View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11043_high_4 (Length: 564)

Name: NF11043_high_4
Description: NF11043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11043_high_4
NF11043_high_4
[»] chr4 (23 HSPs)
chr4 (41-504)||(3816415-3816883)
chr4 (41-544)||(3808839-3809337)
chr4 (61-301)||(3956520-3956760)
chr4 (56-544)||(3985821-3986319)
chr4 (56-544)||(4001127-4001630)
chr4 (48-224)||(4024013-4024189)
chr4 (117-544)||(3800482-3800912)
chr4 (442-544)||(3920544-3920646)
chr4 (56-306)||(3933996-3934252)
chr4 (56-224)||(4217452-4217620)
chr4 (56-222)||(3920865-3921031)
chr4 (442-544)||(4024454-4024556)
chr4 (47-164)||(4008825-4008942)
chr4 (436-544)||(3956288-3956396)
chr4 (264-306)||(3920775-3920817)
chr4 (442-541)||(3933771-3933867)
chr4 (242-306)||(4009029-4009093)
chr4 (66-130)||(4017510-4017574)
chr4 (64-130)||(3964730-3964796)
chr4 (436-544)||(4009212-4009320)
chr4 (436-544)||(4217856-4217964)
chr4 (242-301)||(4217647-4217706)
chr4 (442-533)||(3964078-3964166)
[»] chr5 (2 HSPs)
chr5 (61-342)||(13396800-13397087)
chr5 (397-544)||(13397124-13397271)
[»] chr6 (3 HSPs)
chr6 (1-41)||(27682682-27682722)
chr6 (1-41)||(27690003-27690043)
chr6 (1-41)||(30230242-30230282)
[»] chr2 (2 HSPs)
chr2 (1-41)||(31712534-31712574)
chr2 (1-41)||(39156537-39156577)
[»] chr3 (1 HSPs)
chr3 (443-511)||(23454238-23454306)


Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 41 - 504
Target Start/End: Original strand, 3816415 - 3816883
Alignment:
Q  41 taatttggaagataaatatccaattacctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctctgaagaaaaa 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| || ||||||     
T  3816415 taatttggaagataaatatccaattacctgcactccacaccaaagcttttccactagactatctgacaagtccaatataacaagattctttgcagaaaac 3816514  T
Q  141 ttctctgggaatgattttagagggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagcccttgaggaaga--caatc-aaaacctt 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |   |||| ||||||||    
T  3816515 ttctctgggaatgattttagagggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagcccttgaggaaaaacaaatcaaaaacctt 3816614  T
Q  238 ccataccaagaaaatac-aaaaaccgcaggttggtcatcttatc-aaatacatgacggcttaactttagctccctcattgttggcaaacttatgcttcta 335  Q
    | ||||||  ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3816615 ctataccaccaaaatacaaaaaaccgcaggttggtcatcttatcaaaatacatgacggcttaacttcagctccctcattgttggcaaacttatgcttcta 3816714  T
Q  336 atagcattggtaacctgcagtcatgaaagtaaaataaaacattaaaatctttgaaaggcacatttttaaccaacatgacaaatattaatctaaaaatgac 435  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  3816715 atagcattggtaccctgcaatcatgaaagtaaaataaaacattaaaatctttgaaaggcacatttttaatcgacatgacaaatattaatctaaaaatgac 3816814  T
Q  436 atattttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttt 504  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3816815 atattttttaccttgtcatttttcaatacatcataaatttcatcaggattccataatcgactgcgtttt 3816883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 41 - 544
Target Start/End: Original strand, 3808839 - 3809337
Alignment:
Q  41 taatttggaagataaatatccaattacctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctctgaagaaaaa 140  Q
    |||||||||||| |  |||||||||||||||||||||| |||||||||||| | |  |||||   |||||| |||||||||||||||||||| ||||||     
T  3808839 taatttggaagacacgtatccaattacctgcactccacgccaaagcttttccattttactatcatacaagttcaatataacaagattctctgcagaaaag 3808938  T
Q  141 ttctctgggaatgattttagagggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagcccttgaggaagacaatcaaaaccttcca 240  Q
    ||||||||||||||||||||||| || ||  |||||||||||||| ||| |  |  |||||||||||||| || ||||||||||||||  ||||  || |    
T  3808939 ttctctgggaatgattttagaggacaatacatccaatgaagatatcttagattagttggaaaagattgaaacctttgaggaagacaattgaaactatcta 3809038  T
Q  241 taccaagaaaatacaaaaaccgcaggttggtcatcttatcaaatacatgacggcttaactttagctccctcattgttggcaaacttatgcttctaatagc 340  Q
    || ||  |||||||||||| || || ||||||||||||||||||||| || |||||||||  |||| |||||||||| ||| |||||||||||| ||||     
T  3809039 tatcaccaaaatacaaaaatcgaagtttggtcatcttatcaaatacacgagggcttaactcgagcttcctcattgttcgcagacttatgcttcttataga 3809138  T
Q  341 attggtaacctgcagtcatgaaagtaaaataaaacattaaaatctttgaaaggcacatttttaaccaacatgacaaatattaatctaaaaatgacatatt 440  Q
    ||  ||| ||||   ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||| ||||||||||||||| |    
T  3809139 atcagtaccctg---tcatgaaagtaaaataaaacattaaaatctttgaaaggcacctttttaac-aacatgacaaatgtta-tctaaaaatgacatact 3809233  T
Q  441 ttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaactacctcc 540  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3809234 ttttaccttgtcatttttcaatacatcataaatttcatcaggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaactacctcc 3809333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 61 - 301
Target Start/End: Complemental strand, 3956760 - 3956520
Alignment:
Q  61 caattacctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctctgaagaaaaattctctgggaatgattttag 160  Q
    |||||| |||||||||||||||||| ||||| | ||| |||  ||||| ||||||||||||||||||||||| |||||| ||||||| || |||||||||    
T  3956760 caattatctgcactccacaccaaagtttttccagtaggctacctgacaggtccaatataacaagattctctgcagaaaacttctctgagagtgattttag 3956661  T
Q  161 agggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagcccttgaggaagacaatcaaaaccttccataccaagaaaatacaaaaac 260  Q
    |||| |  || |||||||||||||||||| | ||  |||||||||||||| ||||| ||||| || ||| ||||| || ||  || |||||| |||||||    
T  3956660 agggtaacatatccaatgaagatattttagatcagttggaaaagattgaatcccttcaggaatacgatccaaaccatctatgtcacgaaaatccaaaaac 3956561  T
Q  261 cgcaggttggtcatcttatcaaatacatgacggcttaactt 301  Q
     |||||||||||||||||||||||||||   ||||||||||    
T  3956560 tgcaggttggtcatcttatcaaatacattggggcttaactt 3956520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 56 - 544
Target Start/End: Original strand, 3985821 - 3986319
Alignment:
Q  56 atatccaattacctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctctgaagaaaaattctctgggaatgat 155  Q
    |||| |||||||||| |||||||||||||||||||| | ||| ||||| |||||||||||||||||||| ||||||| |||||| |||| ||| |||||     
T  3985821 atattcaattacctgtactccacaccaaagcttttctactaggctatacgacaagtccaatataacaagtttctctgcagaaaacttctttggcaatgac 3985920  T
Q  156 tttagagggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagcccttgaggaagacaatcaaaaccttc---------cataccaa 246  Q
    | ||||||| | | |  ||||||||||||| ||| | ||  |||||||| |||||||||||||||||||  ||| ||||  ||         |  ||||     
T  3985921 tctagagggtaatgtacccaatgaagatatcttagatcagttggaaaaggttgaagcccttgaggaagaagatccaaacaatcatgattgtacccaccat 3986020  T
Q  247 gaaaatacaaaaaccgcaggttggtcatcttatcaaatacatgacggcttaactttagctccctcattgttggcaa------acttatgcttctaatagc 340  Q
     ||||| ||||||   |||||| ||||||||| ||||||||| | |||||||||| |||| ||| |||| || |||      || |||||||||||||||    
