||(28654619-28654766)
chr2 (15-190)||(31501136-31501311)
chr2 (15-171)||(34458462-34458618)
chr2 (210-330)||(15738061-15738183)
chr2 (505-595)||(31500780-31500872)
chr2 (59-190)||(19508503-19508633)
chr2 (58-183)||(15738222-15738347)
chr2 (57-190)||(21833472-21833605)
chr2 (224-316)||(26172856-26172949)
chr2 (431-496)||(13331805-13331870)
chr2 (215-309)||(4174927-4175022)
chr2 (15-190)||(29902197-29902372)
chr2 (54-172)||(20725488-20725606)
chr2 (225-336)||(20725658-20725770)
chr2 (457-497)||(37313308-37313348)
chr2 (15-69)||(694860-694914)
chr2 (523-575)||(19508995-19509046)
chr2 (445-497)||(31173478-31173530)
chr2 (459-496)||(19507892-19507929)
chr2 (210-251)||(29902397-29902438)
chr2 (462-498)||(33405719-33405755)
chr2 (523-575)||(34456957-34457009)
chr2 (459-495)||(37310998-37311034)
[»] chr1 (24 HSPs)
chr1 (237-581)||(27105643-27105985)
chr1 (224-595)||(31387675-31388032)
chr1 (224-586)||(4911565-4911910)
chr1 (224-534)||(42463304-42463597)
chr1 (13-190)||(50914824-50915001)
chr1 (20-190)||(18242906-18243076)
chr1 (15-190)||(31387476-31387651)
chr1 (224-359)||(46192131-46192267)
chr1 (15-190)||(4911935-4912110)
chr1 (15-309)||(15291467-15291763)
chr1 (20-190)||(27106025-27106195)
chr1 (15-189)||(46192293-46192467)
chr1 (15-181)||(42463631-42463797)
chr1 (21-134)||(42055805-42055918)
chr1 (369-494)||(22093385-22093510)
chr1 (457-576)||(18239472-18239588)
chr1 (523-586)||(33216345-33216408)
chr1 (431-497)||(36354643-36354709)
chr1 (461-497)||(39063242-39063278)
chr1 (431-497)||(7407377-7407444)
chr1 (448-497)||(48138751-48138801)
chr1 (541-595)||(42463201-42463257)
chr1 (431-498)||(28865807-28865875)
chr1 (286-314)||(50915091-50915119)
[»] chr5 (18 HSPs)
chr5 (224-497)||(10825429-10825688)
chr5 (13-498)||(7262881-7263337)
chr5 (15-190)||(37980261-37980435)
chr5 (15-160)||(10825744-10825889)
chr5 (14-150)||(24169491-24169627)
chr5 (15-148)||(19876528-19876661)
chr5 (57-160)||(23067167-23067270)
chr5 (465-581)||(34394133-34394246)
chr5 (215-309)||(23067328-23067423)
chr5 (464-596)||(10825305-10825436)
chr5 (215-309)||(19876732-19876827)
chr5 (250-314)||(37980146-37980211)
chr5 (457-497)||(1696624-1696664)
chr5 (506-579)||(42448951-42449025)
chr5 (457-498)||(36348662-36348703)
chr5 (431-494)||(6556637-6556701)
chr5 (210-242)||(24169673-24169705)
chr5 (286-314)||(24169720-24169748)
[»] chr6 (14 HSPs)
chr6 (223-581)||(5620468-5620819)
chr6 (15-317)||(33523383-33523686)
chr6 (13-317)||(19268624-19268931)
chr6 (13-190)||(5620264-5620441)
chr6 (210-335)||(2946273-2946400)
chr6 (15-73)||(2946183-2946241)
chr6 (13-190)||(23058647-23058827)
chr6 (210-336)||(23058854-23058979)
chr6 (13-124)||(33522380-33522491)
chr6 (462-498)||(29266932-29266968)
chr6 (455-497)||(22868342-22868385)
chr6 (265-307)||(33522261-33522304)
chr6 (369-397)||(2946413-2946441)
chr6 (462-498)||(17126976-17127012)
[»] chr8 (24 HSPs)
chr8 (224-535)||(44115599-44115893)
chr8 (15-190)||(20477618-20477793)
chr8 (224-586)||(41270009-41270371)
chr8 (15-190)||(41269807-41269982)
chr8 (13-189)||(42095767-42095943)
chr8 (15-153)||(44115956-44116094)
chr8 (15-157)||(8317074-8317216)
chr8 (215-338)||(42095617-42095741)
chr8 (210-330)||(18701017-18701139)
chr8 (369-496)||(42095480-42095607)
chr8 (58-183)||(18701177-18701302)
chr8 (444-500)||(45120654-45120710)
chr8 (469-576)||(20495488-20495591)
chr8 (445-497)||(23231232-23231284)
chr8 (523-575)||(233951-234003)
chr8 (523-575)||(710362-710414)
chr8 (523-575)||(747574-747626)
chr8 (523-575)||(871469-871521)
chr8 (541-581)||(40494103-40494143)
chr8 (538-596)||(44509972-44510029)
chr8 (250-314)||(8316554-8316619)
chr8 (250-314)||(20477498-20477563)
chr8 (539-601)||(42095405-42095469)
chr8 (431-498)||(26702796-26702864)
[»] chr3 (35 HSPs)
chr3 (224-597)||(45034820-45035190)
chr3 (13-190)||(55150781-55150958)
chr3 (237-402)||(48164965-48165131)
chr3 (224-400)||(18942795-18942972)
chr3 (228-411)||(177607-177792)
chr3 (224-363)||(23585220-23585358)
chr3 (224-363)||(23600043-23600181)
chr3 (15-160)||(52561036-52561181)
chr3 (13-189)||(177823-177999)
chr3 (13-190)||(48164751-48164928)
chr3 (224-339)||(18911992-18912108)
chr3 (20-190)||(18942999-18943169)
chr3 (20-190)||(45034625-45034795)
chr3 (98-190)||(10809-10901)
chr3 (432-595)||(23585394-23585555)
chr3 (432-595)||(23600217-23600378)
chr3 (15-104)||(9135-9224)
chr3 (211-309)||(52561236-52561335)
chr3 (15-100)||(18908147-18908232)
chr3 (54-190)||(13825446-13825582)
chr3 (224-316)||(54315205-54315298)
chr3 (109-190)||(18911884-18911965)
chr3 (444-497)||(48165159-48165212)
chr3 (539-604)||(18912281-18912348)
chr3 (250-332)||(13825300-13825380)
chr3 (450-497)||(18942697-18942744)
chr3 (465-586)||(48165206-48165324)
chr3 (517-601)||(177428-177514)
chr3 (523-586)||(52560293-52560356)
chr3 (109-160)||(54315313-54315364)
chr3 (523-576)||(42989824-42989877)
chr3 (541-599)||(44846952-44847012)
chr3 (457-497)||(44929361-44929402)
chr3 (210-242)||(55150980-55151012)
chr3 (523-596)||(55151333-55151408)
[»] chr7 (26 HSPs)
chr7 (226-595)||(42014287-42014656)
chr7 (228-400)||(46526214-46526387)
chr7 (15-190)||(10554556-10554731)
chr7 (15-190)||(46526416-46526591)
chr7 (224-400)||(6272649-6272826)
chr7 (15-190)||(31593767-31593941)
chr7 (15-306)||(41964278-41964570)
chr7 (15-160)||(6272884-6273029)
chr7 (13-190)||(42014081-42014258)
chr7 (215-581)||(45075224-45075569)
chr7 (210-338)||(45415222-45415352)
chr7 (210-315)||(11381633-11381739)
chr7 (457-574)||(20876274-20876388)
chr7 (53-152)||(45075611-45075710)
chr7 (448-595)||(6272448-6272593)
chr7 (210-315)||(11405038-11405138)
chr7 (457-574)||(27030551-27030662)
chr7 (540-581)||(46526067-46526108)
chr7 (431-498)||(1298984-1299052)
chr7 (523-575)||(6322581-6322633)
chr7 (457-570)||(42026944-42027054)
chr7 (500-574)||(20708230-20708304)
chr7 (21-190)||(3939882-3940051)
chr7 (210-242)||(10554752-10554784)
chr7 (210-242)||(31593961-31593993)
chr7 (523-596)||(47317790-47317865)
[»] chr4 (9 HSPs)
chr4 (13-494)||(12024601-12025061)
chr4 (15-182)||(54602557-54602724)
chr4 (15-190)||(39388811-39388986)
chr4 (215-309)||(39388686-39388781)
chr4 (224-311)||(54602432-54602521)
chr4 (20-141)||(16347123-16347244)
chr4 (431-497)||(1593742-1593808)
chr4 (461-497)||(10311505-10311541)
chr4 (457-497)||(55741407-55741447)
[»] scaffold1043 (3 HSPs)
scaffold1043 (210-477)||(2666-2936)
scaffold1043 (13-159)||(2997-3143)
scaffold1043 (523-595)||(2604-2678)
[»] scaffold0688 (2 HSPs)
scaffold0688 (72-190)||(5433-5551)
scaffold0688 (286-314)||(5636-5664)
[»] scaffold0079 (1 HSPs)
scaffold0079 (20-141)||(45617-45738)
[»] scaffold0097 (2 HSPs)
scaffold0097 (54-172)||(29317-29435)
scaffold0097 (225-336)||(29487-29599)
[»] scaffold0013 (2 HSPs)
scaffold0013 (210-332)||(62607-62725)
scaffold0013 (54-190)||(62744-62880)
[»] scaffold0146 (2 HSPs)
scaffold0146 (461-497)||(24528-24564)
scaffold0146 (523-575)||(32332-32384)
[»] scaffold0184 (2 HSPs)
scaffold0184 (457-487)||(28597-28627)
scaffold0184 (539-575)||(28671-28707)
[»] scaffold0078 (2 HSPs)
scaffold0078 (457-487)||(44217-44247)
scaffold0078 (539-575)||(44137-44173)
[»] scaffold0039 (1 HSPs)
scaffold0039 (463-505)||(106850-106892)
[»] scaffold0251 (1 HSPs)
scaffold0251 (457-494)||(2014-2051)


Alignment Details
Target: chr2 (Bit Score: 446; Significance: 0; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 13 - 632
Target Start/End: Complemental strand, 2120029 - 2119408
Alignment:
Q  13 gagatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcg 112  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2120029 gagatggggtgcatatagttgatggtattgtggccagacaagccgagatgactaaagaggagattgtccaggaggtgatgcggatagctagtactagtcg 2119930  T
Q  113 cgctgcccttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgattattattaggnnnnnnnnnnnnnnnnnnngac 212  Q
    || |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||                   |||    
T  2119929 cgttgcccttacttatcagattttcaggcggcgcagggggcagaggcagagtaggcagcatgactgattattattaggttttttttatgtattttttgac 2119830  T
Q  213 tatgatgatgatgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacatacctttatattatttcttgcgttttaattt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||    
T  2119829 tatgatgatgatgatgtattattgtgacatgttccgtacattttgatatttctatgacatttttcaacatacctttatattatttcttgtgttttaattt 2119730  T
Q  313 tatctgttaaatattattttgtacgtacattttaatttcctgacatatcctagctgtttactttaatttgcaattggatgcaaaaacatgaaaaattctc 412  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||    
T  2119729 tatctgttaaatattattttgtacgtacgttttaatttcctgacatatcctggctgtttactttaatttgcaattggatgcaaaaacagaaaaaattctc 2119630  T
Q  413 ttagataaccagtgatgtctgcactggtctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactgttgtcggcgctttat 512  Q
     ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| || | ||||||||     
T  2119629 ctagataaccagtgatgtctgcactggtctagtttactggtatgaacggcagttaactgccgttggtgccagcggttgttaactgctgccagcgctttac 2119530  T
Q  513 ccaacagttcttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagttttcattgt--taaaagcaattttcataaatttatgtgtt 610  Q
    ||||| ||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||   |||| ||||||||||||||||||||| |    
T  2119529 ccaacggttgttaactgccgctgggagcatttcaatattttacttgtgtcaatatgaagttttcattgtcagaaaatcaattttcataaatttatgtgct 2119430  T
Q  611 ttgaccctgttaatgaggataa 632  Q
    ||||||||||||||||||||||    
T  2119429 ttgaccctgttaatgaggataa 2119408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 223 - 422
Target Start/End: Complemental strand, 31501107 - 31500908
Alignment:
Q  223 atgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacatacctttatattatttcttgcgttttaattttatctgttaa 322  Q
    ||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31501107 atgatgtataattatgacatgttccgtacattttggtatttctatgacattttccgacatacctttatattatttcttccgttttaattttatctgttaa 31501008  T
Q  323 atattattttgtacgtacattttaatttcctgacatatcctagctgtttactttaatttgcaattggatgcaaaaacatgaaaaattctcttagataacc 422  Q
    |||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||    
T  31501007 atattattttgtacgtacattttaatttcccgacatatcctgcctgtttactttaatttgcaattggatgcaaaaacaggaaaaattctcctggataacc 31500908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 224 - 497
Target Start/End: Original strand, 19508660 - 19508946
Alignment:
Q  224 tgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacatacctttatattatttcttgcgttttaattttatctgttaaa 323  Q
    |||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19508660 tgatgtataattatgacatgttccgtacattttggtatttctatgacattttccgacatacctttatattatttcttgcgttttaattttatctgttaaa 19508759  T
Q  324 tattattttgtacgtacattttaatttcctgacata------tcctagctgtttactttaatttgcaattggatgcaaaaacatgaaaaattctcttaga 417  Q
    ||||||||||||||||||||||||||| | ||||||      || | | | |||||||||||||||||||||||||||||||| ||||||||||| | ||    
T  19508760 tattattttgtacgtacattttaattttccgacatatcattttcatggttctttactttaatttgcaattggatgcaaaaacaggaaaaattctcctgga 19508859  T
Q  418 taaccagtgatgtctg-------cactggtctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactg 497  Q
    ||| |||||  |  ||       || ||||||||||||||||| |||||| ||||||||||||||| || |||||||||||||||||    
T  19508860 taatcagtgcagagtgcagacaacattggtctagtttactggtgtgaacggcagttaactgccgcttgtaccagcggttgttaactg 19508946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 20 - 497
Target Start/End: Original strand, 26393703 - 26394159
Alignment:
Q  20 ggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcgctgcc 119  Q
    ||||||||||| ||| |||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||| ||||||| |||||| || || |||||    
T  26393703 ggtgcatatagctgacgatattgtggccaggcaatccgagatgactaaagaggagattgtccaggaggtgatgtggatagccagtactggttgccctgcc 26393802  T
Q  120 cttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgattattattaggnnnnnnnnnnnnnnnnnnngactatgatg 219  Q
    ||||| ||||||||| || |||| |||||||||| ||||||   ||| ||||| || ||||||| ||||||                   |||| ||||     
T  26393803 cttacgtatcagattacccggcgacgcagggggccgaggcatgctagtcagcagggttgattatgattaggctttttatatgtactttttgact-tgatc 26393901  T
Q  220 atgatgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacataccttt-atattatttcttgcgttttaattttatctg 318  Q
    ||| |||||||| ||| ||||||||||| ||||||||  ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||    
T  26393902 atggtgatgtataattatgacatgttccatacatttttttatttctatgacatttttcgacatacattttatattatttcttgcgttttaattttatctg 26394001  T
Q  319 ttaaatattattttgtacgtacattttaatttcctgacatatcctagctgtttactttaatttgcaattggatgcaaaaacatgaaaaattctcttagat 418  Q
    | |||||||||||| ||||    |||||  |||                 |||||||||||||||||||||||||||||| | || |||||  ||   |     
T  26394002 tgaaatattattttttacg----ttttatattc-----------------tttactttaatttgcaattggatgcaaaaagaggacaaatttcctggaaa 26394080  T
Q  419 aaccagtgatgtctgcactggtctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactg 497  Q
    ||||||||  |||||||||||||| |||||||||| |||||  ||||||||||||||||||||||||||||||||||||    
T  26394081 aaccagtgcagtctgcactggtcttgtttactggtgtgaacatcagttaactgccgctggtgccagcggttgttaactg 26394159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 22 - 189
Target Start/End: Original strand, 2777101 - 2777268
Alignment:
Q  22 tgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcgctgccct 121  Q
    ||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || || ||||    
T  2777101 tgcatattgttgacgatattgtggccaggcaagccgagatgactaaagaggagattgtccaggaggtgatgcggatagctagtactagtggccctcccct 2777200  T
Q  122 tacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgattattattag 189  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2777201 tacttatcagatttccaggcggcgcagggggcagaggcagggtaggcagcatggctgattattattag 2777268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 15 - 338
Target Start/End: Complemental strand, 40613026 - 40612699
Alignment:
Q  15 gatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcg 114  Q
    |||| ||| ||||||| | |||||||||||||||  |||||||||||||||||||||||||||||| | |||||||||||||| ||  |||||  ||||     
T  40613026 gatgtggttcatatagctaatgatattgtggccaagcaagccgagatgactaaagaggagattgtctaggaggtgatgcggatggccggtactgatcgcc 40612927  T
Q  115 ctgcccttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgattattattagg-nnnnnnnnnnnnnnnnnnngact 213  Q
    |||||| ||| |||||||||| |||| |||||||||||||||||||  |||||||||| || ||||||| ||||||                    ||||    
T  40612926 ctgcccgtacgtatcagattgtcaggtggcgcagggggcagaggcatggtaggcagcagggttgattatgattaggcttttttttatgtactttttgact 40612827  T
Q  214 atgatgatgatgatgtattattgtgacatgttccgtaca-ttttgatatttctatgacattttccgacatacc-tttatattatttcttgcgttttaatt 311  Q
    |||||||||||||||||| ||| ||||||||||| |||| ||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  40612826 atgatgatgatgatgtataattatgacatgttccatacatttttcgtatttctatgacattttccgacataccttttatattatttcttgcgttttactt 40612727  T
Q  312 ttat-ctgttaaatattattttgtacgt 338  Q
    |||| |||||||||||||||| ||||||    
T  40612726 ttatcctgttaaatattatttcgtacgt 40612699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 15 - 146
Target Start/End: Original strand, 4174723 - 4174854
Alignment:
Q  15 gatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcg 114  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||| |||||     
T  4174723 gatgtggtgcatatagctgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaggaggtgatgcggatagccggtactggtcgcc 4174822  T
Q  115 ctgcccttacttatcagattgccaggcggcgc 146  Q
    ||||| |||| ||||||||||||| |||||||    
