View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11043_high_3 (Length: 605)
Name: NF11043_high_3
Description: NF11043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11043_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 17 - 596
Target Start/End: Original strand, 30848088 - 30848667
Alignment:
| Q |
17 |
agacatgagggtccattccattattaaatgaagcctctactaggaaatattgaagcacaagagccacctgaacaagaaccataaaaaggtgaggcttaaa |
116 |
Q |
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| T |
30848088 |
agacatgagggtccattccattattaaatgaagcctctactaggaaatattgaagcacaagagccacctgaacaagaaccataaaaaggtgaggcttaaa |
30848187 |
T |
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| Q |
117 |
tttctcatacaccacccaaaatgtttgttcattattagtcatagctttaaaattttgtgcttaacttaagttctccttgattatatttgtgtgtagaagt |
216 |
Q |
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| T |
30848188 |
tttctcatacaccacccaaaatgtttgttcattgttagtcatagctttaaaattttgtgcttaacttaagttctccttgattatatttgtgtgtagaagt |
30848287 |
T |
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| Q |
217 |
tatagacttgtttatttatatatacatgcatgcttgcatcaaattcctaatggaaactgatttgaaaggtgaaaactaatttgattaaatggtctatcaa |
316 |
Q |
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| T |
30848288 |
tatagacttatttatttatatatacatgcatgcttgcatcaaattcctaatggaaactgatttgaaaggtgaaaactaatttgattaaatggtctatcaa |
30848387 |
T |
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| Q |
317 |
agaattgaaagtaattcttcgacaatatattatcatcatagaatattgacagcttcattacacacctatatcttattaacttttatctcctagacttgaa |
416 |
Q |
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| T |
30848388 |
agaattgaaagtaattcttcgacaatatattatcatcatagaatattgacagcttcattacacacctatatcttattaacttttatctcctagacttgaa |
30848487 |
T |
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| Q |
417 |
ggaatacagaataatatataccatggacaaatattttggaggtgaaagttaattctgttctagtttcnnnnnnnnntatgcatgagcataaatatactaa |
516 |
Q |
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| T |
30848488 |
ggaatacagaataatatatactatggacaaatattttggaggtgaaagttaattctgttctagtttcaaaaaaaaatatgcatgagcataaatatactaa |
30848587 |
T |
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| Q |
517 |
tatggttgtctctaatacatgcaaaaatgcagattaatttatttcatgaatgaacttatccttttcaattttggcctttg |
596 |
Q |
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| T |
30848588 |
tatggttgtctctaatacatgcaaaaatgcagattaatttatttcatgaatgaacttatccttttcaattttggcctttg |
30848667 |
T |
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