T  3986021 aaaaatccaaaaatttcaggttcgtcatcttagcaaatacatcagggcttaacttcagcttcctaattgctgacaagtttagacatatgcttctaatagc 3986120  T
Q  341 attggtaacctgcagtcatgaaagtaaaataaaacattaaaatctttgaaaggcacatttttaaccaacatgacaaatattaatctaaaaatgacatatt 440  Q
    ||  ||| |||   |||||||| | |||| ||||  |  ||||| ||||||| |||||||| |||||| || |||||| || || |||| |||  |||||    
T  3986121 atcagtaccct---gtcatgaatggaaaagaaaa-ttctaaatcattgaaagacacattttaaaccaaaataacaaatgtt-atgtaaagatgctatatt 3986215  T
Q  441 ttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaactacctcc 540  Q
    || ||||||||||||||| || |||||  ||||||||||  ||| |||||||||||||||||| |  |||| ||| ||||||||||||||||| ||||||    
T  3986216 ttataccttgtcattttttaagacatcgcaaatttcatcatgatcccataatcgactgcgtttgtttgggtattcactagattcttggcgaacaacctcc 3986315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 56 - 544
Target Start/End: Original strand, 4001127 - 4001630
Alignment:
Q  56 atatccaattacctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctctgaagaaaaattctctgggaatgat 155  Q
    |||| ||||||||||||||||||||||||| ||||| | | |||||| ||| |||||||||||||||||||||| |  |||||| |||| ||||||||||    
T  4001127 atattcaattacctgcactccacaccaaagattttccactcgactatgtgaaaagtccaatataacaagattctttccagaaaacttctttgggaatgat 4001226  T
Q  156 tttagagggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagcccttgaggaagacaatcaaaaccttccataccaagaaaataca 255  Q
    ||||||||| | | | |||||  || |||| ||| | ||  ||| ||||||||||||||||||||||||   || ||| | |   ||||||  |||| ||    
T  4001227 tttagagggtaatgtatccaacaaatatatcttagatcagttgggaaagattgaagcccttgaggaagaagttccaaatcgtatttaccaatgaaatcca 4001326  T
Q  256 aaaaccgcaggttggtcatcttatcaaatacatgacggcttaactttagctccctcattgttggcaa------acttatgcttctaatagcattggtaac 349  Q
    || | |||||||||||||||||| ||||||||||| |||||||||| |||| ||| | || || |||      || |||||||||||||||||  ||| |    
T  4001327 aatatcgcaggttggtcatcttagcaaatacatgagggcttaacttcagcttcctaaatgatgacaagtctacacgtatgcttctaatagcatcagtacc 4001426  T
Q  350 ctgcagtcatgaaagtaaaataaaacatta-aaatctttgaaaggcacatttttaaccaacatgacaaatat---taa------tctaaaaatgac---a 436  Q
    || |   ||| || |||||| |||| |||| ||||| ||||||| || |||||||||||| |||||| || |   |||      |||||||| | |   |    
T  4001427 ctac---cattaatgtaaaagaaaa-attacaaatcattgaaagccatatttttaaccaaaatgacatatgtttctaaaaagtttctaaaaacgccatta 4001522  T
Q  437 tattttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaactac 536  Q
    ||||||||||||||||||||||||||||||   |||| ||||| |||| |||||| ||||| |||||   ||||| ||| ||||||||||||||||| ||    
T  4001523 tattttttaccttgtcatttttcaatacatagcaaatgtcatcaggatcccataaccgacttcgtttactagggtcttcactagattcttggcgaacaac 4001622  T
Q  537 ctcccgac 544  Q
    ||||||||    
T  4001623 ctcccgac 4001630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 48 - 224
Target Start/End: Original strand, 4024013 - 4024189
Alignment:
Q  48 gaagataaatatccaattacctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctctgaagaaaaattctctg 147  Q
    ||||| |||||| || |||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| || |||||| |||||||    
T  4024013 gaagagaaatattcacttacctgcactccacaccaaagcttttccactagactatctgacaagtccaatataacaagattctttgcagaaaacttctctg 4024112  T
Q  148 ggaatgattttagagggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagcccttgaggaaga 224  Q
    ||||||||||||||||| | |   |||||  ||||||| ||| | ||  ||||||||||||||||||||||||||||    