T  4174823 ctgccgttacgtatcagattgccaagcggcgc 4174854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 433 - 583
Target Start/End: Original strand, 28654619 - 28654766
Alignment:
Q  433 gcactggtctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttcttaactgccg 532  Q
    |||||||||||||||||||||||||||| |||||||||||||||||  ||||||| |||||||   |||||| |||||| ||||| ||| ||||||||||    
T  28654619 gcactggtctagtttactggtatgaacggcagttaactgccgctggacccagcggctgttaac---tgtcggtgctttacccaacggttgttaactgccg 28654715  T
Q  533 ctgagagcatttcagtattttacttgtgtcaatatgaagttttcattgtta 583  Q
    ||| | ||||||||||||||||||||||||||||  ||| |||||||||||    
T  28654716 ctgggggcatttcagtattttacttgtgtcaatagaaaggtttcattgtta 28654766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 31501311 - 31501136
Alignment:
Q  15 gatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcg 114  Q
    |||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||| |||||||  ||||| |||||     
T  31501311 gatgtggtgcatatagctgatgatattgtggccaggcaagccgagatgactaaagaggatattgtccaggaggtgatgtggatagccggtactggtcgcc 31501212  T
Q  115 ctgcccttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgattattattagg 190  Q
     ||||||||| |||||||||  |||||| |||||||||| ||||||   ||||||||| || ||||| | ||||||    
T  31501211 ttgcccttacgtatcagattttcaggcgacgcagggggccgaggcatgctaggcagcagggttgattgtgattagg 31501136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 15 - 171
Target Start/End: Original strand, 34458462 - 34458618
Alignment:
Q  15 gatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcg 114  Q
    |||| ||||||||||| |||||||||||||||||| ||||||||||||| |||||||| ||||||||| |||||||| | ||||||  ||||  ||| |     
T  34458462 gatgtggtgcatatagctgatgatattgtggccaggcaagccgagatgattaaagaggtgattgtccaggaggtgatacagatagcaggtaccggtctcc 34458561  T
Q  115 ctgcccttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagc 171  Q
    |||||||||| ||||||||||||||||||||||||||||| | |||  |||||||||    
T  34458562 ctgcccttacatatcagattgccaggcggcgcagggggcatatgcatggtaggcagc 34458618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 210 - 330
Target Start/End: Complemental strand, 15738183 - 15738061
Alignment:
Q  210 gactatgatgatgatgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacatacc-tttatattatttcttgcgtttta 308  Q
    ||||||||||| | |||||||||||| ||||||||| ||||||||||  ||||||||||||||||||  ||||||| ||||||||||||||||||| |||    
T  15738183 gactatgatgaaggtgatgtattattatgacatgtttcgtacattttagtatttctatgacattttcgtacataccttttatattatttcttgcgtatta 15738084  T
Q  309 attttatc-tgttaaatattatt 330  Q
    |||||||| ||||||||||||||    
T  15738083 attttatcatgttaaatattatt 15738061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 505 - 595
Target Start/End: Complemental strand, 31500872 - 31500780
Alignment:
Q  505 cgctttatccaacagttcttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagttttcattgt--taaaagcaattttc 595  Q
    ||||||||||||| ||| ||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||   |||||||||||||    
T  31500872 cgctttatccaacggttgttaactgccgctgaaggcattttagtattttacttgtgtcaatatgaagttttcattgtcagaaaagcaattttc 31500780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 59 - 190
Target Start/End: Original strand, 19508503 - 19508633
Alignment:
Q  59 gatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcgctgcccttacttatcagattgccaggcggcgcagggggcagagg 158  Q
    |||||||||||||||||||||||| |||||||||||||||||  ||||| |||||  || |||||| ||||||||||||||||||| ||||||||  |||    
T  19508503 gatgactaaagaggagattgtccaggaggtgatgcggatagccggtactggtcgc-atgtccttacgtatcagattgccaggcggcacagggggccaagg 19508601  T
Q  159 cagagtaggcagcatggctgattattattagg 190  Q
    ||   |||||||||  | ||||||| ||||||    
T  19508602 catgctaggcagcagtgttgattatgattagg 19508633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 58 - 183
Target Start/End: Complemental strand, 15738347 - 15738222
Alignment:
Q  58 agatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcgctgcccttacttatcagattgccaggcggcgcagggggcagag 157  Q
    |||||||||||||||| | |||  | |||||||| ||||| |  |||||  ||||| |||||||||| ||||||||||||||||  ||||||||||||||    
T  15738347 agatgactaaagaggatactgtttaggaggtgattcggattggcagtaccggtcgccctgcccttacgtatcagattgccaggcatcgcagggggcagag 15738248  T
Q  158 gcagagtaggcagcatggctgattat 183  Q
    |||  |||| ||| | ||||||||||    
T  15738247 gcatcgtagacagtagggctgattat 15738222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 57 - 190
Target Start/End: Original strand, 21833472 - 21833605
Alignment:
Q  57 gagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcgctgcccttacttatcagattgccaggcggcgcagggggcaga 156  Q
    |||||||||||||||||| |||| || ||| |||| ||||| | ||||||| ||||| |||||||||| ||||  |||| |||||  | |||||||||||    
T  21833472 gagatgactaaagaggagcttgtgcaggagatgatccggattggtagtactggtcgccctgcccttacatatcgaattgtcaggcatctcagggggcaga 21833571  T
Q  157 ggcagagtaggcagcatggctgattattattagg 190  Q
    ||||  ||||||||||  | ||||||| ||||||    
T  21833572 ggcatcgtaggcagcagagttgattatcattagg 21833605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 224 - 316
Target Start/End: Original strand, 26172856 - 26172949
Alignment:
Q  224 tgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacataccttt-atattatttcttgcgttttaattttatc 316  Q
    |||||||||||| ||||||||| | ||| || |||||||||||| |||||| |  || ||||||| ||||||||||||||||||||||||||||    
T  26172856 tgatgtattattatgacatgtttcataccttgtgatatttctataacatttacgtacgtaccttttatattatttcttgcgttttaattttatc 26172949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 431 - 496
Target Start/End: Original strand, 13331805 - 13331870
Alignment:
Q  431 ctgcactggtctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaact 496  Q
    ||||||||||   ||| |||||| |||||| |||||||||||||||||||||||||||||||||||    
T  13331805 ctgcactggttctgttaactggtgtgaacggcagttaactgccgctggtgccagcggttgttaact 13331870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 309
Target Start/End: Original strand, 4174927 - 4175022
Alignment:
Q  215 tgatgatgatgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacataccttt-atattatttcttgcgttttaa 309  Q
    |||||||  |||||||| ||| |||||||||| |||||||||  |||||||| |||| |||| ||| ||||||| ||||||||||||| |||||||    
T  4174927 tgatgatcgtgatgtataattatgacatgttctgtacattttcttatttctacgacactttcggacgtaccttttatattatttcttgtgttttaa 4175022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 29902197 - 29902372
Alignment:
Q  15 gatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcg 114  Q
    |||| |||||| |||| |||| ||||||||| |||    | |||||||||||||||||||||  | || |||||||| ||||| |  | |||| |||||     
T  29902197 gatgtggtgcagatagctgataatattgtggtcaggagtggcgagatgactaaagaggagatatttcaggaggtgattcggattggcactactggtcgcc 29902296  T
Q  115 ctgcccttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgattattattagg 190  Q
    |||||||||| |||  |||| |||||| ||| ||||||||||| ||  |||||||||| || ||||| | ||||||    
T  29902297 ctgcccttacatattggatttccaggcagcgtagggggcagagacatcgtaggcagcagggttgattttgattagg 29902372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 172
Target Start/End: Original strand, 20725488 - 20725606
Alignment:
Q  54 gccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcgctgcccttacttatcagattgccaggcggcgcagggggc 153  Q
    ||||||||||||||||||||| | || || ||| |||| ||||| |  |||||| ||||| |||||||||  |||||||||| || || || ||||||||    
T  20725488 gccgagatgactaaagaggagctcgtgcaggagatgatccggattggcagtactggtcgccctgcccttatgtatcagattgtcatgcagcacagggggc 20725587  T
Q  154 agaggcagagtaggcagca 172  Q
    | |||||  ||||||||||    
T  20725588 ataggcatcgtaggcagca 20725606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 225 - 336
Target Start/End: Original strand, 20725658 - 20725770
Alignment:
Q  225 gatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacatacc-tttatattatttcttgcgttttaattttatc-tgttaa 322  Q
    ||||||||||| ||||||  | ||||| || ||||||||||||||||||| |  || |||| |||||||||||||||| |||||| ||||||| ||||||    
T  20725658 gatgtattattatgacatcattcgtaccttgtgatatttctatgacatttacgtacgtaccttttatattatttcttgtgttttatttttatcatgttaa 20725757  T
Q  323 atattattttgtac 336  Q
    | ||||||| ||||    
T  20725758 a-attatttcgtac 20725770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 457 - 497
Target Start/End: Original strand, 37313308 - 37313348
Alignment:
Q  457 aacgacagttaactgccgctggtgccagcggttgttaactg 497  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  37313308 aacgacagttaactgccgctggagccagcggttgttaactg 37313348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 694914 - 694860
Alignment:
Q  15 gatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaag 69  Q
    |||| ||||||||||  ||||||||||||||| || |||||||||||||||||||    
T  694914 gatgtggtgcatataactgatgatattgtggctaggcaagccgagatgactaaag 694860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 523 - 575
Target Start/End: Original strand, 19508995 - 19509046
Alignment:
Q  523 ttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagtttt 575  Q
    |||||||||| ||||| ||||| ||||||||||||||||||||| ||||||||    
T  19508995 ttaactgccgatgaga-cattttagtattttacttgtgtcaataggaagtttt 19509046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 445 - 497
Target Start/End: Complemental strand, 31173530 - 31173478
Alignment:
Q  445 tttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactg 497  Q
    ||||||||| |||||| ||||||||||| ||||||||||| ||| ||||||||    
T  31173530 tttactggtgtgaacggcagttaactgctgctggtgccaggggtagttaactg 31173478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 496
Target Start/End: Original strand, 19507892 - 19507929
Alignment:
Q  459 cgacagttaactgccgctggtgccagcggttgttaact 496  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  19507892 cgacagttaactgccgctggtgctagcggtagttaact 19507929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 29902397 - 29902438
Alignment:
Q  210 gactatgatgatgatgatgtattattgtgacatgttccgtac 251  Q
    ||||||||||||| |||||||||||| ||||||||| |||||    
T  29902397 gactatgatgatggtgatgtattattatgacatgtttcgtac 29902438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 462 - 498
Target Start/End: Complemental strand, 33405755 - 33405719
Alignment:
Q  462 cagttaactgccgctggtgccagcggttgttaactgt 498  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  33405755 cagttaactgctgctggtgccaacggttgttaactgt 33405719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 523 - 575
Target Start/End: Complemental strand, 34457009 - 34456957
Alignment:
Q  523 ttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagtttt 575  Q
    |||||| |||||||| |||||| |||||||||||||||||  ||| |||||||    
T  34457009 ttaactaccgctgagggcatttaagtattttacttgtgtctttataaagtttt 34456957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 459 - 495
Target Start/End: Complemental strand, 37311034 - 37310998
Alignment:
Q  459 cgacagttaactgccgctggtgccagcggttgttaac 495  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  37311034 cgacagttaactgcggctggagccagcggttgttaac 37310998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 237 - 581
Target Start/End: Complemental strand, 27105985 - 27105643
Alignment:
Q  237 tgacatgttccgtacattttgatatttctatgacattttccgacatacctttatattatttcttgcgttttaattttatctgttaaatattattttgtac 336  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27105985 tgacatgtttcgtacattttggtatttctatgacattttccgacatacctttatattatttattgcgttttaattttatctgttaaatattattttgtac 27105886  T
Q  337 gtacattttaatttcctgacatatcctagctgtttactttaatttgcaattggatgcaaaaacatgaaaaattctcttagataaccagtgatgtctgcac 436  Q
    |||| |||||||||| | ||||||||| ||||||||||||||||| |||||||||| ||||||| |||||||| || | |||||||||||  | | ||||    
T  27105885 gtacgttttaatttcttaacatatcctggctgtttactttaatttacaattggatgaaaaaacaggaaaaattatcctggataaccagtgcagacagcac 27105786  T
Q  437 tggtctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttcttaactgccgc-tg 535  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||   || |||||||||||||||| ||| |||| |||||| ||    
T  27105785 tggtctagtttactggtatgaacggcagttaactgccgctggtgccagcgggtgttaac---tgccggcgctttatccaacggttgttaattgccgcttg 27105689  T
Q  536 agagcatttcagtattttacttgtgtcaatatgaagttttcattgt 581  Q
     |  ||||| ||||||||||||||||||||||||||||||||||||    
T  27105688 gggacattttagtattttacttgtgtcaatatgaagttttcattgt 27105643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 224 - 595
Target Start/End: Original strand, 31387675 - 31388032
Alignment:
Q  224 tgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacatacctttatattatttcttgcgttttaattttatctgttaaa 323  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31387675 tgatgtataattatgacatgttccgtacattttgatatttctatgacattttccgacatacctttatattatttcttgcgttttaatattatctgttaaa 31387774  T
Q  324 tattattttgtacgtacattttaatttcctgacatatcctagctgtttactttaatttgcaattggatgcaaaaacatgaaaaattctcttagataacca 423  Q
    ||||||||||||||||| ||||||||| | ||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||| | | ||||||      
T  31387775 tattattttgtacgtacgttttaattttccgacatatcctgactgtttactttaatttgcaattggatgcaaaaacaggaaaaattcccctggataac-- 31387872  T
Q  424 gtgatgtctgcactggtctagtttactggta-tgaacgacagttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttc 522  Q
                ||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||   |||||||||||||||||||||||     
T  31387873 ------------ctggtctagtttacttgtattgaacgatagttaactgccgctggtgccagcggttgttaac---tgtcggcgctttatccaacagttg 31387957  T
Q  523 ttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagttttcattgt--taaaagcaattttc 595  Q
    |||||||||||||   |||||| |||||||||||| |||||||||||| |||||||| |  ||||||||||||||    
T  31387958 ttaactgccgctggaggcattttagtattttacttatgtcaatatgaaattttcattatcataaaagcaattttc 31388032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 224 - 586
Target Start/End: Complemental strand, 4911910 - 4911565
Alignment:
Q  224 tgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacatacctttatattatttcttgcgttttaattttatctgttaaa 323  Q
    |||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  4911910 tgatgtataattatgacatgttccgtacattttggtatttctatgacattttccgacatacctttatattatttcttgcattttaattttatctattaaa 4911811  T
Q  324 tattattttgtacgtacattttaatttcctgacatatcctagctgtttactttaatttgcaattggatgcaaaaacatgaaaaattctcttagataacca 423  Q
    |||||||||||||| || ||||||||||| |||||||||| | |||||||||||||||||||||||||||||||| |  |||||||||  | |||||       
T  4911810 tattattttgtacgcacgttttaatttcccgacatatcctggttgtttactttaatttgcaattggatgcaaaaatagaaaaaattcttctggataa--- 4911714  T
Q  424 gtgatgtctgcactggtctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttct 523  Q
                |||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||   || ||||| |||| ||||| ||| |    
T  4911713 -----------tctggtctagtttactggtatgaacgacagttaactgccgctggatccagcggatgttaac---tgccggcgttttacccaacggttgt 4911628  T
Q  524 taactgccgctgagagcatttcagtattttacttgtgtcaatatgaagttttcattgttaaaa 586  Q
    |||| | ||||||  |||||| | |||||||||||||||||||||||||||||||||| ||||    
T  4911627 taaccgtcgctgatggcattttaatattttacttgtgtcaatatgaagttttcattgtcaaaa 4911565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 224 - 534
Target Start/End: Complemental strand, 42463597 - 42463304
Alignment:
Q  224 tgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacatacctttatattatttcttgcgttttaattttatctgttaaa 323  Q
    |||||||| ||| ||||||||| ||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  42463597 tgatgtataattatgacatgtttcgtacattttggtatttctatgatattttccaacatacctttatattatttcttgcgttttaattttatttgttaaa 42463498  T
Q  324 tattattttgtacgtacattttaatttcctgacatatcctagctgtttactttaatttgcaattggatgcaaaaacatgaaaaattctcttagataacca 423  Q