T  4024113 ggaatgattttagagggtaattcatccaagaaagatatcttagatcagttggaaaagattgaagcccttgaggaaga 4024189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 117 - 544
Target Start/End: Original strand, 3800482 - 3800912
Alignment:
Q  117 ataacaagattctctgaagaaaaattctctgggaatgattttagagggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagccctt 216  Q
    ||||||||||||| || |||||| |||||||||||||||||||||||| | |   |||||||||||||| ||| | ||  ||||||||||||||||||||    
T  3800482 ataacaagattctttgcagaaaacttctctgggaatgattttagagggtaatgcatccaatgaagatatcttagatcatttggaaaagattgaagccctt 3800581  T
Q  217 gaggaagacaatcaaaaccttccataccaagaaaatacaaaaaccgcaggttggtcatcttatcaaatacatgacggcttaactttagctccctcattgt 316  Q
    ||||||||   || ||| | |   ||||| |||||| |||| | |||| ||||||||||||| ||||||||||| |||||||||| |||| ||| | ||     
T  3800582 gaggaagaagttccaaatcgtatttaccatgaaaatccaaatatcgcaagttggtcatcttagcaaatacatgagggcttaacttcagcttcctaaatga 3800681  T
Q  317 tggcaa------acttatgcttctaatagcattggtaacctgcagtcatgaaagtaaaataaaacattaaaatctttgaaaggcacatttttaaccaaca 410  Q
    || |||      || |||||||||||||||||  ||| ||| |   ||| || |||||| |||| |||  |||| ||||||| || |||||||||||| |    
T  3800682 tgacaagtctacacgtatgcttctaatagcatcagtaccctac---cattaacgtaaaagaaaa-atttcaatcattgaaagccatatttttaaccaaaa 3800777  T
Q  411 tgacaaatattaatctaaaaatg--acatattttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcag 508  Q
    | ||| || || |||| |||  |  | ||||||||||||||||||||||||||||||||||| ||   ||| |||| ||||||  |||||| ||||  ||    
T  3800778 taacatatgtt-atctgaaatagccaaatattttttaccttgtcatttttcaatacatcatagataatatcaggatcccataaatgactgcattttctag 3800876  T
Q  509 ggtgttctctagattcttggcgaactacctcccgac 544  Q
    ||| ||| ||| ||||||||||||| ||||||||||    
T  3800877 ggtcttcactatattcttggcgaacaacctcccgac 3800912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 442 - 544
Target Start/End: Complemental strand, 3920646 - 3920544
Alignment:
Q  442 tttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaactacctccc 541  Q
    ||||||||||||||||||||||||||| |||| |||||   || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3920646 tttaccttgtcatttttcaatacatcacaaatgtcatcaacatcccataatcgactgcgtttttcagggtgttctctagattcttggcgaactacctccc 3920547  T
Q  542 gac 544  Q
    |||    
T  3920546 gac 3920544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 56 - 306
Target Start/End: Complemental strand, 3934252 - 3933996
Alignment:
Q  56 atatccaattacctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctctgaagaaaaattctctgggaatgat 155  Q
    |||| |||||||||| ||||||||||| |||||||| | | |||||    ||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  3934252 atattcaattacctgtactccacaccatagcttttccattcgactaagatacaagtccaatataacaagattctctgcagaaaacttctctgggaatgat 3934153  T
Q  156 tttagagggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagcccttgaggaagacaatcaaaa---ccttccataccaa---gaa 249  Q
    ||||||||| |  ||  ||||||||||||| | | ||||  ||||||||||| |||||||||||||| |  ||| |||    | || | | |||    ||    
T  3934152 tttagagggtaacatacccaatgaagatatctaagaccagttggaaaagattcaagcccttgaggaaaaagatccaaatagtcatcaaaatcaacccaaa 3934053  T
Q  250 aatacaaaaaccgcaggttggtcatcttatcaaatacatgacggcttaactttagct 306  Q
    ||| ||||||  | ||||||||||||||||||||||||||| |||||||||||||||    
T  3934052 aattcaaaaattggaggttggtcatcttatcaaatacatgagggcttaactttagct 3933996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 4217452 - 4217620