    ||||||||||||||||| ||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||| | ||||||      
T  42463497 tattattttgtacgtacgttttaatttcccgacatatcctggctgttttctttaatttgcaattggatgcaaaaacaagaaaaattctcctggataac-- 42463400  T
Q  424 gtgatgtctgcactggtctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttct 523  Q
                |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||   |||||| |||||||||||| ||| |    
T  42463399 ------------ctggtctagtttactggtatgaacgacagttaactgccgctggatccagcggttgttaac---tgtcggtgctttatccaacggttgt 42463315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 13 - 190
Target Start/End: Original strand, 50914824 - 50915001
Alignment:
Q  13 gagatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcg 112  Q
    |||||| ||||||||| ||||| |||||||||||||| |||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||| ||    
T  50914824 gagatgtggtgcatattgttgacgatattgtggccaggcaagccgagacgactaaagaggagatcgtccaggaggtgatgcggatagctagtactagccg 50914923  T
Q  113 cgctgcccttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgattattattagg 190  Q
    | |||||||||||||||| |||| ||||||||||||||| |||||| || |||||||||| |||||||||||||||||    
T  50914924 ccctgcccttacttatcaaattgtcaggcggcgcaggggccagaggtagggtaggcagcagggctgattattattagg 50915001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 18242906 - 18243076
Alignment:
Q  20 ggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcgctgcc 119  Q
    ||||||||| | ||| |||||||||||||| |||||||| ||||||||||||||||| ||| | |||||||| | |||| |||||||||||||| |||||    
T  18242906 ggtgcatattgctgacgatattgtggccaggcaagccgatatgactaaagaggagatcgtctaggaggtgatacagatatctagtactagtcgccctgcc 18243005  T
Q  120 cttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgattattattagg 190  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  18243006 cttacttatcagattgccaggcggcgcagggggcagaggcagggtaggcagcagggctgattattattagg 18243076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 31387476 - 31387651
Alignment:
Q  15 gatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcg 114  Q
    |||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||| |||||||  ||||| |||||     
T  31387476 gatgtggtgcatatagctgatgatattgtggccaggcaagccgagatgactaaagaggagactgtccaggaggtgatgtggatagccggtactggtcgcc 31387575  T
Q  115 ctgcccttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgattattattagg 190  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||   ||||||||| || ||||| | ||||||    
T  31387576 ctgcccttacgtatcagattgccaggcggcgcagggggccgaggcatgctaggcagcagggttgattgtgattagg 31387651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 224 - 359
Target Start/End: Complemental strand, 46192267 - 46192131
Alignment:
Q  224 tgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacataccttt-atattatttcttgcgttttaattttatctgttaa 322  Q
    |||||||| ||| ||||||||||||||||||||| ||||| ||||||||||| | |||||| ||| ||||||||||||||||||||||||||||||||||    
T  46192267 tgatgtataattatgacatgttccgtacattttggtatttgtatgacatttttcaacatactttttatattatttcttgcgttttaattttatctgttaa 46192168  T
Q  323 atattattttgtacgtacattttaatttcctgacata 359  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  46192167 atattattttgtacgtacgttttaatttcccgacata 46192131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 4912110 - 4911935
Alignment:
Q  15 gatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcg 114  Q
    |||| ||||||||||   ||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||| ||||  ||| | |||||     
T  4912110 gatgtggtgcatataaccgatgatattgtggccaggcaagccgagatgactaaagagaagattgtccaggaggtgatgcgggtagccggtattggtcgcc 4912011  T
Q  115 ctgcccttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgattattattagg 190  Q
    |||||||||  |||||||||||||||||||||||||||| |||||| | |||||||||||| ||||| | ||||||    
T  4912010 ctgcccttatatatcagattgccaggcggcgcagggggctgaggcatactaggcagcatggttgattgtgattagg 4911935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 15 - 309
Target Start/End: Complemental strand, 15291763 - 15291467
Alignment:
Q  15 gatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcg 114  Q
    |||| ||||||||||| |||||||||||||| ||| |||||||||||||||||| ||||||||||||| |||||||| ||||||||  ||| | ||||      
T  15291763 gatgtggtgcatatagctgatgatattgtggtcaggcaagccgagatgactaaataggagattgtccaggaggtgatacggatagccggtattggtcgtc 15291664  T
Q  115 ctgcccttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgattattattagg-nnnnnnnnnnnnnnnnnnngact 213  Q
    |||||||||| ||||||||||||||||||||||| |||| ||||||   ||||||| | || ||||||| ||||||                     |||    
T  15291663 ctgcccttacgtatcagattgccaggcggcgcagagggccgaggcatgctaggcagtaaggttgattatgattaggcttttttttatgtactattttact 15291564  T
Q  214 atgatgatgatgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacatacc-tttatattatttcttgcgttttaa 309  Q
     |||||||  |||||||| ||| ||||||||||||||||||||  |||||||||||||||||| |||||||| ||||||||||||||||| ||||||    
T  15291563 gtgatgatcgtgatgtataattatgacatgttccgtacatttttttatttctatgacattttcggacataccttttatattatttcttgcattttaa 15291467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 27106195 - 27106025
Alignment:
Q  20 ggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcgctgcc 119  Q
    ||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||| |||| |||||||||||||||||  ||||| ||||| |||||    
T  27106195 ggtgcatatagctgatgatattgtggtcaggcaagccgagatgactaaagaggagattttccaggaggtgatgcggatagccggtactggtcgccctgcc 27106096  T
Q  120 cttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgattattattagg 190  Q
    ||||  |||||||||| ||||||||| ||||||| ||||||   |||||||||||| ||||| | ||||||    
T  27106095 cttatgtatcagattgtcaggcggcgtagggggccgaggcatgctaggcagcatggttgattgtgattagg 27106025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 46192467 - 46192293
Alignment:
Q  15 gatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcg 114  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||| |  |||||||||||     
T  46192467 gatgtggtgcatatagttgatgatattgtggccaggcaagccgagatgactaaagaggagattgtcctggaggtgatgcggataaccggtactagtcgcc 46192368  T
Q  115 ctgcccttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgattattattag 189  Q
    || ||||||  |||||||||| |||||| || ||||||| ||||||   ||||||||| |  ||||||| |||||    
T  46192367 ctccccttatgtatcagattgtcaggcgacgtagggggccgaggcattctaggcagcacgtttgattatgattag 46192293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 15 - 181
Target Start/End: Complemental strand, 42463797 - 42463631
Alignment:
Q  15 gatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcg 114  Q
    |||| ||||||||||| |||||||||||||| |||  |||||||||||||||| |||||||||||||| |||||||||||||||||  ||||| |||||     
T  42463797 gatgtggtgcatatagctgatgatattgtggtcaggaaagccgagatgactaacgaggagattgtccaggaggtgatgcggatagccggtactggtcgcc 42463698  T
Q  115 ctgcccttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgatt 181  Q
    |||||||||| ||| |||||| |||||||||||||| || ||||||   ||||| |||||| |||||    
T  42463697 ctgcccttacgtattagattgtcaggcggcgcagggagccgaggcatgctaggccgcatggttgatt 42463631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 21 - 134
Target Start/End: Complemental strand, 42055918 - 42055805
Alignment:
Q  21 gtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcgctgccc 120  Q
    ||||||||||||| ||||||||||||||   |||| |||||||||||||||||||||||||| |||||||||||||||||  ||||| ||||| ||||||    
T  42055918 gtgcatatagttggtgatattgtggccaagaaagctgagatgactaaagaggagattgtccaggaggtgatgcggatagccggtactggtcgccctgccc 42055819  T
Q  121 ttacttatcagatt 134  Q
    |||| |||||||||    
T  42055818 ttacgtatcagatt 42055805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 369 - 494
Target Start/End: Complemental strand, 22093510 - 22093385
Alignment:
Q  369 tttactttaatttgcaattggatgcaaaaacatgaaaaattctcttagataa-ccagtgatgtctgcactggtctagtttactggtatgaacgacagtta 467  Q
    ||||||||||||||||||||||||||||||||||| ||||| || |||| || ||||||  | ||||||||||||  ||||||||| |||||| ||||||    
T  22093510 tttactttaatttgcaattggatgcaaaaacatgacaaatt-tcctagaaaaaccagtgtagactgcactggtcttatttactggtgtgaacggcagtta 22093412  T
Q  468 actgccgctggtgccagcggttgttaa 494  Q
    |||||||||||| ||||||||||||||    
T  22093411 actgccgctggtaccagcggttgttaa 22093385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 457 - 576
Target Start/End: Complemental strand, 18239588 - 18239472
Alignment:
Q  457 aacgacagttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttcttaactgccgctgagagcatttcagtattttact 556  Q
    ||||||||||||||||||||||| |||||||||||||||   || |||||  | ||  | | ||| |||||||||| || | | |||| |||||||||||    
T  18239588 aacgacagttaactgccgctggtaccagcggttgttaac---tgccggcgtatcattgagcggttgttaactgccgttgggggtattttagtattttact 18239492  T
Q  557 tgtgtcaatatgaagttttc 576  Q
    |||||||||| |||||||||    
T  18239491 tgtgtcaataggaagttttc 18239472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 523 - 586
Target Start/End: Complemental strand, 33216408 - 33216345
Alignment:
Q  523 ttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagttttcattgttaaaa 586  Q
    |||||| ||||||||||||||| |||||||||||||||||| | ||||||||||| ||| ||||    
T  33216408 ttaactaccgctgagagcatttaagtattttacttgtgtcattgtgaagttttcaatgtcaaaa 33216345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 431 - 497
Target Start/End: Complemental strand, 36354709 - 36354643
Alignment:
Q  431 ctgcactggtctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactg 497  Q
    ||||||||||   ||| |||||| |||||||||||||||||||||||| | ||||||||||||||||    
T  36354709 ctgcactggttctgttaactggtgtgaacgacagttaactgccgctggagtcagcggttgttaactg 36354643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 461 - 497
Target Start/End: Original strand, 39063242 - 39063278
Alignment:
Q  461 acagttaactgccgctggtgccagcggttgttaactg 497  Q
    ||||||||||||||||||||||| |||||||||||||    
T  39063242 acagttaactgccgctggtgccaacggttgttaactg 39063278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 497
Target Start/End: Original strand, 7407377 - 7407444
Alignment:
Q  431 ctgcactggtctagtttactggtatgaacgacagttaactgccgct-ggtgccagcggttgttaactg 497  Q
    ||||||||||   ||| |||||| ||||| |||||||||||||||| ||| |||||||||||||||||    
T  7407377 ctgcactggttctgttaactggtgtgaacaacagttaactgccgctaggttccagcggttgttaactg 7407444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 448 - 497
Target Start/End: Complemental strand, 48138801 - 48138751
Alignment:
Q  448 actggtatgaacgacagttaactgccgctgg-tgccagcggttgttaactg 497  Q
    |||||| |||||||||||||||||||||||| | ||||||| |||||||||    
T  48138801 actggtgtgaacgacagttaactgccgctggatcccagcggatgttaactg 48138751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 541 - 595
Target Start/End: Complemental strand, 42463257 - 42463201
Alignment:
Q  541 atttcagtattttacttgtgtcaatatgaagttttcattgt--taaaagcaattttc 595  Q
    |||| ||||||||| || |||||||||||||||||||||||   |||||||||||||    
T  42463257 attttagtattttaattatgtcaatatgaagttttcattgtcagaaaagcaattttc 42463201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 431 - 498
Target Start/End: Original strand, 28865807 - 28865875
Alignment:
Q  431 ctgcactggtctagtttactggtatgaacgacagttaactgccgct-ggtgccagcggttgttaactgt 498  Q
    ||||||||||   ||| |||||| |||||| ||||||||||||||| ||| | ||||||||||||||||    
T  28865807 ctgcactggttctgttaactggtgtgaacggcagttaactgccgctgggttctagcggttgttaactgt 28865875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 286 - 314
Target Start/End: Original strand, 50915091 - 50915119
Alignment:
Q  286 tttatattatttcttgcgttttaatttta 314  Q
    |||||||||||||||||||||||||||||    
T  50915091 tttatattatttcttgcgttttaatttta 50915119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 179; Significance: 3e-96; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 224 - 497
Target Start/End: Complemental strand, 10825688 - 10825429
Alignment:
Q  224 tgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacatacctttatattatttcttgcgttttaattttatctgttaaa 323  Q
    |||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10825688 tgatgtataattatgacatgttccgtacattttggtatttctatgacattttccgacatacctttatattatttcttgcgttttaattttatctgttaaa 10825589  T
Q  324 tattattttgtacgtacattttaatttcctgacatatcctagctgtttactttaatttgcaattggatgcaaaaacatgaaaaattctcttagataacca 423  Q
    ||||||||||||||||||||||||||||| |||||||| |  |||||||||||||||||||||| |||||||||||| ||||||||||| | ||||||      
T  10825588 tattattttgtacgtacattttaatttcccgacatatcttgactgtttactttaatttgcaattagatgcaaaaacaggaaaaattctcctggataac-- 10825491  T
Q  424 gtgatgtctgcactggtctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactg 497  Q
                |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10825490 ------------ctggtctagtttactggtatgaacgacagttaactgccgctgatgccagcggttgttaactg 10825429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 13 - 498
Target Start/End: Original strand, 7262881 - 7263337
Alignment:
Q  13 gagatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcg 112  Q
    |||||| ||||||||||| ||| |||||||||| ||| |||||| |||||||||||||||| |||||||| |||||||||||||||||  ||||| ||||    
T  7262881 gagatgtggtgcatatagctgacgatattgtggtcaggcaagccaagatgactaaagaggatattgtccaggaggtgatgcggatagccggtactggtcg 7262980  T
Q  113 cgctgcccttacttatcagattgccaggcggcgcaggggg-cagaggcagagtaggcagcatggctgattattattaggnnnnnnnnnnnnnnnnnnn-g 210  Q
    | || ||||||| ||||||||| ||||||||||||||||| | ||||||   ||||||||| || ||||||| || |||                    |    
T  7262981 cccttcccttacgtatcagattaccaggcggcgcaggggggccgaggcatgctaggcagcagggttgattatgataaggcttttttttatgtactttttg 7263080  T
Q  211 actatgatgatgatgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacataccttt-atattatttcttgcgttttaa 309  Q
    ||| |||| ||| |||||||| ||| ||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7263081 act-tgatcatggtgatgtataattatgacatgttccgtacatttttttatttctatgacattttccgacataccttttatattatttcttgcgttttaa 7263179  T
Q  310 ttttatctgttaaatattattttgtacgtacattttaatttcctgacatatcctagctgtttactttaatttgcaattggatgcaaaaacatgaaaaatt 409  Q
    |||||||||| |||||||||||||||||    |||||  |||                 |||||||||||||||||||||||||||||||| || |||||    
T  7263180 ttttatctgtgaaatattattttgtacg----ttttatattc-----------------tttactttaatttgcaattggatgcaaaaacaggacaaatt 7263258  T
Q  410 ctcttagataaccagtgatgtctgcactggtctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactgt 498  Q
     || | || ||          |||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  7263259 -tcctggaaaa---------actgcactggtcttgtttactggtgtgaacggcagttaactgccgctggtgccagcggttgttaactgt 7263337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 37980435 - 37980261
Alignment:
Q  15 gatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcg 114  Q
    |||| ||||||||| | ||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||     
T  37980435 gatgtggtgcatattgctgacgatattgtggccaggcaagccgagatgactaaagaggagattgtccacgaggtgatgctgatagc-agtactagtcgcc 37980337  T
Q  115 ctgcccttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgattattattagg 190  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||| |||| ||||| |||||||||||||||||    
T  37980336 ctgcccttacttatcagattgccaggcggcgtaggggtcagaggcagggtagacagcagggctgattattattagg 37980261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 15 - 160
Target Start/End: Complemental strand, 10825889 - 10825744
Alignment:
Q  15 gatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcg 114  Q
    |||| ||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||  ||||| |||||     
T  10825889 gatgtggtgcatatagctgatgatattgtggtcaggcaagccgagatgactaaagaggagattgtccaggaggtgatgcggatagccggtactggtcgcc 10825790  T