Alignment:
Q  56 atatccaattacctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctctgaagaaaaattctctgggaatgat 155  Q
    |||| |||||||||| |||||||||||||||||||| | |  ||||||   ||||| |||||||||||||||||||| |||||| |||||||||||||||    
T  4217452 atattcaattacctgtactccacaccaaagcttttccactttactataacgcaagttcaatataacaagattctctgcagaaaagttctctgggaatgat 4217551  T
Q  156 tttagagggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagcccttgaggaaga 224  Q
    ||||||||| |  ||  |||| |||||||| ||| | ||  ||||||||||||||||||| ||||||||    
T  4217552 tttagagggtaacatacccaacgaagatatcttagatcatttggaaaagattgaagccctcgaggaaga 4217620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 56 - 222
Target Start/End: Complemental strand, 3921031 - 3920865
Alignment:
Q  56 atatccaattacctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctctgaagaaaaattctctgggaatgat 155  Q
    |||| |||||||||| ||||||||||| |||||||| | | ||| |    ||||||||||||||||||||||||| | | |||| ||||||| |||||||    
T  3921031 atattcaattacctgtactccacaccatagcttttccattcgaccaagatacaagtccaatataacaagattctcagcaaaaaacttctctgagaatgat 3920932  T
Q  156 tttagagggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagcccttgaggaa 222  Q
    ||||||||| | | | |||||||||||||| ||| ||||  ||||||||||| ||||||||||||||    
T  3920931 tttagagggtaatctatccaatgaagatatcttaaaccagttggaaaagattcaagcccttgaggaa 3920865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 442 - 544
Target Start/End: Original strand, 4024454 - 4024556
Alignment:
Q  442 tttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaactacctccc 541  Q
    |||||||||||||||| |||||||||| |||| |||||  ||| |||||||||||||||||||  ||||| | | ||||||||||||||||| |||||||    
T  4024454 tttaccttgtcattttccaatacatcacaaatgtcatcatgatcccataatcgactgcgttttctagggtctgcactagattcttggcgaacaacctccc 4024553  T
Q  542 gac 544  Q
    |||    
T  4024554 gac 4024556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 47 - 164
Target Start/End: Original strand, 4008825 - 4008942
Alignment:
Q  47 ggaagataaatatccaattacctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctctgaagaaaaattctct 146  Q
    |||||||| |||  ||||||||| ||||||| ||||||||||||| | | | ||| |||||||||| ||||||||||||||||| | |||||| |||| |    
T  4008825 ggaagatacatagtcaattaccttcactccataccaaagcttttctacttggctaaatgacaagtcaaatataacaagattctccgcagaaaacttcttt 4008924  T
Q  147 gggaatgattttagaggg 164  Q
    || |||||||||||||||    
T  4008925 ggcaatgattttagaggg 4008942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 436 - 544
Target Start/End: Complemental strand, 3956396 - 3956288
Alignment:
Q  436 atattttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaacta 535  Q
    ||||||||||||||||||||||||||||||||||| ||   ||| |||||  |||||||||||| ||||  ||||| ||| || |||||||||||||| |    
T  3956396 atattttttaccttgtcatttttcaatacatcatagataatatcaggattggataatcgactgcattttctagggtcttcactggattcttggcgaacaa 3956297  T
Q  536 cctcccgac 544  Q
    |||||||||    
T  3956296 cctcccgac 3956288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 264 - 306
Target Start/End: Complemental strand, 3920817 - 3920775
Alignment:
Q  264 aggttggtcatcttatcaaatacatgacggcttaactttagct 306  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  3920817 aggttggtcatcttatcaaatacatgagggcttaactttagct 3920775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 442 - 541
Target Start/End: Complemental strand, 3933867 - 3933771