Q  115 ctgcccttacttatcagattgccaggcggcgcagggggcagaggca 160  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||    
T  10825789 ctgcccttacgtatcagattgccaggcggcgcagggggccgaggca 10825744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 14 - 150
Target Start/End: Original strand, 24169491 - 24169627
Alignment:
Q  14 agatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgc 113  Q
    ||||| ||||||||| | ||| |||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||     
T  24169491 agatgtggtgcatattgctgacgatattgtggccaggcaagccgagatgactaaaaaggagattgtccaggaggtgatgcggatagctagtactagtcgt 24169590  T
Q  114 gctgcccttacttatcagattgccaggcggcgcaggg 150  Q
     ||||||||| ||||||||||| ||||||||||||||    
T  24169591 actgcccttaattatcagattgtcaggcggcgcaggg 24169627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 15 - 148
Target Start/End: Original strand, 19876528 - 19876661
Alignment:
Q  15 gatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcg 114  Q
    |||| ||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||| | |||||||||||||||||  ||||| |||||     
T  19876528 gatgtggtgcatatagctgatgatattgtggccaggcaagtcgagatgactaaagaggagattgtctaggaggtgatgcggatagccggtactggtcgcc 19876627  T
Q  115 ctgcccttacttatcagattgccaggcggcgcag 148  Q
    |||||||||| |||||||||||||||| ||||||    
T  19876628 ctgcccttacgtatcagattgccaggcagcgcag 19876661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 57 - 160
Target Start/End: Original strand, 23067167 - 23067270
Alignment:
Q  57 gagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcgctgcccttacttatcagattgccaggcggcgcagggggcaga 156  Q
    |||||||||||||||||||||||||| ||||||||| |||||||  ||||| ||||| |||||||||| ||||||||| |||||||||||||||||| ||    
T  23067167 gagatgactaaagaggagattgtccaggaggtgatggggatagccggtactggtcgccctgcccttacgtatcagattaccaggcggcgcagggggccga 23067266  T
Q  157 ggca 160  Q
    ||||    
T  23067267 ggca 23067270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 465 - 581
Target Start/End: Original strand, 34394133 - 34394246
Alignment:
Q  465 ttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttcttaactgccgctgagagcatttcagtattttacttgtgtcaa 564  Q
    ||||||||||||||||||||||||||||||||| ||   |||||||| ||||| ||| ||||||| ||||| |  ||||| | |||||||||||||||||    
T  34394133 ttaactgccgctggtgccagcggttgttaactgatg---gcgctttacccaacggttgttaactgtcgctggggacattttattattttacttgtgtcaa 34394229  T
Q  565 tatgaagttttcattgt 581  Q
    |||||||||||||||||    
T  34394230 tatgaagttttcattgt 34394246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 215 - 309
Target Start/End: Original strand, 23067328 - 23067423
Alignment:
Q  215 tgatgatgatgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacatacc-tttatattatttcttgcgttttaa 309  Q
    |||||||  |||||||| ||| ||||||||||||||||||||  |||||||||||||||||  ||| |||| ||||||||||||||||||||||||    
T  23067328 tgatgatcgtgatgtataattatgacatgttccgtacattttcttatttctatgacatttttggacgtaccttttatattatttcttgcgttttaa 23067423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 464 - 596
Target Start/End: Complemental strand, 10825436 - 10825305
Alignment:
Q  464 gttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttcttaactgccgctgagagcatttcagtattttacttgtgtca 563  Q
    |||||||||||||||  |||||||||||| ||||    |||||||||| |||||  || || ||| || ||  | |||||| ||||||||||||||||||    
T  10825436 gttaactgccgctggatccagcggttgttgactgc---cggcgctttacccaacgattgttcacttccactaggggcattttagtattttacttgtgtca 10825340  T
Q  564 atatgaagttttcattgt--taaaagcaattttca 596  Q
    ||||||||||||||||||  |||||||||||||||    
T  10825339 atatgaagttttcattgtcataaaagcaattttca 10825305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 215 - 309
Target Start/End: Original strand, 19876732 - 19876827
Alignment:
Q  215 tgatgatgatgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacatacc-tttatattatttcttgcgttttaa 309  Q
    |||||||  |||||||| ||| ||||||| ||| ||||||||  |||||||||||||||||| ||| |||| |||||||||||||| |||||||||    
T  19876732 tgatgatcgtgatgtataattatgacatgctccatacattttcttatttctatgacattttcagacgtaccgtttatattatttctagcgttttaa 19876827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 250 - 314
Target Start/End: Complemental strand, 37980211 - 37980146
Alignment:
Q  250 acattttgatatttctatgacattttccgacatac-ctttatattatttcttgcgttttaatttta 314  Q
    ||||||| ||||||||||||||||| |  || |||  |||||||||||||||||||||||||||||    
T  37980211 acattttcatatttctatgacatttacgtacgtacgttttatattatttcttgcgttttaatttta 37980146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 457 - 497
Target Start/End: Original strand, 1696624 - 1696664
Alignment:
Q  457 aacgacagttaactgccgctggtgccagcggttgttaactg 497  Q
    ||||||| |||||||||||||| ||||||||||||||||||    
T  1696624 aacgacatttaactgccgctggagccagcggttgttaactg 1696664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 506 - 579
Target Start/End: Complemental strand, 42449025 - 42448951
Alignment:
Q  506 gctttatccaacagttcttaactgccgctgagagcatttcagtatttt-acttgtgtcaatatgaagttttcatt 579  Q
    |||||||||||| ||| |||||||||| | ||  ||||| | |||||| ||||||||||||||||| ||||||||    
T  42449025 gctttatccaacggttgttaactgccgttaaggacattttaatatttttacttgtgtcaatatgaaattttcatt 42448951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 498
Target Start/End: Complemental strand, 36348703 - 36348662
Alignment:
Q  457 aacgacagttaactgccgctggtgccagcggttgttaactgt 498  Q
    |||||||||||||||||||| | ||||| |||||||||||||    
T  36348703 aacgacagttaactgccgctagagccaggggttgttaactgt 36348662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 431 - 494
Target Start/End: Original strand, 6556637 - 6556701
Alignment:
Q  431 ctgcactggtctagtttactggtatgaacgacagttaactgccgct-ggtgccagcggttgttaa 494  Q
    ||||||||||   ||| |||||| |||||| ||||||||||||||| ||| ||||||||||||||    
T  6556637 ctgcactggttctgttaactggtgtgaacggcagttaactgccgctgggttccagcggttgttaa 6556701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 24169673 - 24169705
Alignment:
Q  210 gactatgatgatgatgatgtattattgtgacat 242  Q
    |||||||||||||||||||||||||| ||||||    
T  24169673 gactatgatgatgatgatgtattattatgacat 24169705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 286 - 314
Target Start/End: Original strand, 24169720 - 24169748
Alignment:
Q  286 tttatattatttcttgcgttttaatttta 314  Q
    |||||||||||||||||||||||||||||    
T  24169720 tttatattatttcttgcgttttaatttta 24169748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 162; Significance: 4e-86; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 223 - 581
Target Start/End: Original strand, 5620468 - 5620819
Alignment:
Q  223 atgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacataccttt-atattatttcttgcgttttaattttatctgtta 321  Q
    ||||||||| ||| |||||  |||||||||||||||||||| |||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||    
T  5620468 atgatgtataattatgacacattccgtacattttgatatttgtatgacattttctgacatactttttatattatttcttgcgttttaattttatctgtta 5620567  T
Q  322 aatattattttgtacgtacattttaatttcctgacatatcctagctgtttactttaatttgcaattggatgcaaaaacatgaaaaattctcttagataac 421  Q
    ||||||||||||||||||||||||||||||| | |||||||| |     |||||||||||||||||||||||||||||| ||||||||||| |||| |||    
T  5620568 aatattattttgtacgtacattttaatttcccgtcatatcctgg-----tactttaatttgcaattggatgcaaaaacaggaaaaattctcctagaaaac 5620662  T
Q  422 cagtgatgtctgcactggtctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagtt 521  Q
    |||||  | ||||||||||   | | |||||| ||||| ||||| |||||||||||||||||||||||||||||   || || ||  | ||  ||| |||    
T  5620663 cagtgcagactgcactggttctgctaactggtgtgaacaacagtcaactgccgctggtgccagcggttgttaac---tgccgacgtatcattgaacggtt 5620759  T
Q  522 cttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagttttcattgt 581  Q
     ||||||||||||| | ||||||  ||| |||||||||||||||| ||||||||||||||    
T  5620760 gttaactgccgctgggggcatttacgtagtttacttgtgtcaataggaagttttcattgt 5620819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 15 - 317
Target Start/End: Original strand, 33523383 - 33523686
Alignment:
Q  15 gatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcg 114  Q
    |||| ||||||||||  ||||||||||||||||||  ||| |||||||||||| |||||||||||||| |||||||| || ||||| |||||| | |||     
T  33523383 gatgtggtgcatataactgatgatattgtggccaggaaagacgagatgactaaggaggagattgtccaggaggtgatacgaatagccagtactggccgcc 33523482  T
Q  115 ctgcccttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgattattattaggnnnnnnnnnnnnnnnnnnngacta 214  Q
    |||||||||| ||||||||||| |||||||||||||||||| ||||| |||| ||| | || ||||||| ||||||                   |||||    
T  33523483 ctgcccttacatatcagattgctaggcggcgcagggggcagcggcagggtagacagtagggttgattatgattaggctttttttatgtacttttggacta 33523582  T
Q  215 tgatgatgatgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacatacc-tttatattatttcttgcgttttaatttt 313  Q
    |||| ||| |||||||| ||| ||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  33523583 tgattatggtgatgtataattatgacatgttccgtacattttcgtatttctatgacattttccgacataccttttatattatttcttacgttttaatttt 33523682  T
Q  314 atct 317  Q
    ||||    
T  33523683 atct 33523686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 13 - 317
Target Start/End: Complemental strand, 19268931 - 19268624
Alignment:
Q  13 gagatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcg 112  Q
    |||||| ||||||||||| ||||||||||||||| ||  | | |||||||| ||||||||||||||||||||||||||| | |||||| |||||| ||||    
T  19268931 gagatgtggtgcatatagctgatgatattgtggcaaggaacgacgagatgattaaagaggagattgtccaagaggtgattcagatagccagtactggtcg 19268832  T
Q  113 cgctgcccttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgattattattagg--nnnnnnnnnnnnnnnnnnng 210  Q
    | |||||| ||| |||||||||||||||||||||||||||||||||||  |||||||||| || ||||| | ||||||                     |    
T  19268831 ccctgcccatacgtatcagattgccaggcggcgcagggggcagaggcatggtaggcagcagggttgattctgattaggctttttttttatgtattttttg 19268732  T
Q  211 actatgatgatgatgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacatacc-tttatattatttcttgcgttttaa 309  Q
    |||||||||||| |||||||| ||| ||||||||||||||||||||  |||||||||||||||||| ||  |||| ||||||||||||||||||||||||    
T  19268731 actatgatgatggtgatgtataattatgacatgttccgtacattttcgtatttctatgacattttcggatgtaccttttatattatttcttgcgttttaa 19268632  T
Q  310 ttttatct 317  Q
    ||||||||    
T  19268631 ttttatct 19268624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 13 - 190
Target Start/End: Original strand, 5620264 - 5620441
Alignment:
Q  13 gagatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcg 112  Q
    |||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||   |||||||||    
T  5620264 gagatgtggtgcatatagttgacgatattgtggacagacaagccgagatgactaaagaagagattgtccaggaggtgatgcggatagccgatactagtcg 5620363  T
Q  113 cgctgcccttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgattattattagg 190  Q
    | |||||||||| ||||||||||||||||||||||||| || ||||||   ||||||||| || ||||||| ||||||    
T  5620364 ccctgcccttacgtatcagattgccaggcggcgcagggagccgaggcatgctaggcagcagggttgattatgattagg 5620441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 210 - 335
Target Start/End: Original strand, 2946273 - 2946400
Alignment:
Q  210 gactatgatgatgatgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacatacc-tttatattatttcttgcgtttta 308  Q
    ||||||||| ||| |||| ||| ||| |||||||||||||| |||||| |||||||||||||||| |||||||||| ||||||||||||||||| |||||    
T  2946273 gactatgatcatggtgatatataattatgacatgttccgtatattttggtatttctatgacatttcccgacataccttttatattatttcttgcatttta 2946372  T
Q  309 attttat-ctgttaaatattattttgta 335  Q
    ||||||| || |||||||||||||||||    
T  2946373 attttatcctattaaatattattttgta 2946400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 2946183 - 2946241
Alignment:
Q  15 gatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagagga 73  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2946183 gatgtggtgcatatagttgatgatattgtggccaggcaagccgagatgactaaagagga 2946241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 13 - 190
Target Start/End: Original strand, 23058647 - 23058827
Alignment:
Q  13 gagatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcg 112  Q
    |||||| |||||| |||| |||||||||||||||||     |  ||||||||||||||||||||||| || |||||| | ||||| |  | |||| ||||    
T  23058647 gagatgtggtgcagatagctgatgatattgtggccatgagcggtgagatgactaaagaggagattgttcatgaggtgtttcggattggcactactggtcg 23058746  T
Q  113 c---gctgcccttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgattattattagg 190  Q
    |   ||||||||||| |||| |||| |||||  ||||||| ||||||||||  |||||||||| || ||||| ||||||||    
T  23058747 ccctgctgcccttacgtatcggatttccaggtagcgcaggtggcagaggcatcgtaggcagcagggttgattcttattagg 23058827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 210 - 336
Target Start/End: Original strand, 23058854 - 23058979
Alignment:
Q  210 gactatgatgatgatgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacatacc-tttatattatttcttgcgtttta 308  Q
    ||||||||||||| || ||||||||| ||||||||| ||| |  |||  ||||||||||||||||| ||   |||| |||||||||||||||||| ||||    
T  23058854 gactatgatgatggtgttgtattattatgacatgtttcgtgccgtttcgtatttctatgacatttttcg---taccttttatattatttcttgcgcttta 23058950  T
Q  309 attttatc-tgttaaatattattttgtac 336  Q
     ||||||| ||||||||||||||| ||||    
T  23058951 tttttatcatgttaaatattatttcgtac 23058979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 33522491 - 33522380
Alignment:
Q  13 gagatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcg 112  Q
    |||||| ||||||||||| |||||||||||| |||||| | |||||   ||||||| |||||||| |||| ||||| ||||| ||||   ||||||||||    
T  33522491 gagatgtggtgcatatagctgatgatattgttgccagaaaggccgacgggactaaaaaggagattttccaggaggttatgcgaatagtcggtactagtcg 33522392  T
Q  113 cgctgcccttac 124  Q
    |  |||||||||    
T  33522391 ccttgcccttac 33522380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 462 - 498
Target Start/End: Original strand, 29266932 - 29266968
Alignment:
Q  462 cagttaactgccgctggtgccagcggttgttaactgt 498  Q
    ||||||||||||||||| |||||||||||||||||||    
T  29266932 cagttaactgccgctggagccagcggttgttaactgt 29266968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 497
Target Start/End: Original strand, 22868342 - 22868385
Alignment:
Q  455 tgaacgacagttaactgccgct-ggtgccagcggttgttaactg 497  Q
    |||||||||||||||||||||| ||| |||||||||||||||||    
T  22868342 tgaacgacagttaactgccgctgggttccagcggttgttaactg 22868385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 307
Target Start/End: Complemental strand, 33522304 - 33522261
Alignment:
Q  265 tatgacattttccgacataccttt-atattatttcttgcgtttt 307  Q
    ||||||||||||| |||||||||| |||||||||||||||||||    
T  33522304 tatgacattttccaacataccttttatattatttcttgcgtttt 33522261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 369 - 397
Target Start/End: Original strand, 2946413 - 2946441
Alignment:
Q  369 tttactttaatttgcaattggatgcaaaa 397  Q
    |||||||||||||||||||||||||||||    
T  2946413 tttactttaatttgcaattggatgcaaaa 2946441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 462 - 498
Target Start/End: Complemental strand, 17127012 - 17126976
Alignment:
Q  462 cagttaactgccgctggtgccagcggttgttaactgt 498  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  17127012 cagttaactgccgctggtgtcagcggtagttaactgt 17126976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 159; Significance: 2e-84; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 224 - 535
Target Start/End: Complemental strand, 44115893 - 44115599
Alignment:
Q  224 tgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacatacctttatattatttcttgcgttttaattttatctgttaaa 323  Q
    |||||||| ||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  44115893 tgatgtataattatgacatgttccgtacattttggtatttctatgacattttccaacatacctttatattatttcttgtgttttaattttatctgttaaa 44115794  T
Q  324 tattattttgtacgtacattttaatttcctgacatatcctagctgtttactttaatttgcaattggatgcaaaaacatgaaaaattctcttagataacca 423  Q
    |||||||||| |||||| ||||||||||| ||||||||||  ||||||||||||||||||||||||||| ||||||| |||||||||||   ||||||      
T  44115793 tattattttgcacgtacgttttaatttcccgacatatcctgactgtttactttaatttgcaattggatgtaaaaacaagaaaaattctcccggataac-- 44115696  T
Q  424 gtgatgtctgcactggtctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttct 523  Q
                ||| |||||||||| |||||||||| ||||||||| ||| ||||||||||||||||||||   || |||||||||| ||||||||| |    
T  44115695 ------------ctgatctagtttaccggtatgaacggcagttaactaccgttggtgccagcggttgttaac---tgccggcgctttacccaacagttgt 44115611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 20477793 - 20477618
Alignment:
Q  15 gatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcg 114  Q
    |||| ||||||||| | |||||||||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||     
T  20477793 gatgtggtgcatattgctgatgatattgtggccaggcatgccgagatgactaaagaggagatcgtccaggaggtgatgcggatagctagtactagtcgcc 20477694  T
Q  115 ctgcccttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgattattattagg 190  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||| ||||| | ||||||||||||||||||||    
T  20477693 ctgcccttacttatcatattgcgaggcggcgcagggggcagaggcagggtaggaaacatggctgattattattagg 20477618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 224 - 586
Target Start/End: Original strand, 41270009 - 41270371
Alignment:
Q  224 tgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacatacc-tttatattatttcttgcgttttaattttatctgttaa 322  Q
    |||||||| ||| ||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||    
T  41270009 tgatgtataattatgacatgttccgtacattttggtatttatatgacattttccgacataccttttatattatttcttgcgttttaattttttatgttaa 41270108  T
Q  323 atattattttgt--acgtacattttaatttcctgacatatcctagctgtttactttaatttgcaattggatgcaaaaacatgaaaaattctcttagataa 420  Q
    ||||||||||||  |||||||||||||||||| ||||||||||   | ||||||||||||| |||||| ||||||||||| |  ||| |  ||   | ||    
T  41270109 atattattttgtacacgtacattttaatttcccgacatatcctgattatttactttaattttcaattgtatgcaaaaacaggccaaagttcctggaaaaa 41270208  T
Q  421 ccagtgatgtctgcactggtctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagt 520  Q
    ||||||  |  ||||||||| | ||| ||| || |||||| || |||||||||||||||| ||| ||||||||||   ||||||||  | ||  | | ||    
T  41270209 ccagtgcagagtgcactggttttgttaactagtgtgaacggcaattaactgccgctggtgtcagtggttgttaac---tgtcggcgtatcatgaagcggt 41270305  T
Q  521 tcttaactgccgct-gagagcatttcagtattttacttgtgtcaatatgaagttttcattgttaaaa 586  Q
    | ||||||| |||| ||| ||||||  |||||||||||||||||||||||| |||||| ||| ||||    
T  41270306 tgttaactgtcgctagag-gcatttacgtattttacttgtgtcaatatgaaattttcactgtcaaaa 41270371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 41269807 - 41269982
Alignment:
Q  15 gatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcg 114  Q
    |||| ||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||     
T  41269807 gatgtggtgcatatagctgatgatattgtggccaggcaaaccgagatgactaaagaggagattgtccaagaggtgatgcggatagccggtactggtcgcc 41269906  T
Q  115 ctgcccttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgattattattagg 190  Q
    |||||||||| ||||||||||||||||||||||||||||  |||||   ||||||||| || ||||||| ||||||    
T  41269907 ctgcccttacgtatcagattgccaggcggcgcagggggccaaggcatgctaggcagcagggttgattatgattagg 41269982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 42095943 - 42095767
Alignment:
Q  13 gagatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcg 112  Q
    |||||| |||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||   ||| | ||||    
T  42095943 gagatgtggtgcatatatttgatgatattgtggctaggcaagccgagatgactaaagaggagattgtccaggaggtgatgcggatagtcggtattggtcg 42095844  T
Q  113 cgctgcccttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgattattattag 189  Q
    | |||||||||| |||||||||||||||||||||||||||| ||||||   ||||||||| || | ||||| |||||    
T  42095843 ccctgcccttacgtatcagattgccaggcggcgcagggggccgaggcatgctaggcagcaaggttcattatgattag 42095767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 44116094 - 44115956
Alignment:
Q  15 gatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcg 114  Q
    |||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||  ||||  |||||     
T  44116094 gatgtggtgcatatagctgatgatattgtggccaggcaagccgagatgactaaagaggagattgtccaggaggtgatgcggatagccggtaccggtcgcc 44115995  T
Q  115 ctgcccttacttatcagattgccaggcggcgcagggggc 153  Q
    |||||||||| ||||||||||| ||| ||||||||||||    
T  44115994 ctgcccttacgtatcagattgctaggtggcgcagggggc 44115956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 15 - 157
Target Start/End: Complemental strand, 8317216 - 8317074
Alignment:
Q  15 gatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcg 114  Q
    |||| ||||||||| | ||| |||||||||||||  ||| ||||||| |||||| ||||||||||||| ||||||||||||||||||| ||||||||||     
T  8317216 gatgtggtgcatattgctgacgatattgtggccaagcaaaccgagatcactaaataggagattgtccaggaggtgatgcggatagctactactagtcgcc 8317117  T
Q  115 ctgcccttacttatcagattgccaggcggcgcagggggcagag 157  Q
    ||||||||||||||||||||||||||||||||| | |||||||    
T  8317116 ctgcccttacttatcagattgccaggcggcgcatgaggcagag 8317074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 215 - 338
Target Start/End: Complemental strand, 42095741 - 42095617
Alignment:
Q  215 tgatgatgatgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacatacc-tttatattatttcttgcgttttaatttt 313  Q
    |||| ||| |||||||| ||  ||||||||||||||||||||  |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  42095741 tgatcatggtgatgtataataatgacatgttccgtacattttattatttctatgacattttctgacataccatttatattatttcttgcgttttaatttt 42095642  T
Q  314 atctgttaaatattattttgtacgt 338  Q
    |||||| ||||||||||||||||||    
T  42095641 atctgtcaaatattattttgtacgt 42095617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 210 - 330
Target Start/End: Complemental strand, 18701139 - 18701017
Alignment:
Q  210 gactatgatgatgatgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacatacc-tttatattatttcttgcgtttta 308  Q
    ||||||||||| | |||||||||||| ||||||||| ||||||||||  ||||||||||||||||||  ||||||| ||||||||||||||||||| |||    
T  18701139 gactatgatgaaggtgatgtattattatgacatgtttcgtacattttagtatttctatgacattttcgtacataccttttatattatttcttgcgtatta 18701040  T
Q  309 attttatc-tgttaaatattatt 330  Q
    |||||||| ||||||||||||||    
T  18701039 attttatcatgttaaatattatt 18701017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 369 - 496
Target Start/End: Complemental strand, 42095607 - 42095480
Alignment:
Q  369 tttactttaatttgcaattggatgcaaaaacatgaaaaattctcttagataaccagtgatgtctgcactggtctagtttactggtatgaacgacagttaa 468  Q
    ||||||||||||| |||||||||||| |||||||| |||||  ||   | ||  ||||  | |||||||||||| ||||||| || |||||| |||||||    
T  42095607 tttactttaatttacaattggatgcataaacatgacaaatttcctggaaaaaagagtgcagactgcactggtcttgtttactagtgtgaacggcagttaa 42095508  T
Q  469 ctgccgctggtgccagcggttgttaact 496  Q
    ||| | ||||||||||||||||||||||    
T  42095507 ctgtcactggtgccagcggttgttaact 42095480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 58 - 183
Target Start/End: Complemental strand, 18701302 - 18701177
Alignment:
Q  58 agatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcgctgcccttacttatcagattgccaggcggcgcagggggcagag 157  Q
    |||||||||||||||| | |||  | |||||||| ||||| |  |||||  ||||| |||||||||| ||||||||||||||||  ||||||||||||||    
T  18701302 agatgactaaagaggatactgtttaggaggtgattcggattggcagtaccggtcgccctgcccttacgtatcagattgccaggcatcgcagggggcagag 18701203  T
Q  158 gcagagtaggcagcatggctgattat 183  Q
    |||  |||| ||| | ||||||||||    
T  18701202 gcatcgtagacagtagggctgattat 18701177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 444 - 500
Target Start/End: Original strand, 45120654 - 45120710
Alignment:
Q  444 gtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactgttg 500  Q
    |||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||    
T  45120654 gtttactggtgtgaacggcagttaactgccgctggtgccagcggctgttaactgttg 45120710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 469 - 576
Target Start/End: Original strand, 20495488 - 20495591
Alignment:
Q  469 ctgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttcttaactgccgctgagagcatttcagtattttacttgtgtcaatatg 568  Q
    |||||||||||||||||||||||||||   ||||||||  | ||  | || || ||||||||||| | |||||| | ||||||||||||||||||||| |    
T  20495488 ctgccgctggtgccagcggttgttaac---tgtcggcgtatcattgagcaattgttaactgccgc-gggagcatgttagtattttacttgtgtcaatacg 20495583  T
Q  569 aagttttc 576  Q
    ||||||||    
T  20495584 aagttttc 20495591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 445 - 497
Target Start/End: Original strand, 23231232 - 23231284
Alignment:
Q  445 tttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactg 497  Q
    |||||| || |||||||||||| |||||||||||||||||||||||| |||||    
T  23231232 tttactagtgtgaacgacagtttactgccgctggtgccagcggttgtcaactg 23231284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 523 - 575
Target Start/End: Complemental strand, 234003 - 233951
Alignment:
Q  523 ttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagtttt 575  Q
    |||||| ||||| ||||||||| |||||||||||||||||| | |||||||||    
T  234003 ttaactaccgctaagagcatttaagtattttacttgtgtcattctgaagtttt 233951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 523 - 575
Target Start/End: Complemental strand, 710414 - 710362
Alignment:
Q  523 ttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagtttt 575  Q
    |||||| ||||| ||||||||| |||||||||||||||||| | |||||||||    
T  710414 ttaactaccgctaagagcatttaagtattttacttgtgtcattctgaagtttt 710362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 523 - 575
Target Start/End: Complemental strand, 747626 - 747574
Alignment:
Q  523 ttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagtttt 575  Q
    |||||| ||||| ||||||||| |||||||||||||||||| | |||||||||    
T  747626 ttaactaccgctaagagcatttaagtattttacttgtgtcattctgaagtttt 747574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 523 - 575
Target Start/End: Complemental strand, 871521 - 871469
Alignment:
Q  523 ttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagtttt 575  Q
    |||||| ||||| ||||||||| |||||||||||||||||| | |||||||||    
T  871521 ttaactaccgctaagagcatttaagtattttacttgtgtcattctgaagtttt 871469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 541 - 581
Target Start/End: Original strand, 40494103 - 40494143
Alignment:
Q  541 atttcagtattttacttgtgtcaatatgaagttttcattgt 581  Q
    |||| ||||||||||||||||||||| ||||||||||||||    
T  40494103 atttaagtattttacttgtgtcaataggaagttttcattgt 40494143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 538 - 596
Target Start/End: Original strand, 44509972 - 44510029
Alignment:
Q  538 agcatttcagtattttacttgtgtcaatatgaagttttcattgttaaaagcaattttca 596  Q
    |||||||  |||||||| ||||||||||||||||||||||| | || ||||||||||||    
T  44509972 agcatttacgtattttatttgtgtcaatatgaagttttcatcg-tagaagcaattttca 44510029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 314
Target Start/End: Complemental strand, 8316619 - 8316554
Alignment:
Q  250 acattttgatatttctatgacattttccgacatac-ctttatattatttcttgcgttttaatttta 314  Q
    |||||||  |||||||||||||||| |  || |||  |||||||||||||||||||||||||||||    
T  8316619 acatttttgtatttctatgacatttacgtacgtacgttttatattatttcttgcgttttaatttta 8316554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 314
Target Start/End: Complemental strand, 20477563 - 20477498
Alignment:
Q  250 acattttgatatttctatgacattttccgacatac-ctttatattatttcttgcgttttaatttta 314  Q
    |||||||  |||||||||||||||| |  || |||  |||||||||||||||||||||||||||||    
T  20477563 acattttcgtatttctatgacatttacgtacgtacgttttatattatttcttgcgttttaatttta 20477498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 601
Target Start/End: Complemental strand, 42095469 - 42095405
Alignment:
Q  539 gcatttcagtattttacttgtgtcaatatgaagttttcattgt--taaaagcaattttcataaat 601  Q
    |||||| |||||||||||||||||||||  || ||||||||||  ||||| |||||||| |||||    
T  42095469 gcattttagtattttacttgtgtcaatagaaaattttcattgtcataaaatcaattttcttaaat 42095405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 431 - 498
Target Start/End: Original strand, 26702796 - 26702864
Alignment:
Q  431 ctgcactggtctagtttactggtatgaacgacagttaactgccgctgg-tgccagcggttgttaactgt 498  Q
    ||||||||||   ||| |||||| |||||| ||||||||||||||||| | | ||||||||||||||||    
T  26702796 ctgcactggttctgttaactggtgtgaacggcagttaactgccgctggattctagcggttgttaactgt 26702864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 134; Significance: 2e-69; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 224 - 597
Target Start/End: Original strand, 45034820 - 45035190
Alignment:
Q  224 tgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacataccttt-atattatttcttgcgttttaattttatctgttaa 322  Q
    |||||||| ||| |||||||||||||| |||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  45034820 tgatgtataattatgacatgttccgtatattttggtatttgtatgacattttccgacataccttttatattatttcttgcgttttaattttatctgttaa 45034919  T
Q  323 atattattttgtacgtacattttaatttcctgacatatcctagctgtttactttaatttgcaattggatgcaaaaacatgaaaaattctcttagataacc 422  Q
    ||||||||||||   ||| ||||||||||| |||||||||| | | |||||||||||||||||||||||||||||||| |  ||| |  ||   | ||||    
T  45034920 atattattttgt---tacgttttaatttcccgacatatcctggttatttactttaatttgcaattggatgcaaaaacaggccaaagttcctggaaaaacc 45035016  T
Q  423 agtgatgtctgcactggtctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttc 522  Q
     |||     ||||||||| | ||| ||| |  |||||| |||||||||| |||||||||||||||||||||||   ||||||||  | ||  ||| |||     
T  45035017 cgtgcatagtgcactggttttgttaactagcgtgaacggcagttaactggcgctggtgccagcggttgttaac---tgtcggcgtatcattgaacggttg 45035113  T
Q  523 ttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagttttcattgtt--aaaagcaattttcat 597  Q
    |||| |||||||| |  |||||  |||||||||||||||||||| |||||||||||||||  ||||| |||||||||    
T  45035114 ttaattgccgctggggacatttacgtattttacttgtgtcaataggaagttttcattgttagaaaagtaattttcat 45035190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 13 - 190
Target Start/End: Original strand, 55150781 - 55150958
Alignment:
Q  13 gagatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcg 112  Q
    |||||| ||||||||| | ||| |||||| ||| ||| |||||||||| ||||||||||||||| ||| | ||||||||||||||| |||||||||||||    
T  55150781 gagatgtggtgcatattgctgacgatattatggtcaggcaagccgagaggactaaagaggagatcgtctaggaggtgatgcggataactagtactagtcg 55150880  T
Q  113 cgctgcccttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgattattattagg 190  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  55150881 ccctgcccttacttatcagattgccaggcggcgcagggggcagaggcagggtaggcagcatgactgattattattagg 55150958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 237 - 402
Target Start/End: Original strand, 48164965 - 48165131
Alignment:
Q  237 tgacatgttccgtacattttgatatttctatgacattttccgacataccttt-atattatttcttgcgttttaattttatctgttaaatattattttgta 335  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||| |    
T  48164965 tgacatgttccgtacattttggtatttgtatgacattttccgacataccttttatattatcttttgcgttttaattttatctgttaaatattattttgaa 48165064  T
Q  336 cgtacattttaatttcctgacatatcctagctgtttactttaatttgcaattggatgcaaaaacatg 402  Q
    |||   ||||||| ||| |||||||||| | | ||||||||||||||||||||||||||||||||||    