Alignment:
Q  442 tttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaactacctccc 541  Q
    ||||||||||||||||||||||||||| |||| |||||   || |||||||||||||| |||| || ||   || ||||||||||| ||||| |||||||    
T  3933867 tttaccttgtcatttttcaatacatcaaaaatgtcatcaacatcccataatcgactgcattttccaagg---tcactagattcttgccgaacaacctccc 3933771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 306
Target Start/End: Original strand, 4009029 - 4009093
Alignment:
Q  242 accaagaaaatacaaaaaccgcaggttggtcatcttatcaaatacatgacggcttaactttagct 306  Q
    |||| |||||| ||||||  ||||||||||||||||| ||||||||||| |||||||||| ||||    
T  4009029 accatgaaaatccaaaaatagcaggttggtcatcttagcaaatacatgagggcttaacttcagct 4009093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 4017510 - 4017574
Alignment:
Q  66 acctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctc 130  Q
    ||||||||||||  ||| |||||||||| | ||||||||||||||||||||||||| || |||||    
T  4017510 acctgcactccatgccagagcttttcaactcgactatatgacaagtccaatataacgagtttctc 4017574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 130
Target Start/End: Complemental strand, 3964796 - 3964730
Alignment:
Q  64 ttacctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctc 130  Q
    ||||||||||||||  ||| || ||||||| | ||||||||||||||||||||||||| || |||||    
T  3964796 ttacctgcactccatgccagagtttttcaactcgactatatgacaagtccaatataacgagtttctc 3964730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 544
Target Start/End: Original strand, 4009212 - 4009320
Alignment:
Q  436 atattttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaacta 535  Q
    |||| |||||||||||| ||||||||||||||||| ||   ||| |||| ||||| | |||||| ||||  ||| | ||| ||||||||||  ||||| |    
T  4009212 atatattttaccttgtcgtttttcaatacatcatagataatatcaggatcccatagttgactgcattttataggatcttcactagattcttaacgaacaa 4009311  T
Q  536 cctcccgac 544  Q
    |||||||||    
T  4009312 cctcccgac 4009320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 544
Target Start/End: Original strand, 4217856 - 4217964
Alignment:
Q  436 atattttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaacta 535  Q
    |||||||||||||||||||||| ||||||||   |||| ||||| |||| |||||| |||||  ||||   ||||| ||   |||||||| ||||||| |    
T  4217856 atattttttaccttgtcattttccaatacatagcaaatgtcatcaggatcccataaccgactttgtttactagggtctttaatagattctaggcgaacaa 4217955  T
Q  536 cctcccgac 544  Q
    |||||||||    
T  4217956 cctcccgac 4217964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 301
Target Start/End: Original strand, 4217647 - 4217706
Alignment:
Q  242 accaagaaaatacaaaaaccgcaggttggtcatcttatcaaatacatgacggcttaactt 301  Q
    ||||| ||||| ||||||   |||||||||||||||| ||||||||||| ||||||||||    
T  4217647 accaaaaaaattcaaaaatttcaggttggtcatcttagcaaatacatgagggcttaactt 4217706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 533
Target Start/End: Complemental strand, 3964166 - 3964078
Alignment:
Q  442 tttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaac 533  Q
    ||||||||||||||||| ||||| |||||||| |||||   || |||||||||||| ||  || |||||| | | || ||||||||||||||    
T  3964166 tttaccttgtcattttttaatacttcataaatgtcatc---atcccataatcgactacggcttccagggtctccacttgattcttggcgaac 3964078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 61 - 342
Target Start/End: Original strand, 13396800 - 13397087
Alignment:
Q  61 caattacctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctctgaagaaaaattctctgggaatgattttag 160  Q