T  48165065 cgtttgttttaatatcccgacatatcctggttatttactttaatttgcaattggatgcaaaaacatg 48165131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 224 - 400
Target Start/End: Complemental strand, 18942972 - 18942795
Alignment:
Q  224 tgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacataccttta-tattatttcttgcgttttaattttatctgttaa 322  Q
    |||| ||| ||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  18942972 tgatttataattatgacatgttccgtacattttggtatttgtatgacattttccgacataccttttgtattatttcttgcgttttaattttatctgttaa 18942873  T
Q  323 atattattttgtacgtacattttaatttcctgacatatcctagctgtttactttaatttgcaattggatgcaaaaaca 400  Q
    |||||||||||||||||| | ||||||||| |||||||||| | | || |||||||||| |||  |||||||||||||    
T  18942872 atattattttgtacgtacgtgttaatttcccgacatatccttgttattaactttaatttccaacaggatgcaaaaaca 18942795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 228 - 411
Target Start/End: Complemental strand, 177792 - 177607
Alignment:
Q  228 gtattattgtgacatgttccgtacattttgatatttctatgacattttccgacataccttt-atattatttcttgcgttttaattttatctgttaaatat 326  Q
    |||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  177792 gtataattatgacatgttccgtacattttggtatttctatgacattttccgacacaccttttatattatttcttgcgttttaattttatctgttaaatat 177693  T
Q  327 tattttgtacgtacattttaatttcctgacatatcctag-ctgtttactttaatttgcaattggatgcaaaaacatgaaaaattct 411  Q
    |||||||||| ||| |||||||||||  ||||||||| | |  || |||||||||||||||| |||| | ||||| | ||||||||    
T  177692 tattttgtacatacgttttaatttcccaacatatcctggtcccttaactttaatttgcaatttgatggataaacagggaaaattct 177607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 224 - 363
Target Start/End: Original strand, 23585220 - 23585358
Alignment:
Q  224 tgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacatacctttatattatttcttgcgttttaattttatctgttaaa 323  Q
    |||||||| | | ||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  23585220 tgatgtataactatgacatgttccgtacatttttgtatttctatgacattttcctacatacctttatattatttcttgcgttttaattttatctg-taaa 23585318  T
Q  324 tattattttgtacgtacattttaatttcctgacatatcct 363  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  23585319 tattattttgtacgtacgttttaatttcccgacatatcct 23585358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 224 - 363
Target Start/End: Original strand, 23600043 - 23600181
Alignment:
Q  224 tgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacatacctttatattatttcttgcgttttaattttatctgttaaa 323  Q
    |||||||| | | ||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  23600043 tgatgtataactatgacatgttccgtacatttttgtatttctatgacattttcctacatacctttatattatttcttgcgttttaattttatctg-taaa 23600141  T
Q  324 tattattttgtacgtacattttaatttcctgacatatcct 363  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  23600142 tattattttgtacgtacgttttaatttcccgacatatcct 23600181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 15 - 160
Target Start/End: Original strand, 52561036 - 52561181
Alignment:
Q  15 gatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcg 114  Q
    |||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||  ||||| |||||     
T  52561036 gatgtggtgcatatagctgatgatattgtggccaggcaagccgagatgactaaagaggagattgtccaggaggtgatgcggatagccggtactggtcgcc 52561135  T
Q  115 ctgcccttacttatcagattgccaggcggcgcagggggcagaggca 160  Q
    |||||||||| || ||||||| ||||||||||||||||| ||||||    
T  52561136 ctgcccttacgtaacagattgtcaggcggcgcagggggccgaggca 52561181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 177999 - 177823
Alignment:
Q  13 gagatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcg 112  Q
    |||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||  ||||| ||||    
T  177999 gagatgtggtgcatatagctgatgatattgtggccaggcaagccgagatgactaaagagaagattgtccaggaggtgatgcggatagccggtactggtcg 177900  T
Q  113 cgctgcccttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgattattattag 189  Q
    | |||||||||| |||||||||||||||||||  ||||||| ||||||   |||||| || || ||||||| |||||    
T  177899 ccctgcccttacgtatcagattgccaggcggcatagggggccgaggcatgctaggcaacagggttgattatgattag 177823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 13 - 190
Target Start/End: Original strand, 48164751 - 48164928
Alignment:
Q  13 gagatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcg 112  Q
    |||||| ||||||||||  ||||||||||||| ||||  |||||||||||||||||||||| |||||||| |||||||||||||||||  ||||| ||||    
T  48164751 gagatgtggtgcatataactgatgatattgtgaccaggaaagccgagatgactaaagaggatattgtccaggaggtgatgcggatagccggtactggtcg 48164850  T
Q  113 cgctgcccttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgattattattagg 190  Q
    | |||||||||| |||||||||| ||||||||||||||||  ||||||   ||||||||| || ||||||| ||||||    
T  48164851 ccctgcccttacgtatcagattgtcaggcggcgcagggggtcgaggcatgctaggcagcagggttgattatgattagg 48164928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 224 - 339
Target Start/End: Original strand, 18911992 - 18912108
Alignment:
Q  224 tgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacataccttt-atattatttcttgcgttttaattttatctgttaa 322  Q
    |||||||| ||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  18911992 tgatgtataattatgacatgttccgtacattttggtatttgtatgacattttccgacataccttttatattatatcttgcgttttaattttatctgttaa 18912091  T
Q  323 atattattttgtacgta 339  Q
    |||||||||||||||||    
T  18912092 atattattttgtacgta 18912108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 18943169 - 18942999
Alignment:
Q  20 ggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcgctgcc 119  Q
    ||||||||||  ||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||  ||||| ||||| |||||    
T  18943169 ggtgcatatacctgacgatattgtggccaggcaagccgagatgactaaagaggagattgtccaggaggtgatacggatagccggtactggtcgccctgcc 18943070  T
Q  120 cttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgattattattagg 190  Q
    ||||| ||||| ||||| |||||| ||||||||  ||||||   ||||||||| || ||||||| ||||||    
T  18943069 cttacgtatcaaattgcgaggcggtgcagggggtcgaggcatgctaggcagcagggttgattatgattagg 18942999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 45034625 - 45034795
Alignment:
Q  20 ggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcgctgcc 119  Q
    ||||||||||| |||||||||||||||||| ||||| ||||||||||| ||  |||||||||| ||||||||||||||| |  |||||  |||| | |||    
T  45034625 ggtgcatatagctgatgatattgtggccaggcaagctgagatgactaatgaaaagattgtccaggaggtgatgcggatatccggtactgatcgccccgcc 45034724  T
Q  120 cttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgattattattagg 190  Q
    ||||| ||||| |||||||||||||||||||||| ||||||   ||||||||| || ||||||| ||||||    
T  45034725 cttacgtatcaaattgccaggcggcgcagggggccgaggcatgctaggcagcagggttgattatgattagg 45034795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 98 - 190
Target Start/End: Original strand, 10809 - 10901
Alignment:
Q  98 agctagtactagtcgcgctgcccttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgattattattagg 190  Q
    ||||||| || ||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  10809 agctagtgctggtcgccctgcccttacttatcagattgtcaggcggcgcagggggcagaggcagggtaggcagcagggctgattattattagg 10901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 432 - 595
Target Start/End: Original strand, 23585394 - 23585555
Alignment:
Q  432 tgcactggtctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttcttaactgcc 531  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| |  |||||||||||||||   ||||| ||||||| ||||||||| |||||||||    
T  23585394 tgcactggtctagtttactggtattaacggcagttaactgccgcttgatccagcggttgttaac---tgtcgacgctttacccaacagttgttaactgcc 23585490  T
Q  532 gctgagagcatttcagtattttacttgtgtcaatatgaagttttcattgt--taaaagcaattttc 595  Q
    | || | |||||| | |||||||||||| |||||||||| ||||| ||||   |||||||||||||    
T  23585491 gttg-gggcattttaatattttacttgtctcaatatgaaattttctttgtcagaaaagcaattttc 23585555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 432 - 595
Target Start/End: Original strand, 23600217 - 23600378
Alignment:
Q  432 tgcactggtctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttcttaactgcc 531  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| |  |||||||||||||||   ||||| ||||||| ||||||||| |||||||||    
T  23600217 tgcactggtctagtttactggtattaacggcagttaactgccgcttgatccagcggttgttaac---tgtcgacgctttacccaacagttgttaactgcc 23600313  T
Q  532 gctgagagcatttcagtattttacttgtgtcaatatgaagttttcattgt--taaaagcaattttc 595  Q
    | || | |||||| | |||||||||||| |||||||||| ||||| ||||   |||||||||||||    
T  23600314 gttg-gggcattttaatattttacttgtctcaatatgaaattttctttgtcagaaaagcaattttc 23600378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 9135 - 9224
Alignment:
Q  15 gatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagt 104  Q
    |||| ||||||||| | |||||||||||||||||| ||||||||||||| || | ||||||||||||| |||||||||||||||||||||    
T  9135 gatgtggtgcatattgctgatgatattgtggccaggcaagccgagatgagtagaaaggagattgtccaggaggtgatgcggatagctagt 9224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 211 - 309
Target Start/End: Original strand, 52561236 - 52561335
Alignment:
Q  211 actatgatgatgatgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacatacc-tttatattatttcttgcgttttaa 309  Q
    ||||||||||   |||||||| ||| ||||||||||||||||||||  |||||||||||||||||| ||| |||| ||||||||||||||||||||||||    
T  52561236 actatgatgaccgtgatgtataattatgacatgttccgtacattttcttatttctatgacattttcggacgtaccttttatattatttcttgcgttttaa 52561335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 18908147 - 18908232
Alignment:
Q  15 gatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagc 100  Q
    |||| ||||||||||| ||| |||| ||||||||| |||||||| ||| ||||||||||||||||||| |||||||||||||||||    
T  18908147 gatgtggtgcatatagctgacgatactgtggccaggcaagccgaaatgcctaaagaggagattgtccaggaggtgatgcggatagc 18908232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 54 - 190
Target Start/End: Complemental strand, 13825582 - 13825446
Alignment:
Q  54 gccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcgctgcccttacttatcagattgccaggcggcgcagggggc 153  Q
    |||||||||||||||| |||| | || || ||| ||||  |||| | ||||||||||||| |||||||||  |||| ||||||||||| |||||||||||    
T  13825582 gccgagatgactaaagcggagctggtgcaggagatgatttggattgatagtactagtcgccctgcccttatgtatcggattgccaggcagcgcagggggc 13825483  T
Q  154 agaggcagagtaggcagcatggctgattattattagg 190  Q
    | |||||   ||||||| | || ||||||| ||||||    
T  13825482 ataggcaccataggcagtagggttgattatcattagg 13825446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 224 - 316
Target Start/End: Complemental strand, 54315298 - 54315205
Alignment:
Q  224 tgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacataccttt-atattatttcttgcgttttaattttatc 316  Q
    |||||||||||| ||||||  | ||||  || |||||||||||||| |||| |  |||||||||| ||||||||||||||||||||||||||||    
T  54315298 tgatgtattattatgacattattcgtatcttgtgatatttctatgatatttacgtacataccttttatattatttcttgcgttttaattttatc 54315205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 109 - 190
Target Start/End: Original strand, 18911884 - 18911965
Alignment:
Q  109 gtcgcgctgcccttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgattattattagg 190  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||  | |||   ||||||||| || ||||||| ||||||    
T  18911884 gtcgccctgcccttacatatcagattgccaggcggcgcagggggccaaagcatgctaggcagcaaggttgattatgattagg 18911965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 444 - 497
Target Start/End: Original strand, 48165159 - 48165212
Alignment:
Q  444 gtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactg 497  Q
    ||| ||||||||||||| ||||||||||||||||||| |||||||| |||||||    
T  48165159 gttaactggtatgaacggcagttaactgccgctggtgtcagcggttattaactg 48165212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 539 - 604
Target Start/End: Original strand, 18912281 - 18912348
Alignment:
Q  539 gcatttcagtattttacttgtgtcaatatgaagttttcattgt--taaaagcaattttcataaattta 604  Q
    |||||| ||||||||||||||||||||||||| |||||| |||   |||||||||||||| |||||||    
T  18912281 gcattttagtattttacttgtgtcaatatgaaattttcactgtcagaaaagcaattttcacaaattta 18912348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 250 - 332
Target Start/End: Complemental strand, 13825380 - 13825300
Alignment:
Q  250 acattttgatatttctatgacattttccgacataccttt-atattatttcttgcgttttaattttatc-tgttaaatattatttt 332  Q
    |||||||  ||||||||||||||||||    |||||||| ||||||||||||| |||||| ||||||| ||||||||||||||||    
T  13825380 acattttcgtatttctatgacattttc----ataccttttatattatttcttgtgttttatttttatcttgttaaatattatttt 13825300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 450 - 497
Target Start/End: Complemental strand, 18942744 - 18942697
Alignment:
Q  450 tggtatgaacgacagttaactgccgctggtgccagcggttgttaactg 497  Q
    |||||||||||  |||||||| ||||||||||||||||||||||||||    
T  18942744 tggtatgaacggtagttaacttccgctggtgccagcggttgttaactg 18942697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 465 - 586
Target Start/End: Original strand, 48165206 - 48165324
Alignment:
Q  465 ttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttcttaactgccgctgagagcatttcagtattttacttgtgtcaa 564  Q
    |||||||||||||||||||||||||||||||   |||||||   | ||  ||| ||| |||||||||| ||   ||||||  ||||||||||| ||||||    
T  48165206 ttaactgccgctggtgccagcggttgttaac---tgtcggccaatcatttaacggttgttaactgccgttggaggcatttacgtattttacttatgtcaa 48165302  T
Q  565 tatgaagttttcattgttaaaa 586  Q
    || |||| ||||||||| ||||    
T  48165303 taggaagatttcattgtcaaaa 48165324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 517 - 601
Target Start/End: Complemental strand, 177514 - 177428
Alignment:
Q  517 cagttcttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagttttcattgtt--aaaagcaattttcataaat 601  Q
    ||||| |||||||||  ||  ||||||| |||||||||||| |||||||| |||||||| || |||  |||||||||||||| ||||    
T  177514 cagttgttaactgccaatggaagcattttagtattttacttatgtcaataggaagttttgatggttagaaaagcaattttcagaaat 177428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 523 - 586
Target Start/End: Complemental strand, 52560356 - 52560293
Alignment:
Q  523 ttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagttttcattgttaaaa 586  Q
    |||||||||||||   ||||||  |||||||||||||||||||| |||| ||||||||| ||||    
T  52560356 ttaactgccgctggaggcatttacgtattttacttgtgtcaataggaaggtttcattgtcaaaa 52560293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 160
Target Start/End: Complemental strand, 54315364 - 54315313
Alignment:
Q  109 gtcgcgctgcccttacttatcagattgccaggcggcgcagggggcagaggca 160  Q
    ||||| |||||||||| |||||| ||||||||| |||||| |||||||||||    
T  54315364 gtcgccctgcccttacgtatcagtttgccaggcagcgcagagggcagaggca 54315313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 523 - 576
Target Start/End: Complemental strand, 42989877 - 42989824
Alignment:
Q  523 ttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagttttc 576  Q
    |||||| ||||||| || |||| | ||||||| |||||||||||||||||||||    
T  42989877 ttaactaccgctgaaagtatttaaatattttagttgtgtcaatatgaagttttc 42989824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 541 - 599
Target Start/End: Complemental strand, 44847012 - 44846952
Alignment:
Q  541 atttcagtattttacttgtgtcaatatgaagttttcattgt--taaaagcaattttcataa 599  Q
    |||| |||||||||||||||| ||| ||||||||||| |||   |||||||||||||||||    
T  44847012 atttaagtattttacttgtgttaatgtgaagttttcaatgtcagaaaagcaattttcataa 44846952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 497
Target Start/End: Original strand, 44929361 - 44929402
Alignment:
Q  457 aacgacagttaactgccgctgg-tgccagcggttgttaactg 497  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  44929361 aacgacagttaactgccgctggcttccagcggttgttaactg 44929402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 55150980 - 55151012