    |||||||||| |||||||||||||||||||| |  || ||||||| |||| ||| |||||||||||| ||   |||||| ||||||||||||||||||||    
T  13396800 caattacctgtactccacaccaaagcttttctacaaggctatatggcaagcccagtataacaagattatcaacagaaaacttctctgggaatgattttag 13396899  T
Q  161 agggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagcccttgaggaagacaatcaaaaccttccataccaagaaaatacaaaaac 260  Q
    |||| | |   |||||| ||||||| ||| | ||  ||||||| ||||||||||||||||||||| ||| ||||| || ||| || |||||||||||||     
T  13396900 agggtaatgcatccaataaagatatcttagatcagttggaaaaaattgaagcccttgaggaagacgatccaaaccgtctatatcatgaaaatacaaaaat 13396999  T
Q  261 cgcaggttggtcatcttatcaaatacatgacggcttaactttagctccctcattgttggcaa------acttatgcttctaatagcat 342  Q
      ||||||||||||||||||||||||| |  |||||||||| |||| ||| |||| || |||      ||||||||||||||||||||    
T  13397000 ttcaggttggtcatcttatcaaatacaggcgggcttaacttcagcttcctaattgctgacaagtctacacttatgcttctaatagcat 13397087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 397 - 544
Target Start/End: Original strand, 13397124 - 13397271
Alignment:
Q  397 atttttaaccaacatgacaaatattaatctaaaaatgacatatttt-ttaccttgtcatttttcaatacatcataaatttcatctggattccataatcga 495  Q
    |||||| ||||| ||||||||| ||| ||||||| || || ||||| ||||||||||||||||||||||||| || ||   ||| |||| ||||||||||    
T  13397124 attttttaccaaaatgacaaatgtta-tctaaaattgccaaatttttttaccttgtcatttttcaatacatcgtagataatatcaggatcccataatcga 13397222  T
Q  496 ctgcgtttttcagggtgttctctagattcttggcgaactacctcccgac 544  Q
    |||| ||||  ||||| ||| ||||||||||||||||| ||||| ||||    
T  13397223 ctgcattttctagggtcttcactagattcttggcgaacaacctcgcgac 13397271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 27682722 - 27682682
Alignment:
Q  1 gagagctacgggaggaagagaaagaatgagggaagtgttat 41  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  27682722 gagagctacgggaggaaaagaaagaatgagggaagtgttat 27682682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 27690043 - 27690003
Alignment:
Q  1 gagagctacgggaggaagagaaagaatgagggaagtgttat 41  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  27690043 gagagctacgggaggaaaagaaagaatgagggaagtgttat 27690003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 30230242 - 30230282
Alignment:
Q  1 gagagctacgggaggaagagaaagaatgagggaagtgttat 41  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  30230242 gagagctacgggaggaaaagaaagaatgagggaagtgttat 30230282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 31712574 - 31712534
Alignment:
Q  1 gagagctacgggaggaagagaaagaatgagggaagtgttat 41  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  31712574 gagagctacgggaggaaaagaaagaatgagggaagtgttat 31712534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 39156537 - 39156577
Alignment:
Q  1 gagagctacgggaggaagagaaagaatgagggaagtgttat 41  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  39156537 gagagctacgggaggaaaagaaagaatgagggaagtgttat 39156577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 443 - 511
Target Start/End: Original strand, 23454238 - 23454306
Alignment:
Q  443 ttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggt 511  Q
    |||||||||  ||||||||||||||| | ||||| || | |||||| |||||||| |||||| ||||||    
T  23454238 ttaccttgttttttttcaatacatcagatatttcttcagcattccacaatcgacttcgttttccagggt 23454306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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