Alignment:
Q  210 gactatgatgatgatgatgtattattgtgacat 242  Q
    |||||||||||||||||||||||||| ||||||    
T  55150980 gactatgatgatgatgatgtattattatgacat 55151012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 523 - 596
Target Start/End: Original strand, 55151333 - 55151408
Alignment:
Q  523 ttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagttttcattgt--taaaagcaattttca 596  Q
    ||||||||||||| ||||||||  ||||||||| |||||||||  ||| |||||| |||   ||||||||||||||    
T  55151333 ttaactgccgctgggagcatttaggtattttacctgtgtcaattggaacttttcaatgtcagaaaagcaattttca 55151408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 132; Significance: 3e-68; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 226 - 595
Target Start/End: Original strand, 42014287 - 42014656
Alignment:
Q  226 atgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacataccttt-atattatttcttgcgttttaattttatctgttaaat 324  Q
    |||||| ||| |||||| |||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42014287 atgtataattatgacatattccgtacattttggtatttgtatgacattttccgacataccttttatattatttcttgcgttttaattttatctgttaaat 42014386  T
Q  325 attattttgtacgtacattttaatttcctgacatatcctagctgtttactttaatttgcaattggatgcaaaaacatgaaaaattctcttagataaccag 424  Q
    |||||||||||||||| ||||||||||| || ||||| | | | ||||||||||||||||||||||||||||||||    ||| |  ||   | ||||||    
T  42014387 attattttgtacgtacgttttaatttcccgatatatcatggttatttactttaatttgcaattggatgcaaaaacagaccaaagttcctggaaaaaccag 42014486  T
Q  425 tgatgtctgcactggtctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttctt 524  Q
    ||     |||||| ||   ||| |||||| ||||||||||||||||||| ||||||||| ||||||||||    ||||||||  | ||  ||||||| ||    
T  42014487 tgcatagtgcactagttctgttaactggtgtgaacgacagttaactgccactggtgccaacggttgttaa---atgtcggcgtatcattgaacagttgtt 42014583  T
Q  525 aactgccgctgagagcatttcagtattttacttgtgtcaatatgaagttttcattgt--taaaagcaattttc 595  Q
    ||||||| ||| | ||||||  ||||||||||||||||||||  || ||||||||||   |||||||||||||    
T  42014584 aactgccactgggggcatttacgtattttacttgtgtcaatagaaatttttcattgtcagaaaagcaattttc 42014656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 228 - 400
Target Start/End: Complemental strand, 46526387 - 46526214
Alignment:
Q  228 gtattattgtgacatgttccgtacattttgatatttctatgacattttccgacataccttt-atattatttcttgcgttttaattttatctgttaaatat 326  Q
    |||| ||| ||||||||||| ||||||||| ||||| |||||||||||||||||||||||| |||||| ||||||| |||||||||||||| ||||||||    
T  46526387 gtataattatgacatgttccttacattttggtatttgtatgacattttccgacatacctttcatattagttcttgcattttaattttatctattaaatat 46526288  T
Q  327 tattttgtacgtacattttaatttcctgacatatcctagctgtttactttaatttgcaattggatgcaaaaaca 400  Q
    |||||||||||||| ||||||||||| |||||||||| | | ||| ||||||||| ||||||||||||||||||    
T  46526287 tattttgtacgtacgttttaatttcccgacatatcctggttatttgctttaatttccaattggatgcaaaaaca 46526214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 10554556 - 10554731
Alignment:
Q  15 gatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcg 114  Q
    |||| ||||||||| | ||| |||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||  |||||||||||||||||||     
T  10554556 gatgtggtgcatattggtgacgatattgtggccaggcaagccgagatgactaaagaggagattatccaggaggtgatgtagatagctagtactagtcgcc 10554655  T
Q  115 ctgcccttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgattattattagg 190  Q
    |||||||||||||||| ||||||||||| |||||||| ||||||||| ||||  |||| ||||| |||||||||||    
T  10554656 ctgcccttacttatcaaattgccaggcgacgcaggggccagaggcagggtagatagcagggctggttattattagg 10554731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 46526591 - 46526416
Alignment:
Q  15 gatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcg 114  Q
    |||| ||||||||||||||  ||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||||||||||  |||||||||||     
T  46526591 gatgtggtgcatatagttggcgatattgtggctaggcaagccgagatgactaaagaggagattgtccagtaggtgatgcggatagccggtactagtcgcc 46526492  T
Q  115 ctgcccttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgattattattagg 190  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||   ||||||||| || ||||||| ||||||    
T  46526491 ctgcccttacgtatcagattgccaggcggcgcagggggccgaggcatgctaggcagcagggttgattatgattagg 46526416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 224 - 400
Target Start/End: Complemental strand, 6272826 - 6272649
Alignment:
Q  224 tgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacataccttt-atattatttcttgcgttttaattttatctgttaa 322  Q
    |||||||| ||| ||||||||| ||||||||||| ||||| |||||||||||||||||||| ||| ||||||||| |||||||||||||||| |||||||    
T  6272826 tgatgtataattatgacatgtttcgtacattttggtatttgtatgacattttccgacatactttttatattattttttgcgttttaattttacctgttaa 6272727  T
Q  323 atattattttgtacgtacattttaatttcctgacatatcctagctgtttactttaatttgcaattggatgcaaaaaca 400  Q
    |||||||||| ||||||| ||||||||||| |||||||||| | | ||||| ||||||| |||||| |||||||||||    
T  6272726 atattattttatacgtacgttttaatttcccgacatatcctggttatttacattaatttccaattgaatgcaaaaaca 6272649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 31593767 - 31593941
Alignment:
Q  15 gatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcg 114  Q
    |||| |||||| || | ||| ||||||||||| || |||||||||||||||||||||||||| ||| | ||  ||||||||||||||||||||||||||     
T  31593767 gatgtggtgcaaattgctgacgatattgtggctagccaagccgagatgactaaagaggagatcgtctaggatttgatgcggatagctagtactagtcgcc 31593866  T
Q  115 ctgcccttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgattattattagg 190  Q
    |||||||||||||||||||| |||||||||||| |||| |||||||| |||||||||| |||||||||||||||||    
T  31593867 ctgcccttacttatcagatttccaggcggcgca-ggggtagaggcagggtaggcagcagggctgattattattagg 31593941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 15 - 306
Target Start/End: Original strand, 41964278 - 41964570
Alignment:
Q  15 gatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcg 114  Q
    |||| |||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| |||||||||||||||||  ||||| |||||     
T  41964278 gatgtggtgaatatagttgatgatattgtggtcaggcaagccgagatgactaaagaggagattttccaggaggtgatgcggatagccggtactggtcgcc 41964377  T
Q  115 ctgcccttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgattattattaggnnnnnnnnnnnnnnnnnnngacta 214  Q
    |||||||||| |||||||||||||| || |||||||||  ||||||   ||||||| | || ||||||| |||| |                    |||     
T  41964378 ctgcccttacgtatcagattgccagacgacgcagggggtcgaggcatgctaggcagtagggttgattatgattaagctttttttatgtacttttttactg 41964477  T
Q  215 tgatgatgatgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacatacc-tttatattatttcttgcgttt 306  Q
    |||||||  |||||||| ||| ||||||||||||||||||||  |||||||||||||||||| ||| |||| |||||||||||||||||||||    
T  41964478 tgatgatcgtgatgtataattatgacatgttccgtacattttcttatttctatgacattttcggacgtaccttttatattatttcttgcgttt 41964570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 15 - 160
Target Start/End: Complemental strand, 6273029 - 6272884
Alignment:
Q  15 gatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcg 114  Q
    |||| ||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||  ||||| ||| |     
T  6273029 gatgtggtgcatatagttgacgatattgtggccaggcaagacgagatgactaaagaggagattgtccaggaggtgatgcggatagccggtactggtcacc 6272930  T
Q  115 ctgcccttacttatcagattgccaggcggcgcagggggcagaggca 160  Q
    |||||||||| ||||||||| |||||||||||||||||| ||||||    
T  6272929 ctgcccttacgtatcagatttccaggcggcgcagggggccgaggca 6272884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 13 - 190
Target Start/End: Original strand, 42014081 - 42014258
Alignment:
Q  13 gagatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcg 112  Q
    |||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||| |||| |||||||||||| ||||  ||||| ||||    
T  42014081 gagatgtggtgcatatagctgatgatattgtggccaggcaagccgagatgactaaagagaagattttccaggaggtgatgcgggtagccggtactggtcg 42014180  T
Q  113 cgctgcccttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgattattattagg 190  Q
    | || ||||||| ||||||||||| |||||| ||||||||| ||||||   |||||||||  | ||||||| ||||||    
T  42014181 ccctacccttacgtatcagattgctaggcggagcagggggccgaggcatgctaggcagcagagttgattatgattagg 42014258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 215 - 581
Target Start/End: Complemental strand, 45075569 - 45075224
Alignment:
Q  215 tgatgatgatgatgtattattgtgacatgttccgtacattttgat--atttctatgacattttccgacataccttt-atattatttcttgcgttttaatt 311  Q
    |||| ||| |||||||| ||| ||||||||| ||||||||||  |  |||||||||||||||| ||| |||||||| |||||||||||||||||||||||    
T  45075569 tgataatggtgatgtataattatgacatgtttcgtacatttttttttatttctatgacatttttcgatataccttttatattatttcttgcgttttaatt 45075470  T
Q  312 ttatctgttaaatattattttgtacgtacattttaatttcctgacatatcctagctgtttactttaatttgcaattggatgcaaaaacatgaaaaattct 411  Q
    |||||| | |||||||||||||||||    |||||  |||                 |||||||||||||||||||||||||||||||| || | |||      
T  45075469 ttatctatgaaatattattttgtacg----ttttatattc-----------------tttactttaatttgcaattggatgcaaaaacaagacagatttc 45075391  T
Q  412 cttagataaccagtgatgtctgcactggtctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactgttgtcggcgcttta 511  Q
    ||   | ||||||||  |  ||||||||||| ||||| |||| |||||| |||||||| | ||||||| |||||||||||| ||||    |||||  | |    
T  45075390 ctggaaaaaccagtgcagattgcactggtcttgtttattggtgtgaacggcagttaacagtcgctggtaccagcggttgttcactga---cggcgtatca 45075294  T
Q  512 tccaacagttcttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagttttcattgt 581  Q
    |  | | ||| ||||||||||||| | |||||| ||||||||||||||||||||| ||||||||||||||    
T  45075293 tagagcggttgttaactgccgctgggggcattttagtattttacttgtgtcaataggaagttttcattgt 45075224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 210 - 338
Target Start/End: Original strand, 45415222 - 45415352
Alignment:
Q  210 gactatgatgatgatgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacatacc-tttatattatttcttgcgtttta 308  Q
    ||||||||| | | |||||||| ||| ||||||||||||||||||||  |||||| ||||||||| |||||||||| ||||||||||||||||| |||||    
T  45415222 gactatgatcaaggtgatgtataattatgacatgttccgtacatttttgtatttccatgacatttcccgacataccttttatattatttcttgcatttta 45415321  T
Q  309 attttat-ctgttaaatattattttgtacgt 338  Q
    ||||||| |||||||||||||||||||||||    
T  45415322 attttatcctgttaaatattattttgtacgt 45415352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 210 - 315
Target Start/End: Complemental strand, 11381739 - 11381633
Alignment:
Q  210 gactatgatgatgatgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacatacc-tttatattatttcttgcgtttta 308  Q
    |||| |||||||| |||||||||||| ||||||  | | ||| || |||||||||||||||||||||  || |||| |||||||||||||||||||||||    
T  11381739 gactttgatgatggtgatgtattattatgacattattcataccttgtgatatttctatgacattttcgtacgtaccttttatattatttcttgcgtttta 11381640  T
Q  309 attttat 315  Q
     ||||||    
T  11381639 tttttat 11381633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 457 - 574
Target Start/End: Complemental strand, 20876388 - 20876274
Alignment:
Q  457 aacgacagttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttcttaactgccgctgagagcatttcagtattttact 556  Q
    |||| |||||||||||||||||  ||||||||||||||| ||   ||||||||   ||||||||| |||||  |||||| | |||||| |||||||||||    
T  20876388 aacggcagttaactgccgctggatccagcggttgttaacagt---cggcgcttagcccaacagttgttaacaaccgctgggggcattttagtattttact 20876292  T
Q  557 tgtgtcaatatgaagttt 574  Q
    ||||||| | ||||||||    
T  20876291 tgtgtcattgtgaagttt 20876274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 45075710 - 45075611
Alignment:
Q  53 agccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcgctgcccttacttatcagattgccaggcggcgcaggggg 152  Q
    ||||||||| | ||||||||||||| ||||||||||||||||||||||  |||||  || |  |  |||||| |||||||||||||||||||| ||||||    
T  45075710 agccgagataaataaagaggagattatccaagaggtgatgcggatagccggtactgatcaccatatccttacgtatcagattgccaggcggcgtaggggg 45075611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 448 - 595
Target Start/End: Complemental strand, 6272593 - 6272448
Alignment:
Q  448 actggtatgaacgacagttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttcttaactgccgctgagagcatttcag 547  Q
    |||||| |||| |||||||||||||||||||||||||||| |||||||||  | ||   | ||    | | ||| ||||| ||||| | | |||||| ||    
T  6272593 actggtgtgaatgacagttaactgccgctggtgccagcgggtgttaactgcaggcgtaacattg---agcggttgttaacggccgcaggg-gcattttag 6272498  T
Q  548 tattttacttgtgtcaatatgaagttttcattgtt--aaaagcaattttc 595  Q
    ||||||| |||||||||||||||||||||||||||  |||||||||||||    
T  6272497 tattttatttgtgtcaatatgaagttttcattgttagaaaagcaattttc 6272448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 210 - 315
Target Start/End: Complemental strand, 11405138 - 11405038
Alignment:
Q  210 gactatgatgatgatgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacatacc-tttatattatttcttgcgtttta 308  Q
    |||| |||||||| |||||||||||| ||||||      ||| || |||||||||||||||||||||  || |||| ||||||||||||||||| |||||    
T  11405138 gactttgatgatggtgatgtattattatgacat------taccttgtgatatttctatgacattttcgtacgtaccatttatattatttcttgcatttta 11405045  T
Q  309 attttat 315  Q
     ||||||    
T  11405044 tttttat 11405038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 457 - 574
Target Start/End: Original strand, 27030551 - 27030662
Alignment:
Q  457 aacgacagttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttcttaactgccgctgagagcatttcagtattttact 556  Q
    |||| ||||||||||||||||| ||||||||||||||||    | || ||||| | ||||| ||| ||||   ||| |||| |||||| |||||||||||    
T  27030551 aacggcagttaactgccgctggagccagcggttgttaac---agccgccgcttaacccaacggttgttaa---ccgttgagggcatttaagtattttact 27030644  T
Q  557 tgtgtcaatatgaagttt 574  Q
    | ||||||| ||||||||    
T  27030645 tatgtcaatgtgaagttt 27030662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 540 - 581
Target Start/End: Complemental strand, 46526108 - 46526067
Alignment:
Q  540 catttcagtattttacttgtgtcaatatgaagttttcattgt 581  Q
    ||||| ||||||||||||||||| ||||||||||||||||||    
T  46526108 cattttagtattttacttgtgtcgatatgaagttttcattgt 46526067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 431 - 498
Target Start/End: Original strand, 1298984 - 1299052
Alignment:
Q  431 ctgcactggtctagtttactggtatgaacgacagttaactgccgct-ggtgccagcggttgttaactgt 498  Q
    ||||||||||   ||| |||||| |||||| ||||||||||||||| ||| ||||||||||||||||||    
T  1298984 ctgcactggttctgttaactggtgtgaacggcagttaactgccgctaggttccagcggttgttaactgt 1299052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 523 - 575
Target Start/End: Original strand, 6322581 - 6322633
Alignment:
Q  523 ttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagtttt 575  Q
    ||||||||||||||| |||||| | |||||||||||||| |||| ||||||||    
T  6322581 ttaactgccgctgagggcattttaatattttacttgtgttaataggaagtttt 6322633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 457 - 570
Target Start/End: Original strand, 42026944 - 42027054
Alignment:
Q  457 aacgacagttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttcttaactgccgctgagagcatttcagtattttact 556  Q
    |||||||||||||||||| ||| ||||||||||||||||    | || ||||| | |||||  || |||||  ||||| | ||||||| | |||||||||    
T  42026944 aacgacagttaactgccgttggagccagcggttgttaac---agccgccgcttaacccaacgattgttaacaaccgcttaaagcatttaaatattttact 42027040  T
Q  557 tgtgtcaatatgaa 570  Q
    ||||||| ||||||    
T  42027041 tgtgtcattatgaa 42027054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 574
Target Start/End: Complemental strand, 20708304 - 20708230
Alignment:
Q  500 gtcggcgctttatccaacagttcttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagttt 574  Q
    ||||||||||   ||||||||| |||||  |||||| | |||||| |||||||||||||||||| | ||||||||    
T  20708304 gtcggcgcttagcccaacagttgttaacaaccgctgggggcattttagtattttacttgtgtcattgtgaagttt 20708230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 190
Target Start/End: Original strand, 3939882 - 3940051
Alignment:
Q  21 gtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcgctgccc 120  Q
    ||||| ||||||||| || |||||||||     |||||||| |||||||||||| | || || ||| |||| ||||| |  |||||| ||||| || |||    
T  3939882 gtgcagatagttgataatgttgtggccatgagcgccgagataactaaagaggagctggtgcaggagatgatccggattggcagtactggtcgccctaccc 3939981  T
Q  121 ttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgattattattagg 190  Q
    |||  |||||||||| ||  | |||| ||||||| | |||  |||||||||| || ||||||| ||||||    
T  3939982 ttatgtatcagattgtcaatcagcgccgggggcataagcattgtaggcagcagggttgattatcattagg 3940051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 10554752 - 10554784
Alignment:
Q  210 gactatgatgatgatgatgtattattgtgacat 242  Q
    |||||||||||||||||||||||||| ||||||    
T  10554752 gactatgatgatgatgatgtattattatgacat 10554784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 31593961 - 31593993
Alignment:
Q  210 gactatgatgatgatgatgtattattgtgacat 242  Q
    |||||||||||||||||||||||||| ||||||    
T  31593961 gactatgatgatgatgatgtattattatgacat 31593993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 523 - 596
Target Start/End: Original strand, 47317790 - 47317865
Alignment:
Q  523 ttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagttttcattgt--taaaagcaattttca 596  Q
    |||||| |||||| | |||||| |||||||||||||||||| | | ||||||||| |||   ||||||||||||||    
T  47317790 ttaactaccgctgggggcatttaagtattttacttgtgtcattgtaaagttttcaatgtcagaaaagcaattttca 47317865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 5e-64; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 13 - 494
Target Start/End: Complemental strand, 12025061 - 12024601
Alignment:
Q  13 gagatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcg 112  Q
    |||||| ||||||||||| ||| ||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||| |  ||||| ||||    
T  12025061 gagatgtggtgcatatagatgacgatattgtggccaggaaagccgagatgactaaagaggagattgtccaggaggtgatgcggatacccggtactggtcg 12024962  T
Q  113 cgctgcccttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgattattattaggnnnnnnnnnnnnnnnnnnngac 212  Q
    | |||||||||| ||||||||| ||||||||| |||||||| ||||||    ||| ||||||| | | ||| ||||||                   |||    
T  12024961 ccctgcccttacgtatcagattaccaggcggcacagggggccgaggcatgccaggaagcatggttaactatgattaggatttttttatgtactttttgac 12024862  T
Q  213 tatgatgatgatgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacataccttt-atattatttcttgcgttttaatt 311  Q
    | |||| ||| |||||||| ||| ||||||||||  ||||||||  ||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  12024861 t-tgatcatggtgatgtataattatgacatgttctatacatttttttatttatatgacattttccgacataccttttatattatttcttgcgttttaatt 12024763  T
Q  312 ttatctgttaaatattattttgtacgtacattttaatttcctgacatatcctagctgtttactttaatttgcaattggatgcaaaaacatgaaaaattct 411  Q
    |||||| | |||||||||||||||||    |||||  |||                 |||||| ||||||||||||||||||||||||| || ||||| |    
T  12024762 ttatctatgaaatattattttgtacg----ttttatattc-----------------tttactctaatttgcaattggatgcaaaaacaagacaaatttt 12024684  T
Q  412 cttagataaccagtgatgtctgcactggtctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaa 494  Q
    ||   | ||||||||  | |||||||||||| |||||||||| |||| | |||||||||||||||||||||||||| ||||||    
T  12024683 ctggaaaaaccagtggagactgcactggtcttgtttactggtgtgaatggcagttaactgccgctggtgccagcgggtgttaa 12024601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 54602724 - 54602557
Alignment:
Q  15 gatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcg 114  Q
    |||| ||||||||||| ||| ||||||||||  || ||||||||||||||||||||||| |||||||| |||||||||| ||| | | ||||| |||||     
T  54602724 gatgtggtgcatatagctgacgatattgtggttaggcaagccgagatgactaaagaggaaattgtccaggaggtgatgcagattgttggtactggtcgcc 54602625  T
Q  115 ctgcccttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgatta 182  Q
    |||||||||| ||| |||||||||||||||||||||||| ||||||   ||||||||| || ||||||    
T  54602624 ctgcccttacgtattagattgccaggcggcgcagggggccgaggcatgctaggcagcagggttgatta 54602557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 39388986 - 39388811
Alignment:
Q  15 gatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcg 114  Q
    |||| ||| ||||||  |||||||||||||| ||| ||||||| ||||||||||||||||||||| || |||||||||||||||||  ||||| |||||     
T  39388986 gatgtggtacatataactgatgatattgtggtcaggcaagccgggatgactaaagaggagattgttcaggaggtgatgcggatagccggtactggtcgcc 39388887  T
Q  115 ctgcccttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagcatggctgattattattagg 190  Q
    ||| |||||| ||||||||||||||| |||| |||||||  |||||   ||||||| | || ||||||| ||||||    
T  39388886 ctgaccttacgtatcagattgccaggtggcgtagggggctaaggcatgctaggcagtagggttgattatgattagg 39388811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 215 - 309
Target Start/End: Complemental strand, 39388781 - 39388686
Alignment:
Q  215 tgatgatgatgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacatacc-tttatattatttcttgcgttttaa 309  Q
    |||||||  |||||||| ||| ||||||||| ||||||||||  |||||||||||||||||| ||| |||| ||||||||||||||||||||||||    
T  39388781 tgatgatcgtgatgtataattatgacatgtttcgtacattttcttatttctatgacattttcggacgtaccttttatattatttcttgcgttttaa 39388686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 224 - 311
Target Start/End: Complemental strand, 54602521 - 54602432
Alignment:
Q  224 tgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacatacc-tttatatta-tttcttgcgttttaatt 311  Q
    |||||||| ||| ||||||||||| ||||||||| ||||| |||||||||||| |||||||| ||||||||| ||| |||||||||||||    
T  54602521 tgatgtataattatgacatgttccatacattttggtatttgtatgacattttctgacataccttttatattatttttttgcgttttaatt 54602432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 16347244 - 16347123
Alignment:
Q  20 ggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcgctgcc 119  Q
    |||||| |||| ||||||||||||||||||    | |||||||||||||||||||||||| || ||||||||  |||| |  | |||| |||||  ||||    
T  16347244 ggtgcagatagctgatgatattgtggccaggagcggcgagatgactaaagaggagattgttcaggaggtgatttggattggcactactggtcgccttgcc 16347145  T
Q  120 cttacttatcagattgccaggc 141  Q
    ||||| |||| |||||||||||    
T  16347144 cttacatatcggattgccaggc 16347123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 431 - 497
Target Start/End: Original strand, 1593742 - 1593808
Alignment:
Q  431 ctgcactggtctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactg 497  Q
    |||||||||||| |||||||||| |||||| |||||||||||| |||||||||  | ||||||||||    
T  1593742 ctgcactggtcttgtttactggtgtgaacggcagttaactgccactggtgccaatgattgttaactg 1593808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 461 - 497
Target Start/End: Original strand, 10311505 - 10311541
Alignment:
Q  461 acagttaactgccgctggtgccagcggttgttaactg 497  Q
    |||||||||||||||||||| |||||||| |||||||    
T  10311505 acagttaactgccgctggtgacagcggttattaactg 10311541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 457 - 497
Target Start/End: Original strand, 55741407 - 55741447
Alignment:
Q  457 aacgacagttaactgccgctggtgccagcggttgttaactg 497  Q
    |||||||||||||||||||||| ||||||||  ||||||||    
T  55741407 aacgacagttaactgccgctggagccagcggcagttaactg 55741447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 111; Significance: 1e-55; HSPs: 3)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 210 - 477
Target Start/End: Complemental strand, 2936 - 2666
Alignment:
Q  210 gactatgatgatgatgatgtattattgtgacatgttccgtacattttgat----atttctatgacattttccgacataccttt-atattatttcttgcgt 304  Q
    |||||||||  || |||||||| ||| ||||||||||||||||||||  |    |||||||||||||||| |||||||||||| ||||||||||||| ||    
T  2936 gactatgatcctggtgatgtataattatgacatgttccgtacatttttttttttatttctatgacatttttcgacataccttttatattatttcttgtgt 2837  T
Q  305 tttaattttatctgttaaatattattttgtacgtacattttaatttcctgacatatcctagctgtttactttaatttgcaattggatgcaaaaacatgaa 404  Q
    |||||||||||||||||||||||||||||||||||| || |||||||| |||||||||| | |  |||||||||||||||||||||  |||||||| |||    
T  2836 tttaattttatctgttaaatattattttgtacgtacgttataatttcccgacatatcctggttcattactttaatttgcaattggagtcaaaaacaggaa 2737  T
Q  405 aaattctcttagataa-ccagtgatgtctgcactggtctagtttactggtatgaacgacagttaactgccgctg 477  Q
    ||   |||||  | || ||||||  | ||||| |||||| |||||||||| |||||| ||||||||||||||||    
T  2736 aa---ctcttctaaaacccagtgcagactgcattggtcttgtttactggtgtgaacggcagttaactgccgctg 2666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 13 - 159
Target Start/End: Complemental strand, 3143 - 2997
Alignment:
Q  13 gagatggggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcg 112  Q
    |||||| ||||||||||| |||||||||||| ||||| ||| |||||||||||||||||||||||||||| ||||||||||||||| |  ||||| ||||    
T  3143 gagatgtggtgcatatagctgatgatattgtagccaggcaaaccgagatgactaaagaggagattgtccaggaggtgatgcggatatccggtactggtcg 3044  T
Q  113 cgctgcccttacttatcagattgccaggcggcgcagggggcagaggc 159  Q
    | |||||||||| |||||||||||||||||||||||||||| |||||    
T  3043 ccctgcccttacgtatcagattgccaggcggcgcagggggccgaggc 2997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 523 - 595
Target Start/End: Complemental strand, 2678 - 2604
Alignment:
Q  523 ttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagttttcattgt--taaaagcaattttc 595  Q
    |||||||||||||||  ||||| ||||||||||||||||||||| |||||| |||||||   |||||||||||||    
T  2678 ttaactgccgctgaggacattttagtattttacttgtgtcaataggaagttgtcattgtcagaaaagcaattttc 2604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 72 - 190
Target Start/End: Original strand, 5433 - 5551
Alignment:
Q  72 gagattgtccaagaggtgatgcggatagctagtactagtcgcgctgcccttacttatcagattgccaggcggcgcagggggcagaggcagagtaggcagc 171  Q
    ||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||  |||||||||    
T  5433 gagatcgtccaggaggtgatgcggatagctagtactagtcgccctgcccttacttattagattgctaggcggcgcagggggcagaggcaaggtaggcagc 5532  T
Q  172 atggctgattattattagg 190  Q
    | |||||||||||||||||    
T  5533 agggctgattattattagg 5551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 286 - 314
Target Start/End: Original strand, 5636 - 5664
Alignment:
Q  286 tttatattatttcttgcgttttaatttta 314  Q
    |||||||||||||||||||||||||||||    
T  5636 tttatattatttcttgcgttttaatttta 5664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 45617 - 45738
Alignment:
Q  20 ggtgcatatagttgatgatattgtggccagacaagccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcgctgcc 119  Q
    |||||| |||| ||||||||||||||||||    | |||||||||||||||||||||||| || ||||||||  |||| |  | |||| |||||  ||||    
T  45617 ggtgcagatagctgatgatattgtggccaggagcggcgagatgactaaagaggagattgttcaggaggtgatttggattggcactactggtcgccttgcc 45716  T
Q  120 cttacttatcagattgccaggc 141  Q
    ||||| |||| |||||||||||    
T  45717 cttacatatcggattgccaggc 45738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 172
Target Start/End: Original strand, 29317 - 29435
Alignment:
Q  54 gccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcgctgcccttacttatcagattgccaggcggcgcagggggc 153  Q
    ||||||||||||||||||||| | || || ||| |||| ||||| |  |||||| ||||| |||||||||  |||||||||| || || || ||||||||    
T  29317 gccgagatgactaaagaggagctcgtgcaggagatgatccggattggcagtactggtcgccctgcccttatgtatcagattgtcatgcagcacagggggc 29416  T
Q  154 agaggcagagtaggcagca 172  Q
    | |||||  ||||||||||    
T  29417 ataggcatcgtaggcagca 29435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 225 - 336
Target Start/End: Original strand, 29487 - 29599
Alignment:
Q  225 gatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacatacc-tttatattatttcttgcgttttaattttatc-tgttaa 322  Q
    ||||||||||| ||||||  | ||||| || ||||||||||||||||||| |  || |||| |||||||||||||||| |||||| ||||||| ||||||    
T  29487 gatgtattattatgacatcattcgtaccttgtgatatttctatgacatttacgtacgtaccttttatattatttcttgtgttttatttttatcatgttaa 29586  T
Q  323 atattattttgtac 336  Q
    | ||||||| ||||    
T  29587 a-attatttcgtac 29599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 210 - 332
Target Start/End: Complemental strand, 62725 - 62607
Alignment:
Q  210 gactatgatgatgatgatgtattattgtgacatgttccgtacattttgatatttctatgacattttccgacatacctttatattatttcttgcgttttaa 309  Q
    ||||||| || || |||||||||||| |||||| ||| |||| || |||||||||||||||||||||  ||   | ||||||||||||||||||||||      
T  62725 gactatggtgctggtgatgtattattatgacattttc-gtaccttgtgatatttctatgacattttcgtac---cttttatattatttcttgcgttttgt 62630  T
Q  310 ttttatc-tgttaaatattatttt 332  Q
    ||||||| ||||||| ||||||||    
T  62629 ttttatcatgttaaa-attatttt 62607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 54 - 190
Target Start/End: Complemental strand, 62880 - 62744
Alignment:
Q  54 gccgagatgactaaagaggagattgtccaagaggtgatgcggatagctagtactagtcgcgctgcccttacttatcagattgccaggcggcgcagggggc 153  Q
    ||||||||||||| ||||||  |||| ||| || |||| ||||| |  ||||||  |||  |||||| ||  |||| ||||||| ||| ||||| |||||    
T  62880 gccgagatgactacagaggaatttgtgcaaaagatgatccggattggcagtactgctcgtcctgcccctatgtatcggattgcctggcagcgcatggggc 62781  T
Q  154 agaggcagagtaggcagcatggctgattattattagg 190  Q
    | |||||  ||||||||||||| || |||| ||||||    
T  62780 ataggcatcgtaggcagcatggttggttatcattagg 62744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 461 - 497
Target Start/End: Original strand, 24528 - 24564
Alignment:
Q  461 acagttaactgccgctggtgccagcggttgttaactg 497  Q
    |||||||||||||||||||||||||||| ||||||||    
T  24528 acagttaactgccgctggtgccagcggtagttaactg 24564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 523 - 575
Target Start/End: Original strand, 32332 - 32384
Alignment:
Q  523 ttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagtttt 575  Q
    |||||| |||||| | |||||| |||||||||||||||||| | |||||||||    
T  32332 ttaactaccgctgggggcatttaagtattttacttgtgtcattgtgaagtttt 32384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 457 - 487
Target Start/End: Original strand, 28597 - 28627
Alignment:
Q  457 aacgacagttaactgccgctggtgccagcgg 487  Q
    |||||||||||||||||||||||||||||||    
T  28597 aacgacagttaactgccgctggtgccagcgg 28627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 539 - 575
Target Start/End: Original strand, 28671 - 28707
Alignment:
Q  539 gcatttcagtattttacttgtgtcaatatgaagtttt 575  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  28671 gcattttagtattttacttgtgtcaatatgaaatttt 28707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 457 - 487
Target Start/End: Complemental strand, 44247 - 44217
Alignment:
Q  457 aacgacagttaactgccgctggtgccagcgg 487  Q
    |||||||||||||||||||||||||||||||    
T  44247 aacgacagttaactgccgctggtgccagcgg 44217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 539 - 575
Target Start/End: Complemental strand, 44173 - 44137
Alignment:
Q  539 gcatttcagtattttacttgtgtcaatatgaagtttt 575  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  44173 gcattttagtattttacttgtgtcaatatgaaatttt 44137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 463 - 505
Target Start/End: Complemental strand, 106892 - 106850
Alignment:
Q  463 agttaactgccgctggtgccagcggttgttaactgttgtcggc 505  Q
    |||||||| ||||||||||||||||  ||||||||||||||||    
T  106892 agttaactaccgctggtgccagcggcagttaactgttgtcggc 106850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 494
Target Start/End: Original strand, 2014 - 2051
Alignment:
Q  457 aacgacagttaactgccgctggtgccagcggttgttaa 494  Q
    ||||||| ||||||||||||||||| ||||||||||||    
T  2014 aacgacacttaactgccgctggtgctagcggttgttaa 2051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University